data_7KOZ # _model_server_result.job_id AG6oO7sH-q71JewThWTM-w _model_server_result.datetime_utc '2024-11-08 19:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7koz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 7KOZ # _exptl.entry_id 7KOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KOZ _cell.length_a 42.188 _cell.length_b 90.034 _cell.length_c 105.083 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 102 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 206 A CYS 206 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 26 B CYS 26 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 G C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7KOZ _atom_sites.fract_transf_matrix[1][1] 0.023703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 WU7 A 1 301 301 WU7 WEG . D 4 EDO A 1 302 401 EDO EDO . E 4 EDO A 1 303 501 EDO EDO . F 4 EDO A 1 304 601 EDO EDO . G 5 NAG A 1 305 602 NAG NAG . H 4 EDO A 1 306 201 EDO EDO . I 6 HOH A 1 401 71 HOH HOH . I 6 HOH A 2 402 87 HOH HOH . I 6 HOH A 3 403 88 HOH HOH . I 6 HOH A 4 404 36 HOH HOH . I 6 HOH A 5 405 84 HOH HOH . I 6 HOH A 6 406 73 HOH HOH . I 6 HOH A 7 407 60 HOH HOH . I 6 HOH A 8 408 6 HOH HOH . I 6 HOH A 9 409 16 HOH HOH . I 6 HOH A 10 410 10 HOH HOH . I 6 HOH A 11 411 49 HOH HOH . I 6 HOH A 12 412 42 HOH HOH . I 6 HOH A 13 413 67 HOH HOH . I 6 HOH A 14 414 50 HOH HOH . I 6 HOH A 15 415 21 HOH HOH . I 6 HOH A 16 416 45 HOH HOH . I 6 HOH A 17 417 15 HOH HOH . I 6 HOH A 18 418 30 HOH HOH . I 6 HOH A 19 419 54 HOH HOH . I 6 HOH A 20 420 4 HOH HOH . I 6 HOH A 21 421 2 HOH HOH . I 6 HOH A 22 422 66 HOH HOH . I 6 HOH A 23 423 85 HOH HOH . I 6 HOH A 24 424 32 HOH HOH . I 6 HOH A 25 425 3 HOH HOH . I 6 HOH A 26 426 80 HOH HOH . I 6 HOH A 27 427 37 HOH HOH . I 6 HOH A 28 428 57 HOH HOH . I 6 HOH A 29 429 11 HOH HOH . I 6 HOH A 30 430 8 HOH HOH . I 6 HOH A 31 431 51 HOH HOH . I 6 HOH A 32 432 33 HOH HOH . I 6 HOH A 33 433 18 HOH HOH . I 6 HOH A 34 434 26 HOH HOH . I 6 HOH A 35 435 41 HOH HOH . I 6 HOH A 36 436 35 HOH HOH . I 6 HOH A 37 437 31 HOH HOH . I 6 HOH A 38 438 63 HOH HOH . I 6 HOH A 39 439 68 HOH HOH . I 6 HOH A 40 440 20 HOH HOH . I 6 HOH A 41 441 55 HOH HOH . I 6 HOH A 42 442 58 HOH HOH . I 6 HOH A 43 443 44 HOH HOH . I 6 HOH A 44 444 69 HOH HOH . I 6 HOH A 45 445 70 HOH HOH . I 6 HOH A 46 446 22 HOH HOH . I 6 HOH A 47 447 81 HOH HOH . I 6 HOH A 48 448 75 HOH HOH . I 6 HOH A 49 449 82 HOH HOH . I 6 HOH A 50 450 52 HOH HOH . I 6 HOH A 51 451 78 HOH HOH . I 6 HOH A 52 452 65 HOH HOH . I 6 HOH A 53 453 59 HOH HOH . I 6 HOH A 54 454 25 HOH HOH . I 6 HOH A 55 455 61 HOH HOH . I 6 HOH A 56 456 79 HOH HOH . I 6 HOH A 57 457 47 HOH HOH . I 6 HOH A 58 458 77 HOH HOH . I 6 HOH A 59 459 76 HOH HOH . J 6 HOH B 1 201 64 HOH HOH . J 6 HOH B 2 202 39 HOH HOH . J 6 HOH B 3 203 5 HOH HOH . J 6 HOH B 4 204 43 HOH HOH . J 6 HOH B 5 205 19 HOH HOH . J 6 HOH B 6 206 29 HOH HOH . J 6 HOH B 7 207 17 HOH HOH . J 6 HOH B 8 208 1 HOH HOH . J 6 HOH B 9 209 83 HOH HOH . J 6 HOH B 10 210 46 HOH HOH . J 6 HOH B 11 211 28 HOH HOH . J 6 HOH B 12 212 13 HOH HOH . J 6 HOH B 13 213 12 HOH HOH . J 6 HOH B 14 214 24 HOH HOH . J 6 HOH B 15 215 74 HOH HOH . J 6 HOH B 16 216 48 HOH HOH . J 6 HOH B 17 217 27 HOH HOH . J 6 HOH B 18 218 14 HOH HOH . J 6 HOH B 19 219 7 HOH HOH . J 6 HOH B 20 220 72 HOH HOH . J 6 HOH B 21 221 38 HOH HOH . J 6 HOH B 22 222 86 HOH HOH . J 6 HOH B 23 223 40 HOH HOH . J 6 HOH B 24 224 23 HOH HOH . J 6 HOH B 25 225 53 HOH HOH . J 6 HOH B 26 226 56 HOH HOH . J 6 HOH B 27 227 34 HOH HOH . J 6 HOH B 28 228 9 HOH HOH . J 6 HOH B 29 229 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 5 12.692 35.156 15.188 1 74.15 ? C1 NAG 305 A 1 HETATM 2 C C2 NAG . . . G 5 12.298 36.57 14.758 1 87.6 ? C2 NAG 305 A 1 HETATM 3 C C3 NAG . . . G 5 11.663 36.544 13.363 1 100.01 ? C3 NAG 305 A 1 HETATM 4 C C4 NAG . . . G 5 12.538 35.777 12.377 1 99.71 ? C4 NAG 305 A 1 HETATM 5 C C5 NAG . . . G 5 13.039 34.443 12.93 1 92.03 ? C5 NAG 305 A 1 HETATM 6 C C6 NAG . . . G 5 14.113 33.833 12.059 1 88.24 ? C6 NAG 305 A 1 HETATM 7 C C7 NAG . . . G 5 10.197 37.06 16.118 1 80.09 ? C7 NAG 305 A 1 HETATM 8 C C8 NAG . . . G 5 9.452 35.935 15.452 1 70.69 ? C8 NAG 305 A 1 HETATM 9 N N2 NAG . . . G 5 11.477 37.285 15.739 1 85.25 ? N2 NAG 305 A 1 HETATM 10 O O3 NAG . . . G 5 11.448 37.868 12.891 1 105.21 ? O3 NAG 305 A 1 HETATM 11 O O4 NAG . . . G 5 11.772 35.472 11.22 1 103.22 ? O4 NAG 305 A 1 HETATM 12 O O5 NAG . . . G 5 13.612 34.609 14.235 1 84.7 ? O5 NAG 305 A 1 HETATM 13 O O6 NAG . . . G 5 14.597 32.622 12.621 1 87.61 ? O6 NAG 305 A 1 HETATM 14 O O7 NAG . . . G 5 9.655 37.759 16.976 1 80.79 ? O7 NAG 305 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #