data_7KP2 # _model_server_result.job_id FIx1VVKKDexgneNJsm0b-g _model_server_result.datetime_utc '2024-11-30 14:32:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kp2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7KP2 # _exptl.entry_id 7KP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 253.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-NEOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.5 _cell.angle_gamma 90 _cell.entry_id 7KP2 _cell.length_a 33.488 _cell.length_b 54.616 _cell.length_c 33.448 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 56 A TRP 74 1_555 A N MSE 57 A MSE 75 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C TRP 56 A TRP 74 1_555 A N MSE 57 A MSE 75 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C MSE 57 A MSE 75 1_555 A N GLY 58 A GLY 76 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 A C MSE 57 A MSE 75 1_555 A N GLY 58 A GLY 76 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 A C PRO 96 A PRO 114 1_555 A N MSE 97 A MSE 115 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C PRO 96 A PRO 114 1_555 A N MSE 97 A MSE 115 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 A C MSE 97 A MSE 115 1_555 A N GLN 98 A GLN 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C ARG 125 A ARG 143 1_555 A N MSE 126 A MSE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C MSE 126 A MSE 144 1_555 A N VAL 127 A VAL 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C9 H11 N5 O4' _chem_comp.formula_weight 253.215 _chem_comp.id NEU _chem_comp.mon_nstd_flag . _chem_comp.name L-NEOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-AMINO-6-((1S,2R)-1,2,3-TRIHYDROXYPROPYL)PTERIDIN-4(3H)-ONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 NEU sing 224 n y N2 C3 NEU sing 225 n y N2 HN2 NEU sing 226 n n C1 C10 NEU sing 227 n y C1 O11 NEU doub 228 n n C10 N9 NEU sing 229 n y C10 C5 NEU doub 230 n y N9 C8 NEU doub 231 n y C8 C7 NEU sing 232 n y C8 C16 NEU sing 233 n n C7 N6 NEU doub 234 n y C7 H7 NEU sing 235 n n N6 C5 NEU sing 236 n y C5 N4 NEU sing 237 n y N4 C3 NEU doub 238 n y C3 N13 NEU sing 239 n n N13 H131 NEU sing 240 n n N13 H132 NEU sing 241 n n C16 O21 NEU sing 242 n n C16 C26 NEU sing 243 n n C16 H16 NEU sing 244 n n O21 H21 NEU sing 245 n n C26 O22 NEU sing 246 n n C26 C28 NEU sing 247 n n C26 H26 NEU sing 248 n n O22 H22 NEU sing 249 n n C28 O24 NEU sing 250 n n C28 H281 NEU sing 251 n n C28 H282 NEU sing 252 n n O24 H24 NEU sing 253 n n # _atom_sites.entry_id 7KP2 _atom_sites.fract_transf_matrix[1][1] 0.029861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00078 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NEU A 1 201 1 NEU NEU . C 3 HOH A 1 301 10 HOH HOH . C 3 HOH A 2 302 136 HOH HOH . C 3 HOH A 3 303 103 HOH HOH . C 3 HOH A 4 304 76 HOH HOH . C 3 HOH A 5 305 85 HOH HOH . C 3 HOH A 6 306 160 HOH HOH . C 3 HOH A 7 307 52 HOH HOH . C 3 HOH A 8 308 141 HOH HOH . C 3 HOH A 9 309 46 HOH HOH . C 3 HOH A 10 310 173 HOH HOH . C 3 HOH A 11 311 15 HOH HOH . C 3 HOH A 12 312 14 HOH HOH . C 3 HOH A 13 313 19 HOH HOH . C 3 HOH A 14 314 39 HOH HOH . C 3 HOH A 15 315 115 HOH HOH . C 3 HOH A 16 316 142 HOH HOH . C 3 HOH A 17 317 72 HOH HOH . C 3 HOH A 18 318 23 HOH HOH . C 3 HOH A 19 319 162 HOH HOH . C 3 HOH A 20 320 7 HOH HOH . C 3 HOH A 21 321 27 HOH HOH . C 3 HOH A 22 322 3 HOH HOH . C 3 HOH A 23 323 5 HOH HOH . C 3 HOH A 24 324 51 HOH HOH . C 3 HOH A 25 325 13 HOH HOH . C 3 HOH A 26 326 81 HOH HOH . C 3 HOH A 27 327 75 HOH HOH . C 3 HOH A 28 328 92 HOH HOH . C 3 HOH A 29 329 48 HOH HOH . C 3 HOH A 30 330 4 HOH HOH . C 3 HOH A 31 331 122 HOH HOH . C 3 HOH A 32 332 53 HOH HOH . C 3 HOH A 33 333 158 HOH HOH . C 3 HOH A 34 334 156 HOH HOH . C 3 HOH A 35 335 137 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 57 HOH HOH . C 3 HOH A 38 338 71 HOH HOH . C 3 HOH A 39 339 133 HOH HOH . C 3 HOH A 40 340 113 HOH HOH . C 3 HOH A 41 341 61 HOH HOH . C 3 HOH A 42 342 108 HOH HOH . C 3 HOH A 43 343 11 HOH HOH . C 3 HOH A 44 344 33 HOH HOH . C 3 HOH A 45 345 40 HOH HOH . C 3 HOH A 46 346 79 HOH HOH . C 3 HOH A 47 347 56 HOH HOH . C 3 HOH A 48 348 126 HOH HOH . C 3 HOH A 49 349 107 HOH HOH . C 3 HOH A 50 350 106 HOH HOH . C 3 HOH A 51 351 74 HOH HOH . C 3 HOH A 52 352 17 HOH HOH . C 3 HOH A 53 353 65 HOH HOH . C 3 HOH A 54 354 25 HOH HOH . C 3 HOH A 55 355 29 HOH HOH . C 3 HOH A 56 356 24 HOH HOH . C 3 HOH A 57 357 16 HOH HOH . C 3 HOH A 58 358 6 HOH HOH . C 3 HOH A 59 359 43 HOH HOH . C 3 HOH A 60 360 178 HOH HOH . C 3 HOH A 61 361 54 HOH HOH . C 3 HOH A 62 362 38 HOH HOH . C 3 HOH A 63 363 62 HOH HOH . C 3 HOH A 64 364 55 HOH HOH . C 3 HOH A 65 365 21 HOH HOH . C 3 HOH A 66 366 8 HOH HOH . C 3 HOH A 67 367 35 HOH HOH . C 3 HOH A 68 368 31 HOH HOH . C 3 HOH A 69 369 117 HOH HOH . C 3 HOH A 70 370 146 HOH HOH . C 3 HOH A 71 371 64 HOH HOH . C 3 HOH A 72 372 77 HOH HOH . C 3 HOH A 73 373 45 HOH HOH . C 3 HOH A 74 374 69 HOH HOH . C 3 HOH A 75 375 30 HOH HOH . C 3 HOH A 76 376 60 HOH HOH . C 3 HOH A 77 377 138 HOH HOH . C 3 HOH A 78 378 2 HOH HOH . C 3 HOH A 79 379 83 HOH HOH . C 3 HOH A 80 380 151 HOH HOH . C 3 HOH A 81 381 177 HOH HOH . C 3 HOH A 82 382 26 HOH HOH . C 3 HOH A 83 383 139 HOH HOH . C 3 HOH A 84 384 172 HOH HOH . C 3 HOH A 85 385 100 HOH HOH . C 3 HOH A 86 386 18 HOH HOH . C 3 HOH A 87 387 68 HOH HOH . C 3 HOH A 88 388 147 HOH HOH . C 3 HOH A 89 389 168 HOH HOH . C 3 HOH A 90 390 99 HOH HOH . C 3 HOH A 91 391 63 HOH HOH . C 3 HOH A 92 392 59 HOH HOH . C 3 HOH A 93 393 44 HOH HOH . C 3 HOH A 94 394 9 HOH HOH . C 3 HOH A 95 395 32 HOH HOH . C 3 HOH A 96 396 37 HOH HOH . C 3 HOH A 97 397 49 HOH HOH . C 3 HOH A 98 398 109 HOH HOH . C 3 HOH A 99 399 121 HOH HOH . C 3 HOH A 100 400 124 HOH HOH . C 3 HOH A 101 401 135 HOH HOH . C 3 HOH A 102 402 70 HOH HOH . C 3 HOH A 103 403 119 HOH HOH . C 3 HOH A 104 404 82 HOH HOH . C 3 HOH A 105 405 78 HOH HOH . C 3 HOH A 106 406 47 HOH HOH . C 3 HOH A 107 407 42 HOH HOH . C 3 HOH A 108 408 41 HOH HOH . C 3 HOH A 109 409 175 HOH HOH . C 3 HOH A 110 410 110 HOH HOH . C 3 HOH A 111 411 28 HOH HOH . C 3 HOH A 112 412 114 HOH HOH . C 3 HOH A 113 413 20 HOH HOH . C 3 HOH A 114 414 22 HOH HOH . C 3 HOH A 115 415 58 HOH HOH . C 3 HOH A 116 416 12 HOH HOH . C 3 HOH A 117 417 50 HOH HOH . C 3 HOH A 118 418 163 HOH HOH . C 3 HOH A 119 419 80 HOH HOH . C 3 HOH A 120 420 140 HOH HOH . C 3 HOH A 121 421 155 HOH HOH . C 3 HOH A 122 422 34 HOH HOH . C 3 HOH A 123 423 118 HOH HOH . C 3 HOH A 124 424 102 HOH HOH . C 3 HOH A 125 425 111 HOH HOH . C 3 HOH A 126 426 127 HOH HOH . C 3 HOH A 127 427 174 HOH HOH . C 3 HOH A 128 428 84 HOH HOH . C 3 HOH A 129 429 125 HOH HOH . C 3 HOH A 130 430 154 HOH HOH . C 3 HOH A 131 431 105 HOH HOH . C 3 HOH A 132 432 149 HOH HOH . C 3 HOH A 133 433 96 HOH HOH . C 3 HOH A 134 434 166 HOH HOH . C 3 HOH A 135 435 176 HOH HOH . C 3 HOH A 136 436 97 HOH HOH . C 3 HOH A 137 437 67 HOH HOH . C 3 HOH A 138 438 129 HOH HOH . C 3 HOH A 139 439 148 HOH HOH . C 3 HOH A 140 440 66 HOH HOH . C 3 HOH A 141 441 167 HOH HOH . C 3 HOH A 142 442 95 HOH HOH . C 3 HOH A 143 443 153 HOH HOH . C 3 HOH A 144 444 73 HOH HOH . C 3 HOH A 145 445 130 HOH HOH . C 3 HOH A 146 446 157 HOH HOH . C 3 HOH A 147 447 144 HOH HOH . C 3 HOH A 148 448 88 HOH HOH . C 3 HOH A 149 449 90 HOH HOH . C 3 HOH A 150 450 159 HOH HOH . C 3 HOH A 151 451 150 HOH HOH . C 3 HOH A 152 452 123 HOH HOH . C 3 HOH A 153 453 98 HOH HOH . C 3 HOH A 154 454 145 HOH HOH . C 3 HOH A 155 455 143 HOH HOH . C 3 HOH A 156 456 131 HOH HOH . C 3 HOH A 157 457 170 HOH HOH . C 3 HOH A 158 458 152 HOH HOH . C 3 HOH A 159 459 104 HOH HOH . C 3 HOH A 160 460 93 HOH HOH . C 3 HOH A 161 461 161 HOH HOH . C 3 HOH A 162 462 132 HOH HOH . C 3 HOH A 163 463 101 HOH HOH . C 3 HOH A 164 464 120 HOH HOH . C 3 HOH A 165 465 116 HOH HOH . C 3 HOH A 166 466 87 HOH HOH . C 3 HOH A 167 467 94 HOH HOH . C 3 HOH A 168 468 179 HOH HOH . C 3 HOH A 169 469 128 HOH HOH . C 3 HOH A 170 470 171 HOH HOH . C 3 HOH A 171 471 91 HOH HOH . C 3 HOH A 172 472 112 HOH HOH . C 3 HOH A 173 473 89 HOH HOH . C 3 HOH A 174 474 169 HOH HOH . C 3 HOH A 175 475 164 HOH HOH . C 3 HOH A 176 476 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 NEU . A . B 2 8.989 19.129 13.364 0.5 7.48 ? N2 NEU 201 A 1 HETATM 2 N N2 NEU . B . B 2 10.036 19.55 9.827 0.5 6.43 ? N2 NEU 201 A 1 HETATM 3 C C1 NEU . A . B 2 8.241 18.513 12.386 0.5 8.11 ? C1 NEU 201 A 1 HETATM 4 C C1 NEU . B . B 2 9.852 19.642 11.184 0.5 6.58 ? C1 NEU 201 A 1 HETATM 5 C C10 NEU . A . B 2 8.622 18.774 11.004 0.5 7.17 ? C10 NEU 201 A 1 HETATM 6 C C10 NEU . B . B 2 8.8 18.821 11.761 0.5 7.3 ? C10 NEU 201 A 1 HETATM 7 N N9 NEU . A . B 2 7.942 18.211 9.962 0.5 8.44 ? N9 NEU 201 A 1 HETATM 8 N N9 NEU . B . B 2 8.545 18.86 13.102 0.5 8.69 ? N9 NEU 201 A 1 HETATM 9 C C8 NEU . A . B 2 8.338 18.502 8.746 0.5 9.58 ? C8 NEU 201 A 1 HETATM 10 C C8 NEU . B . B 2 7.589 18.086 13.556 0.5 12.39 ? C8 NEU 201 A 1 HETATM 11 C C7 NEU . A . B 2 9.439 19.35 8.512 0.5 9.9 ? C7 NEU 201 A 1 HETATM 12 C C7 NEU . B . B 2 6.833 17.263 12.691 0.5 11.82 ? C7 NEU 201 A 1 HETATM 13 N N6 NEU . A . B 2 10.11 19.913 9.501 0.5 7.44 ? N6 NEU 201 A 1 HETATM 14 N N6 NEU . B . B 2 7.053 17.216 11.391 0.5 10.75 ? N6 NEU 201 A 1 HETATM 15 C C5 NEU . A . B 2 9.714 19.626 10.771 0.5 6.97 ? C5 NEU 201 A 1 HETATM 16 C C5 NEU . B . B 2 8.051 17.997 10.904 0.5 8.37 ? C5 NEU 201 A 1 HETATM 17 N N4 NEU . A . B 2 10.409 20.205 11.816 0.5 6.37 ? N4 NEU 201 A 1 HETATM 18 N N4 NEU . B . B 2 8.296 17.969 9.55 0.5 7.78 ? N4 NEU 201 A 1 HETATM 19 C C3 NEU . A . B 2 10.048 19.951 13.063 0.5 5.54 ? C3 NEU 201 A 1 HETATM 20 C C3 NEU . B . B 2 9.262 18.725 9.046 0.5 8.33 ? C3 NEU 201 A 1 HETATM 21 N N13 NEU . A . B 2 10.709 20.499 14.085 0.5 7.62 ? N13 NEU 201 A 1 HETATM 22 N N13 NEU . B . B 2 9.505 18.704 7.736 0.5 11.14 ? N13 NEU 201 A 1 HETATM 23 C C16 NEU . A . B 2 7.589 17.871 7.607 0.5 11.56 ? C16 NEU 201 A 1 HETATM 24 C C16 NEU . B . B 2 7.299 18.119 15.033 0.5 16.03 ? C16 NEU 201 A 1 HETATM 25 O O21 NEU . A . B 2 6.241 17.629 7.991 0.5 20.98 ? O21 NEU 201 A 1 HETATM 26 O O21 NEU . B . B 2 7.113 16.791 15.503 0.5 21.76 ? O21 NEU 201 A 1 HETATM 27 C C26 NEU . A . B 2 8.243 16.549 7.205 0.5 18.45 ? C26 NEU 201 A 1 HETATM 28 C C26 NEU . B . B 2 6.045 18.944 15.328 0.5 20.32 ? C26 NEU 201 A 1 HETATM 29 O O22 NEU . A . B 2 7.785 16.196 5.909 0.5 21.99 ? O22 NEU 201 A 1 HETATM 30 O O22 NEU . B . B 2 5.179 18.864 14.196 0.5 27.56 ? O22 NEU 201 A 1 HETATM 31 C C28 NEU . A . B 2 7.938 15.422 8.173 0.5 19.22 ? C28 NEU 201 A 1 HETATM 32 C C28 NEU . B . B 2 6.375 20.397 15.61 0.5 23.68 ? C28 NEU 201 A 1 HETATM 33 O O24 NEU . A . B 2 8.809 14.314 7.96 0.5 15.05 ? O24 NEU 201 A 1 HETATM 34 O O24 NEU . B . B 2 5.702 21.265 14.701 0.5 21.61 ? O24 NEU 201 A 1 HETATM 35 O O11 NEU . A . B 2 7.306 17.788 12.701 0.5 10.19 ? O11 NEU 201 A 1 HETATM 36 O O11 NEU . B . B 2 10.556 20.393 11.847 0.5 7.08 ? O11 NEU 201 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #