data_7KPB
#
_model_server_result.job_id            YUD8yySz4kFcFZmXKtnmEw 
_model_server_result.datetime_utc      '2024-11-16 10:38:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":201}' 
#
_entry.id    7KPB 
#
_exptl.entry_id    7KPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KPB 
_cell.length_a            99.51 
_cell.length_b            99.51 
_cell.length_c            311.35 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             O 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 70 A CYS 69 1_555 A SG CYS 102 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 B SG CYS 70 B CYS 69 1_555 B SG CYS 102 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 70 C CYS 69 1_555 C SG CYS 102 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 D SG CYS 4 F CYS 15 1_555 D SG CYS 18 F CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 D SG CYS 19 F CYS 30 1_555 D SG CYS 32 F CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 D SG CYS 22 F CYS 33 1_555 D SG CYS 41 F CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 D SG CYS 44 F CYS 55 1_555 D SG CYS 59 F CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 D SG CYS 62 F CYS 73 1_555 D SG CYS 77 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 D SG CYS 65 F CYS 76 1_555 D SG CYS 85 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 D SG CYS 87 F CYS 98 1_555 D SG CYS 103 F CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 D SG CYS 106 F CYS 117 1_555 D SG CYS 118 F CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 D SG CYS 109 F CYS 120 1_555 D SG CYS 126 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf13 D SG CYS 128 F CYS 139 1_555 D SG CYS 139 F CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 E SG CYS 4 E CYS 15 1_555 E SG CYS 18 E CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf15 E SG CYS 19 E CYS 30 1_555 E SG CYS 32 E CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf16 E SG CYS 22 E CYS 33 1_555 E SG CYS 41 E CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf17 E SG CYS 44 E CYS 55 1_555 E SG CYS 59 E CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf18 E SG CYS 62 E CYS 73 1_555 E SG CYS 77 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf19 E SG CYS 65 E CYS 76 1_555 E SG CYS 85 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf20 E SG CYS 87 E CYS 98 1_555 E SG CYS 103 E CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf21 E SG CYS 106 E CYS 117 1_555 E SG CYS 118 E CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf22 E SG CYS 109 E CYS 120 1_555 E SG CYS 126 E CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf23 E SG CYS 128 E CYS 139 1_555 E SG CYS 139 E CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf24 F SG CYS 23 L CYS 23 1_555 F SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf25 F SG CYS 134 L CYS 134 1_555 F SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf26 G SG CYS 22 H CYS 22 1_555 G SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf27 G SG CYS 148 H CYS 148 1_555 G SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 E ND2 ASN 111 E ASN 122 1_555 O C1 NAG . E NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 322 n n 
C1 O1 NAG sing 323 n n 
C1 O5 NAG sing 324 n n 
C1 H1 NAG sing 325 n n 
C2 C3 NAG sing 326 n n 
C2 N2 NAG sing 327 n n 
C2 H2 NAG sing 328 n n 
C3 C4 NAG sing 329 n n 
C3 O3 NAG sing 330 n n 
C3 H3 NAG sing 331 n n 
C4 C5 NAG sing 332 n n 
C4 O4 NAG sing 333 n n 
C4 H4 NAG sing 334 n n 
C5 C6 NAG sing 335 n n 
C5 O5 NAG sing 336 n n 
C5 H5 NAG sing 337 n n 
C6 O6 NAG sing 338 n n 
C6 H61 NAG sing 339 n n 
C6 H62 NAG sing 340 n n 
C7 C8 NAG sing 341 n n 
C7 N2 NAG sing 342 n n 
C7 O7 NAG doub 343 n n 
C8 H81 NAG sing 344 n n 
C8 H82 NAG sing 345 n n 
C8 H83 NAG sing 346 n n 
N2 HN2 NAG sing 347 n n 
O1 HO1 NAG sing 348 n n 
O3 HO3 NAG sing 349 n n 
O4 HO4 NAG sing 350 n n 
O6 HO6 NAG sing 351 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7KPB 
_atom_sites.fract_transf_matrix[1][1]    0.010049 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010049 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 5 GOL A 1 201 1 GOL GOL . 
I 5 GOL B 1 201 7 GOL GOL . 
J 5 GOL B 1 202 8 GOL GOL . 
K 6 D84 C 1 201 1 D84 733 . 
L 5 GOL F 1 201 2 GOL GOL . 
M 5 GOL F 1 202 3 GOL GOL . 
N 5 GOL F 1 203 4 GOL GOL . 
O 7 NAG E 1 201 200 NAG NAG . 
P 5 GOL E 1 202 5 GOL GOL . 
Q 5 GOL E 1 203 6 GOL GOL . 
R 5 GOL L 1 301 9 GOL GOL . 
S 8 HOH A 1 301 3 HOH HOH . 
S 8 HOH A 2 302 17 HOH HOH . 
S 8 HOH A 3 303 15 HOH HOH . 
S 8 HOH A 4 304 1 HOH HOH . 
T 8 HOH B 1 301 2 HOH HOH . 
T 8 HOH B 2 302 5 HOH HOH . 
T 8 HOH B 3 303 13 HOH HOH . 
T 8 HOH B 4 304 14 HOH HOH . 
T 8 HOH B 5 305 4 HOH HOH . 
U 8 HOH C 1 301 16 HOH HOH . 
U 8 HOH C 2 302 11 HOH HOH . 
U 8 HOH C 3 303 6 HOH HOH . 
U 8 HOH C 4 304 12 HOH HOH . 
U 8 HOH C 5 305 7 HOH HOH . 
V 8 HOH F 1 301 8 HOH HOH . 
W 8 HOH E 1 301 19 HOH HOH . 
W 8 HOH E 2 302 18 HOH HOH . 
W 8 HOH E 3 303 20 HOH HOH . 
W 8 HOH E 4 304 9 HOH HOH . 
X 8 HOH L 1 401 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . O 7 -31.99 106.26 41.92 1 106.42 ? C1 NAG 201 E 1 
HETATM 2 C C2 NAG . . . O 7 -31.797 107.723 41.447 1 108.39 ? C2 NAG 201 E 1 
HETATM 3 C C3 NAG . . . O 7 -30.382 107.925 40.87 1 113.37 ? C3 NAG 201 E 1 
HETATM 4 C C4 NAG . . . O 7 -29.311 107.295 41.754 1 109.96 ? C4 NAG 201 E 1 
HETATM 5 C C5 NAG . . . O 7 -29.698 105.871 42.119 1 111.61 ? C5 NAG 201 E 1 
HETATM 6 C C6 NAG . . . O 7 -28.715 105.185 43.036 1 115.34 ? C6 NAG 201 E 1 
HETATM 7 C C7 NAG . . . O 7 -32.93 109.252 39.843 1 110.55 ? C7 NAG 201 E 1 
HETATM 8 C C8 NAG . . . O 7 -34.058 109.369 38.857 1 92.83 ? C8 NAG 201 E 1 
HETATM 9 N N2 NAG . . . O 7 -32.811 108.064 40.456 1 106.76 ? N2 NAG 201 E 1 
HETATM 10 O O3 NAG . . . O 7 -30.117 109.319 40.75 1 107.86 ? O3 NAG 201 E 1 
HETATM 11 O O4 NAG . . . O 7 -28.058 107.279 41.08 1 113.73 ? O4 NAG 201 E 1 
HETATM 12 O O5 NAG . . . O 7 -30.953 105.905 42.799 1 109.08 ? O5 NAG 201 E 1 
HETATM 13 O O6 NAG . . . O 7 -28.747 103.779 42.836 1 107.98 ? O6 NAG 201 E 1 
HETATM 14 O O7 NAG . . . O 7 -32.169 110.188 40.069 1 115.06 ? O7 NAG 201 E 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#