data_7KPY
#
_model_server_result.job_id            81NrvOaP2ph_iXoSdCJV4w 
_model_server_result.datetime_utc      '2024-11-13 14:16:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kpy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1201}' 
#
_entry.id    7KPY 
#
_exptl.entry_id    7KPY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.246 
_cell.angle_gamma         90 
_cell.entry_id            7KPY 
_cell.length_a            89.88 
_cell.length_b            34.68 
_cell.length_c            90.74 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KPY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7KPY 
_atom_sites.fract_transf_matrix[1][1]    0.011126 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005486 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028835 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 1201 4 EDO EDO . 
D 3 WU1 A 1 1202 2 WU1 LIG . 
E 2 EDO B 1 1201 2 EDO EDO . 
F 2 EDO B 1 1202 3 EDO EDO . 
G 3 WU1 B 1 1203 1 WU1 LIG . 
H 4 HOH A 1 1301 72 HOH HOH . 
H 4 HOH A 2 1302 164 HOH HOH . 
H 4 HOH A 3 1303 126 HOH HOH . 
H 4 HOH A 4 1304 88 HOH HOH . 
H 4 HOH A 5 1305 192 HOH HOH . 
H 4 HOH A 6 1306 81 HOH HOH . 
H 4 HOH A 7 1307 176 HOH HOH . 
H 4 HOH A 8 1308 139 HOH HOH . 
H 4 HOH A 9 1309 188 HOH HOH . 
H 4 HOH A 10 1310 55 HOH HOH . 
H 4 HOH A 11 1311 30 HOH HOH . 
H 4 HOH A 12 1312 142 HOH HOH . 
H 4 HOH A 13 1313 4 HOH HOH . 
H 4 HOH A 14 1314 159 HOH HOH . 
H 4 HOH A 15 1315 133 HOH HOH . 
H 4 HOH A 16 1316 31 HOH HOH . 
H 4 HOH A 17 1317 21 HOH HOH . 
H 4 HOH A 18 1318 98 HOH HOH . 
H 4 HOH A 19 1319 28 HOH HOH . 
H 4 HOH A 20 1320 85 HOH HOH . 
H 4 HOH A 21 1321 114 HOH HOH . 
H 4 HOH A 22 1322 43 HOH HOH . 
H 4 HOH A 23 1323 47 HOH HOH . 
H 4 HOH A 24 1324 14 HOH HOH . 
H 4 HOH A 25 1325 51 HOH HOH . 
H 4 HOH A 26 1326 20 HOH HOH . 
H 4 HOH A 27 1327 110 HOH HOH . 
H 4 HOH A 28 1328 162 HOH HOH . 
H 4 HOH A 29 1329 77 HOH HOH . 
H 4 HOH A 30 1330 129 HOH HOH . 
H 4 HOH A 31 1331 169 HOH HOH . 
H 4 HOH A 32 1332 102 HOH HOH . 
H 4 HOH A 33 1333 84 HOH HOH . 
H 4 HOH A 34 1334 7 HOH HOH . 
H 4 HOH A 35 1335 29 HOH HOH . 
H 4 HOH A 36 1336 130 HOH HOH . 
H 4 HOH A 37 1337 38 HOH HOH . 
H 4 HOH A 38 1338 165 HOH HOH . 
H 4 HOH A 39 1339 65 HOH HOH . 
H 4 HOH A 40 1340 58 HOH HOH . 
H 4 HOH A 41 1341 73 HOH HOH . 
H 4 HOH A 42 1342 116 HOH HOH . 
H 4 HOH A 43 1343 90 HOH HOH . 
H 4 HOH A 44 1344 16 HOH HOH . 
H 4 HOH A 45 1345 53 HOH HOH . 
H 4 HOH A 46 1346 5 HOH HOH . 
H 4 HOH A 47 1347 200 HOH HOH . 
H 4 HOH A 48 1348 96 HOH HOH . 
H 4 HOH A 49 1349 56 HOH HOH . 
H 4 HOH A 50 1350 66 HOH HOH . 
H 4 HOH A 51 1351 17 HOH HOH . 
H 4 HOH A 52 1352 189 HOH HOH . 
H 4 HOH A 53 1353 95 HOH HOH . 
H 4 HOH A 54 1354 54 HOH HOH . 
H 4 HOH A 55 1355 184 HOH HOH . 
H 4 HOH A 56 1356 187 HOH HOH . 
H 4 HOH A 57 1357 67 HOH HOH . 
H 4 HOH A 58 1358 156 HOH HOH . 
H 4 HOH A 59 1359 49 HOH HOH . 
H 4 HOH A 60 1360 172 HOH HOH . 
H 4 HOH A 61 1361 40 HOH HOH . 
H 4 HOH A 62 1362 117 HOH HOH . 
H 4 HOH A 63 1363 32 HOH HOH . 
H 4 HOH A 64 1364 74 HOH HOH . 
H 4 HOH A 65 1365 190 HOH HOH . 
H 4 HOH A 66 1366 145 HOH HOH . 
H 4 HOH A 67 1367 138 HOH HOH . 
H 4 HOH A 68 1368 119 HOH HOH . 
H 4 HOH A 69 1369 104 HOH HOH . 
H 4 HOH A 70 1370 83 HOH HOH . 
H 4 HOH A 71 1371 112 HOH HOH . 
H 4 HOH A 72 1372 10 HOH HOH . 
H 4 HOH A 73 1373 170 HOH HOH . 
H 4 HOH A 74 1374 1 HOH HOH . 
H 4 HOH A 75 1375 91 HOH HOH . 
H 4 HOH A 76 1376 177 HOH HOH . 
H 4 HOH A 77 1377 106 HOH HOH . 
H 4 HOH A 78 1378 204 HOH HOH . 
H 4 HOH A 79 1379 137 HOH HOH . 
H 4 HOH A 80 1380 127 HOH HOH . 
H 4 HOH A 81 1381 179 HOH HOH . 
H 4 HOH A 82 1382 46 HOH HOH . 
H 4 HOH A 83 1383 203 HOH HOH . 
H 4 HOH A 84 1384 109 HOH HOH . 
H 4 HOH A 85 1385 62 HOH HOH . 
H 4 HOH A 86 1386 149 HOH HOH . 
H 4 HOH A 87 1387 78 HOH HOH . 
H 4 HOH A 88 1388 168 HOH HOH . 
H 4 HOH A 89 1389 205 HOH HOH . 
H 4 HOH A 90 1390 42 HOH HOH . 
H 4 HOH A 91 1391 185 HOH HOH . 
H 4 HOH A 92 1392 155 HOH HOH . 
H 4 HOH A 93 1393 113 HOH HOH . 
H 4 HOH A 94 1394 22 HOH HOH . 
H 4 HOH A 95 1395 163 HOH HOH . 
H 4 HOH A 96 1396 39 HOH HOH . 
H 4 HOH A 97 1397 35 HOH HOH . 
H 4 HOH A 98 1398 131 HOH HOH . 
H 4 HOH A 99 1399 186 HOH HOH . 
H 4 HOH A 100 1400 153 HOH HOH . 
H 4 HOH A 101 1401 70 HOH HOH . 
H 4 HOH A 102 1402 124 HOH HOH . 
H 4 HOH A 103 1403 144 HOH HOH . 
H 4 HOH A 104 1404 201 HOH HOH . 
H 4 HOH A 105 1405 100 HOH HOH . 
H 4 HOH A 106 1406 60 HOH HOH . 
I 4 HOH B 1 1301 86 HOH HOH . 
I 4 HOH B 2 1302 181 HOH HOH . 
I 4 HOH B 3 1303 99 HOH HOH . 
I 4 HOH B 4 1304 89 HOH HOH . 
I 4 HOH B 5 1305 148 HOH HOH . 
I 4 HOH B 6 1306 9 HOH HOH . 
I 4 HOH B 7 1307 34 HOH HOH . 
I 4 HOH B 8 1308 115 HOH HOH . 
I 4 HOH B 9 1309 76 HOH HOH . 
I 4 HOH B 10 1310 79 HOH HOH . 
I 4 HOH B 11 1311 11 HOH HOH . 
I 4 HOH B 12 1312 12 HOH HOH . 
I 4 HOH B 13 1313 166 HOH HOH . 
I 4 HOH B 14 1314 128 HOH HOH . 
I 4 HOH B 15 1315 64 HOH HOH . 
I 4 HOH B 16 1316 191 HOH HOH . 
I 4 HOH B 17 1317 26 HOH HOH . 
I 4 HOH B 18 1318 105 HOH HOH . 
I 4 HOH B 19 1319 8 HOH HOH . 
I 4 HOH B 20 1320 151 HOH HOH . 
I 4 HOH B 21 1321 195 HOH HOH . 
I 4 HOH B 22 1322 52 HOH HOH . 
I 4 HOH B 23 1323 61 HOH HOH . 
I 4 HOH B 24 1324 154 HOH HOH . 
I 4 HOH B 25 1325 160 HOH HOH . 
I 4 HOH B 26 1326 199 HOH HOH . 
I 4 HOH B 27 1327 182 HOH HOH . 
I 4 HOH B 28 1328 82 HOH HOH . 
I 4 HOH B 29 1329 134 HOH HOH . 
I 4 HOH B 30 1330 36 HOH HOH . 
I 4 HOH B 31 1331 13 HOH HOH . 
I 4 HOH B 32 1332 15 HOH HOH . 
I 4 HOH B 33 1333 24 HOH HOH . 
I 4 HOH B 34 1334 23 HOH HOH . 
I 4 HOH B 35 1335 68 HOH HOH . 
I 4 HOH B 36 1336 94 HOH HOH . 
I 4 HOH B 37 1337 2 HOH HOH . 
I 4 HOH B 38 1338 45 HOH HOH . 
I 4 HOH B 39 1339 41 HOH HOH . 
I 4 HOH B 40 1340 157 HOH HOH . 
I 4 HOH B 41 1341 57 HOH HOH . 
I 4 HOH B 42 1342 75 HOH HOH . 
I 4 HOH B 43 1343 87 HOH HOH . 
I 4 HOH B 44 1344 103 HOH HOH . 
I 4 HOH B 45 1345 125 HOH HOH . 
I 4 HOH B 46 1346 152 HOH HOH . 
I 4 HOH B 47 1347 97 HOH HOH . 
I 4 HOH B 48 1348 107 HOH HOH . 
I 4 HOH B 49 1349 123 HOH HOH . 
I 4 HOH B 50 1350 6 HOH HOH . 
I 4 HOH B 51 1351 19 HOH HOH . 
I 4 HOH B 52 1352 93 HOH HOH . 
I 4 HOH B 53 1353 50 HOH HOH . 
I 4 HOH B 54 1354 101 HOH HOH . 
I 4 HOH B 55 1355 122 HOH HOH . 
I 4 HOH B 56 1356 80 HOH HOH . 
I 4 HOH B 57 1357 33 HOH HOH . 
I 4 HOH B 58 1358 59 HOH HOH . 
I 4 HOH B 59 1359 135 HOH HOH . 
I 4 HOH B 60 1360 27 HOH HOH . 
I 4 HOH B 61 1361 174 HOH HOH . 
I 4 HOH B 62 1362 118 HOH HOH . 
I 4 HOH B 63 1363 173 HOH HOH . 
I 4 HOH B 64 1364 18 HOH HOH . 
I 4 HOH B 65 1365 48 HOH HOH . 
I 4 HOH B 66 1366 141 HOH HOH . 
I 4 HOH B 67 1367 25 HOH HOH . 
I 4 HOH B 68 1368 198 HOH HOH . 
I 4 HOH B 69 1369 136 HOH HOH . 
I 4 HOH B 70 1370 140 HOH HOH . 
I 4 HOH B 71 1371 146 HOH HOH . 
I 4 HOH B 72 1372 147 HOH HOH . 
I 4 HOH B 73 1373 178 HOH HOH . 
I 4 HOH B 74 1374 202 HOH HOH . 
I 4 HOH B 75 1375 183 HOH HOH . 
I 4 HOH B 76 1376 161 HOH HOH . 
I 4 HOH B 77 1377 196 HOH HOH . 
I 4 HOH B 78 1378 120 HOH HOH . 
I 4 HOH B 79 1379 108 HOH HOH . 
I 4 HOH B 80 1380 167 HOH HOH . 
I 4 HOH B 81 1381 63 HOH HOH . 
I 4 HOH B 82 1382 175 HOH HOH . 
I 4 HOH B 83 1383 111 HOH HOH . 
I 4 HOH B 84 1384 171 HOH HOH . 
I 4 HOH B 85 1385 69 HOH HOH . 
I 4 HOH B 86 1386 193 HOH HOH . 
I 4 HOH B 87 1387 44 HOH HOH . 
I 4 HOH B 88 1388 197 HOH HOH . 
I 4 HOH B 89 1389 194 HOH HOH . 
I 4 HOH B 90 1390 121 HOH HOH . 
I 4 HOH B 91 1391 158 HOH HOH . 
I 4 HOH B 92 1392 37 HOH HOH . 
I 4 HOH B 93 1393 180 HOH HOH . 
I 4 HOH B 94 1394 71 HOH HOH . 
I 4 HOH B 95 1395 132 HOH HOH . 
I 4 HOH B 96 1396 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 2 28.508 19.437 4.615 1 25.3 ? C1 EDO 1201 B 1 
HETATM 2 O O1 EDO . . . E 2 29.081 18.291 5.253 1 45.56 ? O1 EDO 1201 B 1 
HETATM 3 C C2 EDO . . . E 2 27.064 19.104 4.243 1 30.66 ? C2 EDO 1201 B 1 
HETATM 4 O O2 EDO . . . E 2 26.316 18.776 5.423 1 32.56 ? O2 EDO 1201 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#