data_7KQZ # _model_server_result.job_id jddVU4KyJnYjB_DpxW-WkA _model_server_result.datetime_utc '2024-12-02 14:40:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":706}' # _entry.id 7KQZ # _exptl.entry_id 7KQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KQZ _cell.length_a 107.2 _cell.length_b 107.2 _cell.length_c 116.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall 'P 6c' _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 53.6 92.837923 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -53.6 92.837923 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7KQZ _atom_sites.fract_transf_matrix[1][1] 0.009328 _atom_sites.fract_transf_matrix[1][2] 0.005386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WTA A 1 701 684 WTA ERX . C 3 EDO A 1 702 685 EDO EDO . D 3 EDO A 1 703 686 EDO EDO . E 3 EDO A 1 704 687 EDO EDO . F 3 EDO A 1 705 688 EDO EDO . G 3 EDO A 1 706 689 EDO EDO . H 4 HOH A 1 801 276 HOH HOH . H 4 HOH A 2 802 131 HOH HOH . H 4 HOH A 3 803 307 HOH HOH . H 4 HOH A 4 804 316 HOH HOH . H 4 HOH A 5 805 268 HOH HOH . H 4 HOH A 6 806 281 HOH HOH . H 4 HOH A 7 807 386 HOH HOH . H 4 HOH A 8 808 205 HOH HOH . H 4 HOH A 9 809 406 HOH HOH . H 4 HOH A 10 810 279 HOH HOH . H 4 HOH A 11 811 385 HOH HOH . H 4 HOH A 12 812 133 HOH HOH . H 4 HOH A 13 813 304 HOH HOH . H 4 HOH A 14 814 325 HOH HOH . H 4 HOH A 15 815 89 HOH HOH . H 4 HOH A 16 816 183 HOH HOH . H 4 HOH A 17 817 300 HOH HOH . H 4 HOH A 18 818 116 HOH HOH . H 4 HOH A 19 819 141 HOH HOH . H 4 HOH A 20 820 380 HOH HOH . H 4 HOH A 21 821 76 HOH HOH . H 4 HOH A 22 822 152 HOH HOH . H 4 HOH A 23 823 125 HOH HOH . H 4 HOH A 24 824 332 HOH HOH . H 4 HOH A 25 825 28 HOH HOH . H 4 HOH A 26 826 382 HOH HOH . H 4 HOH A 27 827 310 HOH HOH . H 4 HOH A 28 828 369 HOH HOH . H 4 HOH A 29 829 216 HOH HOH . H 4 HOH A 30 830 114 HOH HOH . H 4 HOH A 31 831 149 HOH HOH . H 4 HOH A 32 832 68 HOH HOH . H 4 HOH A 33 833 111 HOH HOH . H 4 HOH A 34 834 97 HOH HOH . H 4 HOH A 35 835 265 HOH HOH . H 4 HOH A 36 836 271 HOH HOH . H 4 HOH A 37 837 10 HOH HOH . H 4 HOH A 38 838 70 HOH HOH . H 4 HOH A 39 839 85 HOH HOH . H 4 HOH A 40 840 54 HOH HOH . H 4 HOH A 41 841 287 HOH HOH . H 4 HOH A 42 842 24 HOH HOH . H 4 HOH A 43 843 335 HOH HOH . H 4 HOH A 44 844 389 HOH HOH . H 4 HOH A 45 845 84 HOH HOH . H 4 HOH A 46 846 317 HOH HOH . H 4 HOH A 47 847 67 HOH HOH . H 4 HOH A 48 848 179 HOH HOH . H 4 HOH A 49 849 150 HOH HOH . H 4 HOH A 50 850 91 HOH HOH . H 4 HOH A 51 851 45 HOH HOH . H 4 HOH A 52 852 360 HOH HOH . H 4 HOH A 53 853 87 HOH HOH . H 4 HOH A 54 854 144 HOH HOH . H 4 HOH A 55 855 110 HOH HOH . H 4 HOH A 56 856 320 HOH HOH . H 4 HOH A 57 857 290 HOH HOH . H 4 HOH A 58 858 235 HOH HOH . H 4 HOH A 59 859 191 HOH HOH . H 4 HOH A 60 860 31 HOH HOH . H 4 HOH A 61 861 368 HOH HOH . H 4 HOH A 62 862 34 HOH HOH . H 4 HOH A 63 863 44 HOH HOH . H 4 HOH A 64 864 364 HOH HOH . H 4 HOH A 65 865 64 HOH HOH . H 4 HOH A 66 866 37 HOH HOH . H 4 HOH A 67 867 134 HOH HOH . H 4 HOH A 68 868 50 HOH HOH . H 4 HOH A 69 869 226 HOH HOH . H 4 HOH A 70 870 9 HOH HOH . H 4 HOH A 71 871 247 HOH HOH . H 4 HOH A 72 872 35 HOH HOH . H 4 HOH A 73 873 113 HOH HOH . H 4 HOH A 74 874 75 HOH HOH . H 4 HOH A 75 875 359 HOH HOH . H 4 HOH A 76 876 25 HOH HOH . H 4 HOH A 77 877 249 HOH HOH . H 4 HOH A 78 878 93 HOH HOH . H 4 HOH A 79 879 175 HOH HOH . H 4 HOH A 80 880 120 HOH HOH . H 4 HOH A 81 881 285 HOH HOH . H 4 HOH A 82 882 105 HOH HOH . H 4 HOH A 83 883 156 HOH HOH . H 4 HOH A 84 884 326 HOH HOH . H 4 HOH A 85 885 108 HOH HOH . H 4 HOH A 86 886 379 HOH HOH . H 4 HOH A 87 887 289 HOH HOH . H 4 HOH A 88 888 5 HOH HOH . H 4 HOH A 89 889 62 HOH HOH . H 4 HOH A 90 890 344 HOH HOH . H 4 HOH A 91 891 16 HOH HOH . H 4 HOH A 92 892 15 HOH HOH . H 4 HOH A 93 893 162 HOH HOH . H 4 HOH A 94 894 94 HOH HOH . H 4 HOH A 95 895 337 HOH HOH . H 4 HOH A 96 896 295 HOH HOH . H 4 HOH A 97 897 57 HOH HOH . H 4 HOH A 98 898 176 HOH HOH . H 4 HOH A 99 899 23 HOH HOH . H 4 HOH A 100 900 69 HOH HOH . H 4 HOH A 101 901 38 HOH HOH . H 4 HOH A 102 902 14 HOH HOH . H 4 HOH A 103 903 12 HOH HOH . H 4 HOH A 104 904 63 HOH HOH . H 4 HOH A 105 905 36 HOH HOH . H 4 HOH A 106 906 397 HOH HOH . H 4 HOH A 107 907 126 HOH HOH . H 4 HOH A 108 908 73 HOH HOH . H 4 HOH A 109 909 236 HOH HOH . H 4 HOH A 110 910 33 HOH HOH . H 4 HOH A 111 911 228 HOH HOH . H 4 HOH A 112 912 77 HOH HOH . H 4 HOH A 113 913 2 HOH HOH . H 4 HOH A 114 914 4 HOH HOH . H 4 HOH A 115 915 47 HOH HOH . H 4 HOH A 116 916 32 HOH HOH . H 4 HOH A 117 917 395 HOH HOH . H 4 HOH A 118 918 167 HOH HOH . H 4 HOH A 119 919 43 HOH HOH . H 4 HOH A 120 920 227 HOH HOH . H 4 HOH A 121 921 207 HOH HOH . H 4 HOH A 122 922 130 HOH HOH . H 4 HOH A 123 923 26 HOH HOH . H 4 HOH A 124 924 51 HOH HOH . H 4 HOH A 125 925 123 HOH HOH . H 4 HOH A 126 926 343 HOH HOH . H 4 HOH A 127 927 286 HOH HOH . H 4 HOH A 128 928 66 HOH HOH . H 4 HOH A 129 929 96 HOH HOH . H 4 HOH A 130 930 46 HOH HOH . H 4 HOH A 131 931 229 HOH HOH . H 4 HOH A 132 932 21 HOH HOH . H 4 HOH A 133 933 56 HOH HOH . H 4 HOH A 134 934 273 HOH HOH . H 4 HOH A 135 935 22 HOH HOH . H 4 HOH A 136 936 158 HOH HOH . H 4 HOH A 137 937 230 HOH HOH . H 4 HOH A 138 938 112 HOH HOH . H 4 HOH A 139 939 215 HOH HOH . H 4 HOH A 140 940 53 HOH HOH . H 4 HOH A 141 941 140 HOH HOH . H 4 HOH A 142 942 115 HOH HOH . H 4 HOH A 143 943 354 HOH HOH . H 4 HOH A 144 944 132 HOH HOH . H 4 HOH A 145 945 146 HOH HOH . H 4 HOH A 146 946 322 HOH HOH . H 4 HOH A 147 947 366 HOH HOH . H 4 HOH A 148 948 394 HOH HOH . H 4 HOH A 149 949 74 HOH HOH . H 4 HOH A 150 950 27 HOH HOH . H 4 HOH A 151 951 154 HOH HOH . H 4 HOH A 152 952 204 HOH HOH . H 4 HOH A 153 953 122 HOH HOH . H 4 HOH A 154 954 195 HOH HOH . H 4 HOH A 155 955 109 HOH HOH . H 4 HOH A 156 956 396 HOH HOH . H 4 HOH A 157 957 103 HOH HOH . H 4 HOH A 158 958 142 HOH HOH . H 4 HOH A 159 959 90 HOH HOH . H 4 HOH A 160 960 261 HOH HOH . H 4 HOH A 161 961 348 HOH HOH . H 4 HOH A 162 962 197 HOH HOH . H 4 HOH A 163 963 237 HOH HOH . H 4 HOH A 164 964 59 HOH HOH . H 4 HOH A 165 965 277 HOH HOH . H 4 HOH A 166 966 39 HOH HOH . H 4 HOH A 167 967 60 HOH HOH . H 4 HOH A 168 968 138 HOH HOH . H 4 HOH A 169 969 55 HOH HOH . H 4 HOH A 170 970 48 HOH HOH . H 4 HOH A 171 971 256 HOH HOH . H 4 HOH A 172 972 198 HOH HOH . H 4 HOH A 173 973 17 HOH HOH . H 4 HOH A 174 974 79 HOH HOH . H 4 HOH A 175 975 159 HOH HOH . H 4 HOH A 176 976 341 HOH HOH . H 4 HOH A 177 977 269 HOH HOH . H 4 HOH A 178 978 253 HOH HOH . H 4 HOH A 179 979 3 HOH HOH . H 4 HOH A 180 980 209 HOH HOH . H 4 HOH A 181 981 143 HOH HOH . H 4 HOH A 182 982 65 HOH HOH . H 4 HOH A 183 983 7 HOH HOH . H 4 HOH A 184 984 11 HOH HOH . H 4 HOH A 185 985 292 HOH HOH . H 4 HOH A 186 986 263 HOH HOH . H 4 HOH A 187 987 148 HOH HOH . H 4 HOH A 188 988 255 HOH HOH . H 4 HOH A 189 989 61 HOH HOH . H 4 HOH A 190 990 296 HOH HOH . H 4 HOH A 191 991 371 HOH HOH . H 4 HOH A 192 992 128 HOH HOH . H 4 HOH A 193 993 357 HOH HOH . H 4 HOH A 194 994 306 HOH HOH . H 4 HOH A 195 995 196 HOH HOH . H 4 HOH A 196 996 129 HOH HOH . H 4 HOH A 197 997 145 HOH HOH . H 4 HOH A 198 998 164 HOH HOH . H 4 HOH A 199 999 218 HOH HOH . H 4 HOH A 200 1000 106 HOH HOH . H 4 HOH A 201 1001 192 HOH HOH . H 4 HOH A 202 1002 71 HOH HOH . H 4 HOH A 203 1003 171 HOH HOH . H 4 HOH A 204 1004 18 HOH HOH . H 4 HOH A 205 1005 52 HOH HOH . H 4 HOH A 206 1006 329 HOH HOH . H 4 HOH A 207 1007 248 HOH HOH . H 4 HOH A 208 1008 117 HOH HOH . H 4 HOH A 209 1009 259 HOH HOH . H 4 HOH A 210 1010 403 HOH HOH . H 4 HOH A 211 1011 72 HOH HOH . H 4 HOH A 212 1012 362 HOH HOH . H 4 HOH A 213 1013 318 HOH HOH . H 4 HOH A 214 1014 188 HOH HOH . H 4 HOH A 215 1015 121 HOH HOH . H 4 HOH A 216 1016 78 HOH HOH . H 4 HOH A 217 1017 346 HOH HOH . H 4 HOH A 218 1018 136 HOH HOH . H 4 HOH A 219 1019 288 HOH HOH . H 4 HOH A 220 1020 180 HOH HOH . H 4 HOH A 221 1021 95 HOH HOH . H 4 HOH A 222 1022 333 HOH HOH . H 4 HOH A 223 1023 391 HOH HOH . H 4 HOH A 224 1024 182 HOH HOH . H 4 HOH A 225 1025 13 HOH HOH . H 4 HOH A 226 1026 107 HOH HOH . H 4 HOH A 227 1027 302 HOH HOH . H 4 HOH A 228 1028 49 HOH HOH . H 4 HOH A 229 1029 309 HOH HOH . H 4 HOH A 230 1030 81 HOH HOH . H 4 HOH A 231 1031 250 HOH HOH . H 4 HOH A 232 1032 124 HOH HOH . H 4 HOH A 233 1033 147 HOH HOH . H 4 HOH A 234 1034 88 HOH HOH . H 4 HOH A 235 1035 270 HOH HOH . H 4 HOH A 236 1036 82 HOH HOH . H 4 HOH A 237 1037 163 HOH HOH . H 4 HOH A 238 1038 169 HOH HOH . H 4 HOH A 239 1039 92 HOH HOH . H 4 HOH A 240 1040 251 HOH HOH . H 4 HOH A 241 1041 258 HOH HOH . H 4 HOH A 242 1042 101 HOH HOH . H 4 HOH A 243 1043 208 HOH HOH . H 4 HOH A 244 1044 331 HOH HOH . H 4 HOH A 245 1045 402 HOH HOH . H 4 HOH A 246 1046 118 HOH HOH . H 4 HOH A 247 1047 365 HOH HOH . H 4 HOH A 248 1048 291 HOH HOH . H 4 HOH A 249 1049 327 HOH HOH . H 4 HOH A 250 1050 135 HOH HOH . H 4 HOH A 251 1051 340 HOH HOH . H 4 HOH A 252 1052 282 HOH HOH . H 4 HOH A 253 1053 58 HOH HOH . H 4 HOH A 254 1054 392 HOH HOH . H 4 HOH A 255 1055 298 HOH HOH . H 4 HOH A 256 1056 272 HOH HOH . H 4 HOH A 257 1057 407 HOH HOH . H 4 HOH A 258 1058 177 HOH HOH . H 4 HOH A 259 1059 324 HOH HOH . H 4 HOH A 260 1060 224 HOH HOH . H 4 HOH A 261 1061 390 HOH HOH . H 4 HOH A 262 1062 173 HOH HOH . H 4 HOH A 263 1063 278 HOH HOH . H 4 HOH A 264 1064 388 HOH HOH . H 4 HOH A 265 1065 262 HOH HOH . H 4 HOH A 266 1066 370 HOH HOH . H 4 HOH A 267 1067 160 HOH HOH . H 4 HOH A 268 1068 404 HOH HOH . H 4 HOH A 269 1069 376 HOH HOH . H 4 HOH A 270 1070 301 HOH HOH . H 4 HOH A 271 1071 400 HOH HOH . H 4 HOH A 272 1072 338 HOH HOH . H 4 HOH A 273 1073 184 HOH HOH . H 4 HOH A 274 1074 283 HOH HOH . H 4 HOH A 275 1075 231 HOH HOH . H 4 HOH A 276 1076 311 HOH HOH . H 4 HOH A 277 1077 381 HOH HOH . H 4 HOH A 278 1078 312 HOH HOH . H 4 HOH A 279 1079 321 HOH HOH . H 4 HOH A 280 1080 275 HOH HOH . H 4 HOH A 281 1081 345 HOH HOH . H 4 HOH A 282 1082 374 HOH HOH . H 4 HOH A 283 1083 361 HOH HOH . H 4 HOH A 284 1084 372 HOH HOH . H 4 HOH A 285 1085 328 HOH HOH . H 4 HOH A 286 1086 294 HOH HOH . H 4 HOH A 287 1087 127 HOH HOH . H 4 HOH A 288 1088 267 HOH HOH . H 4 HOH A 289 1089 29 HOH HOH . H 4 HOH A 290 1090 399 HOH HOH . H 4 HOH A 291 1091 352 HOH HOH . H 4 HOH A 292 1092 305 HOH HOH . H 4 HOH A 293 1093 244 HOH HOH . H 4 HOH A 294 1094 187 HOH HOH . H 4 HOH A 295 1095 377 HOH HOH . H 4 HOH A 296 1096 260 HOH HOH . H 4 HOH A 297 1097 355 HOH HOH . H 4 HOH A 298 1098 40 HOH HOH . H 4 HOH A 299 1099 334 HOH HOH . H 4 HOH A 300 1100 284 HOH HOH . H 4 HOH A 301 1101 153 HOH HOH . H 4 HOH A 302 1102 206 HOH HOH . H 4 HOH A 303 1103 393 HOH HOH . H 4 HOH A 304 1104 297 HOH HOH . H 4 HOH A 305 1105 303 HOH HOH . H 4 HOH A 306 1106 155 HOH HOH . H 4 HOH A 307 1107 367 HOH HOH . H 4 HOH A 308 1108 239 HOH HOH . H 4 HOH A 309 1109 193 HOH HOH . H 4 HOH A 310 1110 172 HOH HOH . H 4 HOH A 311 1111 211 HOH HOH . H 4 HOH A 312 1112 314 HOH HOH . H 4 HOH A 313 1113 252 HOH HOH . H 4 HOH A 314 1114 373 HOH HOH . H 4 HOH A 315 1115 274 HOH HOH . H 4 HOH A 316 1116 194 HOH HOH . H 4 HOH A 317 1117 185 HOH HOH . H 4 HOH A 318 1118 100 HOH HOH . H 4 HOH A 319 1119 405 HOH HOH . H 4 HOH A 320 1120 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 18.456 52.188 13.223 1 45.34 ? C1 EDO 706 A 1 HETATM 2 O O1 EDO . . . G 3 19.59 52.074 12.366 1 40.6 ? O1 EDO 706 A 1 HETATM 3 C C2 EDO . . . G 3 18.109 50.784 13.691 1 44.33 ? C2 EDO 706 A 1 HETATM 4 O O2 EDO . . . G 3 19.17 50.339 14.546 1 49.59 ? O2 EDO 706 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #