data_7KRF
#
_model_server_result.job_id            4lIBOjR3pKn7g0IgRQquPg 
_model_server_result.datetime_utc      '2024-11-22 14:03:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7krf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7KRF 
#
_exptl.entry_id    7KRF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.422 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-{3-[(E)-2-cyanoethenyl]-5-fluorophenoxy}-3-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenyl sulfurofluoridate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.59 
_cell.angle_gamma         90 
_cell.entry_id            7KRF 
_cell.length_a            226.002 
_cell.length_b            69.742 
_cell.length_c            105.414 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KRF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OH 
_struct_conn.ptnr1_label_comp_id            TYR 
_struct_conn.ptnr1_label_seq_id             183 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             TYR 
_struct_conn.ptnr1_auth_seq_id              181 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            S1A 
_struct_conn.ptnr2_label_comp_id            X2G 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             X2G 
_struct_conn.ptnr2_auth_seq_id              601 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.652 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H15 F2 N3 O7 S' 
_chem_comp.formula_weight    491.422 
_chem_comp.id                X2G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-{3-[(E)-2-cyanoethenyl]-5-fluorophenoxy}-3-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenyl sulfurofluoridate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1D S1A X2G doub 374 n n 
S1A O07 X2G sing 375 n n 
S1A O1C X2G doub 376 n n 
O07 C01 X2G sing 377 n n 
C01 C02 X2G doub 378 n y 
C01 C00 X2G sing 379 n y 
C02 C03 X2G sing 380 n y 
C00 C05 X2G doub 381 n y 
C03 C04 X2G doub 382 n y 
O0Q C0K X2G doub 383 n n 
C05 C04 X2G sing 384 n y 
C05 O0B X2G sing 385 n n 
C0D O0B X2G sing 386 n n 
C0D C0E X2G sing 387 n n 
C04 O0A X2G sing 388 n n 
C0K N0M X2G sing 389 n n 
C0K N0H X2G sing 390 n n 
C0E N0H X2G sing 391 n n 
N0M C0N X2G sing 392 n n 
N0H C0P X2G sing 393 n n 
O0A C0C X2G sing 394 n n 
C0V C0C X2G doub 395 n y 
C0V C0W X2G sing 396 n y 
C0N O0S X2G doub 397 n n 
C0N C0O X2G sing 398 n n 
C0C C0Z X2G sing 399 n y 
C0P C0O X2G doub 400 n n 
F11 C0W X2G sing 401 n n 
C0W C0X X2G doub 402 n y 
C0Z C0Y X2G doub 403 n y 
C0X C0Y X2G sing 404 n y 
C0Y C13 X2G sing 405 n n 
C13 C15 X2G doub 406 e n 
C15 C17 X2G sing 407 n n 
C17 N19 X2G trip 408 n n 
C13 H16 X2G sing 409 n n 
C15 H18 X2G sing 410 n n 
C00 H06 X2G sing 411 n n 
C02 H08 X2G sing 412 n n 
C03 H09 X2G sing 413 n n 
C0D H0G X2G sing 414 n n 
C0D H0F X2G sing 415 n n 
C0E H0J X2G sing 416 n n 
C0E H0I X2G sing 417 n n 
C0O H0T X2G sing 418 n n 
C0P H0U X2G sing 419 n n 
C0V H10 X2G sing 420 n n 
C0X H12 X2G sing 421 n n 
C0Z H14 X2G sing 422 n n 
N0M H0R X2G sing 423 n n 
S1A F X2G sing 424 n n 
#
_atom_sites.entry_id                     7KRF 
_atom_sites.fract_transf_matrix[1][1]    0.004425 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001234 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014339 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009849 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           X2G 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     601 
_pdbx_nonpoly_scheme.pdb_mon_id       X2G 
_pdbx_nonpoly_scheme.auth_mon_id      710 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 X2G . . . C 3 48.644 -28.641 27.685 1 102.23 ? C13 X2G 601 A 1 
HETATM 2 C C15 X2G . . . C 3 48.935 -29.834 28.162 1 97.11 ? C15 X2G 601 A 1 
HETATM 3 C C17 X2G . . . C 3 49.601 -29.934 29.534 1 106.52 ? C17 X2G 601 A 1 
HETATM 4 C C00 X2G . . . C 3 45.589 -29.497 19.969 1 121.33 ? C00 X2G 601 A 1 
HETATM 5 C C01 X2G . . . C 3 46.435 -28.741 19.169 1 120.72 ? C01 X2G 601 A 1 
HETATM 6 C C02 X2G . . . C 3 47.689 -28.417 19.65 1 109.03 ? C02 X2G 601 A 1 
HETATM 7 C C03 X2G . . . C 3 48.086 -28.836 20.904 1 91.65 ? C03 X2G 601 A 1 
HETATM 8 C C04 X2G . . . C 3 47.243 -29.593 21.696 1 101.21 ? C04 X2G 601 A 1 
HETATM 9 C C05 X2G . . . C 3 45.974 -29.929 21.238 1 94.38 ? C05 X2G 601 A 1 
HETATM 10 C C0C X2G . . . C 3 47.508 -29.121 24.054 1 90.62 ? C0C X2G 601 A 1 
HETATM 11 C C0D X2G . . . C 3 44.029 -31.335 21.426 1 101.14 ? C0D X2G 601 A 1 
HETATM 12 C C0E X2G . . . C 3 43.334 -32.237 22.442 1 92.62 ? C0E X2G 601 A 1 
HETATM 13 C C0K X2G . . . C 3 44.403 -34.503 22.228 1 90.68 ? C0K X2G 601 A 1 
HETATM 14 C C0N X2G . . . C 3 45.96 -35.298 23.952 1 102.46 ? C0N X2G 601 A 1 
HETATM 15 C C0O X2G . . . C 3 45.769 -33.994 24.721 1 98.51 ? C0O X2G 601 A 1 
HETATM 16 C C0P X2G . . . C 3 44.945 -33.041 24.24 1 95.24 ? C0P X2G 601 A 1 
HETATM 17 C C0V X2G . . . C 3 46.708 -27.994 23.901 1 112.97 ? C0V X2G 601 A 1 
HETATM 18 C C0W X2G . . . C 3 46.541 -27.104 24.949 1 109.99 ? C0W X2G 601 A 1 
HETATM 19 C C0X X2G . . . C 3 47.17 -27.333 26.155 1 101.85 ? C0X X2G 601 A 1 
HETATM 20 C C0Y X2G . . . C 3 47.97 -28.446 26.325 1 113.22 ? C0Y X2G 601 A 1 
HETATM 21 C C0Z X2G . . . C 3 48.143 -29.343 25.277 1 105.37 ? C0Z X2G 601 A 1 
HETATM 22 F F11 X2G . . . C 3 45.762 -26.012 24.794 1 101.45 ? F11 X2G 601 A 1 
HETATM 23 N N0H X2G . . . C 3 44.223 -33.261 22.961 1 88.92 ? N0H X2G 601 A 1 
HETATM 24 N N0M X2G . . . C 3 45.27 -35.507 22.732 1 109.04 ? N0M X2G 601 A 1 
HETATM 25 N N19 X2G . . . C 3 50.094 -30.008 30.553 1 118.74 ? N19 X2G 601 A 1 
HETATM 26 O O07 X2G . . . C 3 46.035 -28.314 17.895 1 121.62 ? O07 X2G 601 A 1 
HETATM 27 O O0A X2G . . . C 3 47.659 -30.001 22.973 1 103.95 ? O0A X2G 601 A 1 
HETATM 28 O O0B X2G . . . C 3 45.11 -30.69 22.033 1 93.26 ? O0B X2G 601 A 1 
HETATM 29 O O0Q X2G . . . C 3 43.827 -34.678 21.208 1 92.14 ? O0Q X2G 601 A 1 
HETATM 30 O O0S X2G . . . C 3 46.684 -36.136 24.374 1 125.08 ? O0S X2G 601 A 1 
HETATM 31 O O1C X2G . . . C 3 43.659 -27.655 18.197 1 145.73 ? O1C X2G 601 A 1 
HETATM 32 O O1D X2G . . . C 3 44.809 -27.106 16.093 1 143.9 ? O1D X2G 601 A 1 
HETATM 33 S S1A X2G . . . C 3 44.855 -27.21 17.529 1 173.03 ? S1A X2G 601 A 1 
HETATM 34 H H16 X2G . . . C 3 48.889 -27.768 28.276 1 122.68 ? H16 X2G 601 A 1 
HETATM 35 H H18 X2G . . . C 3 48.707 -30.726 27.592 1 116.53 ? H18 X2G 601 A 1 
HETATM 36 H H06 X2G . . . C 3 44.605 -29.759 19.598 1 145.59 ? H06 X2G 601 A 1 
HETATM 37 H H08 X2G . . . C 3 48.366 -27.832 19.039 1 130.83 ? H08 X2G 601 A 1 
HETATM 38 H H09 X2G . . . C 3 49.068 -28.568 21.272 1 109.98 ? H09 X2G 601 A 1 
HETATM 39 H H0G X2G . . . C 3 44.386 -31.936 20.596 1 121.37 ? H0G X2G 601 A 1 
HETATM 40 H H0F X2G . . . C 3 43.325 -30.595 21.06 1 121.37 ? H0F X2G 601 A 1 
HETATM 41 H H0J X2G . . . C 3 42.489 -32.719 21.962 1 111.14 ? H0J X2G 601 A 1 
HETATM 42 H H0I X2G . . . C 3 42.983 -31.628 23.268 1 111.14 ? H0I X2G 601 A 1 
HETATM 43 H H0T X2G . . . C 3 46.296 -33.833 25.653 1 118.22 ? H0T X2G 601 A 1 
HETATM 44 H H0U X2G . . . C 3 44.81 -32.116 24.786 1 114.29 ? H0U X2G 601 A 1 
HETATM 45 H H10 X2G . . . C 3 46.213 -27.812 22.955 1 135.56 ? H10 X2G 601 A 1 
HETATM 46 H H12 X2G . . . C 3 47.037 -26.635 26.972 1 122.22 ? H12 X2G 601 A 1 
HETATM 47 H H14 X2G . . . C 3 48.77 -30.216 25.409 1 126.45 ? H14 X2G 601 A 1 
HETATM 48 H H0R X2G . . . C 3 45.394 -36.362 22.227 1 130.85 ? H0R X2G 601 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#