data_7KRJ
#
_model_server_result.job_id            z0H8n2lGCDRbdrk2PDMyeg 
_model_server_result.datetime_utc      '2025-09-01 03:47:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7krj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":801}' 
#
_entry.id    7KRJ 
#
_exptl.entry_id    7KRJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KRJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KRJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 51 A ASN 51 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc2 E O1G ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? 
metalc ? metalc3 E O1B ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? 
metalc ? metalc4 E O2A ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? 
metalc ? metalc5 B OD1 ASN 51 B ASN 51 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc6 G O1G ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc7 G O1B ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? 
metalc ? metalc8 G O2A ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7KRJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 ATP A 1 801 735 ATP AZP . 
F 5 MG A 1 802 736 MG MG . 
G 4 ATP B 1 801 735 ATP AZP . 
H 5 MG B 1 802 736 MG MG . 
I 6 DEX D 1 801 801 DEX DEX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . G 4 100.068 119.904 139.622 1 26.48 ? PG ATP 801 B 1 
HETATM 2 O O1G ATP . . . G 4 100.738 118.991 140.601 1 44.52 ? O1G ATP 801 B 1 
HETATM 3 O O2G ATP . . . G 4 100.08 119.41 138.247 1 32.9 ? O2G ATP 801 B 1 
HETATM 4 O O3G ATP . . . G 4 100.548 121.307 139.718 1 41.61 ? O3G ATP 801 B 1 
HETATM 5 P PB ATP . . . G 4 97.757 119.232 141.23 1 43.46 ? PB ATP 801 B 1 
HETATM 6 O O1B ATP . . . G 4 98.741 118.57 142.137 1 45.9 ? O1B ATP 801 B 1 
HETATM 7 O O2B ATP . . . G 4 96.686 120.058 141.822 1 42.67 ? O2B ATP 801 B 1 
HETATM 8 O O3B ATP . . . G 4 98.501 120.037 140.028 1 41.83 ? O3B ATP 801 B 1 
HETATM 9 P PA ATP . . . G 4 96.721 116.67 140.435 1 43.09 ? PA ATP 801 B 1 
HETATM 10 O O1A ATP . . . G 4 96.043 116.227 139.181 1 44.22 ? O1A ATP 801 B 1 
HETATM 11 O O2A ATP . . . G 4 98 116.035 140.854 1 47.82 ? O2A ATP 801 B 1 
HETATM 12 O O3A ATP . . . G 4 96.922 118.236 140.316 1 41.92 ? O3A ATP 801 B 1 
HETATM 13 O O5' ATP . . . G 4 95.685 116.594 141.629 1 43.89 ? O5' ATP 801 B 1 
HETATM 14 C C5' ATP . . . G 4 94.323 117.003 141.477 1 44.29 ? C5' ATP 801 B 1 
HETATM 15 C C4' ATP . . . G 4 93.628 117.005 142.837 1 45.26 ? C4' ATP 801 B 1 
HETATM 16 O O4' ATP . . . G 4 93.302 115.684 143.239 1 47.8 ? O4' ATP 801 B 1 
HETATM 17 C C3' ATP . . . G 4 94.422 117.593 143.983 1 45.5 ? C3' ATP 801 B 1 
HETATM 18 O O3' ATP . . . G 4 94.301 119.018 143.995 1 50.2 ? O3' ATP 801 B 1 
HETATM 19 C C2' ATP . . . G 4 93.85 116.891 145.196 1 47.79 ? C2' ATP 801 B 1 
HETATM 20 O O2' ATP . . . G 4 92.721 117.579 145.756 1 53 ? O2' ATP 801 B 1 
HETATM 21 C C1' ATP . . . G 4 93.407 115.535 144.652 1 45.71 ? C1' ATP 801 B 1 
HETATM 22 N N9 ATP . . . G 4 94.328 114.397 144.989 1 46.42 ? N9 ATP 801 B 1 
HETATM 23 C C8 ATP . . . G 4 95.189 113.8 144.144 1 47.67 ? C8 ATP 801 B 1 
HETATM 24 N N7 ATP . . . G 4 95.862 112.8 144.734 1 49.25 ? N7 ATP 801 B 1 
HETATM 25 C C5 ATP . . . G 4 95.459 112.74 145.991 1 47.99 ? C5 ATP 801 B 1 
HETATM 26 C C6 ATP . . . G 4 95.785 111.894 147.19 1 51.22 ? C6 ATP 801 B 1 
HETATM 27 N N6 ATP . . . G 4 96.716 110.925 147.062 1 55.28 ? N6 ATP 801 B 1 
HETATM 28 N N1 ATP . . . G 4 95.11 112.138 148.376 1 53.57 ? N1 ATP 801 B 1 
HETATM 29 C C2 ATP . . . G 4 94.158 113.139 148.48 1 52.29 ? C2 ATP 801 B 1 
HETATM 30 N N3 ATP . . . G 4 93.826 113.948 147.415 1 50.39 ? N3 ATP 801 B 1 
HETATM 31 C C4 ATP . . . G 4 94.43 113.797 146.169 1 47.09 ? C4 ATP 801 B 1 
HETATM 32 H "H5'1" ATP . . . G 4 93.797 116.332 140.791 1 53.15 ? "H5'1" ATP 801 B 1 
HETATM 33 H "H5'2" ATP . . . G 4 94.269 118.018 141.058 1 53.15 ? "H5'2" ATP 801 B 1 
HETATM 34 H H4' ATP . . . G 4 92.707 117.59 142.722 1 54.31 ? H4' ATP 801 B 1 
HETATM 35 H H3' ATP . . . G 4 95.485 117.326 143.901 1 54.6 ? H3' ATP 801 B 1 
HETATM 36 H HO3' ATP . . . G 4 95.153 119.388 143.705 1 60.24 ? HO3' ATP 801 B 1 
HETATM 37 H H2' ATP . . . G 4 94.636 116.774 145.954 1 57.34 ? H2' ATP 801 B 1 
HETATM 38 H HO2' ATP . . . G 4 92.328 117.044 146.456 1 63.6 ? HO2' ATP 801 B 1 
HETATM 39 H H1' ATP . . . G 4 92.405 115.311 145.048 1 54.85 ? H1' ATP 801 B 1 
HETATM 40 H H8 ATP . . . G 4 95.322 114.08 143.106 1 57.21 ? H8 ATP 801 B 1 
HETATM 41 H HN61 ATP . . . G 4 96.964 110.618 146.136 1 66.33 ? HN61 ATP 801 B 1 
HETATM 42 H HN62 ATP . . . G 4 97.305 110.627 147.847 1 66.33 ? HN62 ATP 801 B 1 
HETATM 43 H H2 ATP . . . G 4 93.657 113.291 149.427 1 62.74 ? H2 ATP 801 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#