data_7KRJ # _model_server_result.job_id TM0V-cnbKPPKuHE6yoYXjA _model_server_result.datetime_utc '2025-08-31 11:41:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7krj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":801}' # _entry.id 7KRJ # _exptl.entry_id 7KRJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 392.461 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEXAMETHASONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KRJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 51 A ASN 51 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc2 E O1G ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc3 E O1B ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? metalc ? metalc4 E O2A ATP . A ATP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc5 B OD1 ASN 51 B ASN 51 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc6 G O1G ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc7 G O1B ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? metalc ? metalc8 G O2A ATP . B ATP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? # _chem_comp.formula 'C22 H29 F O5' _chem_comp.formula_weight 392.461 _chem_comp.id DEX _chem_comp.mon_nstd_flag . _chem_comp.name DEXAMETHASONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9A-FLUORO-16BETA-METHYLPREDNISOLONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEX doub 132 n n C1 C10 DEX sing 133 n n C1 H1 DEX sing 134 n n C2 C3 DEX sing 135 n n C2 H2 DEX sing 136 n n C3 C4 DEX sing 137 n n C3 O1 DEX doub 138 n n C4 C5 DEX doub 139 n n C4 H4 DEX sing 140 n n C5 C6 DEX sing 141 n n C5 C10 DEX sing 142 n n C6 C7 DEX sing 143 n n C6 H61 DEX sing 144 n n C6 H62 DEX sing 145 n n C7 C8 DEX sing 146 n n C7 H71 DEX sing 147 n n C7 H72 DEX sing 148 n n C8 C9 DEX sing 149 n n C8 C14 DEX sing 150 n n C8 H8 DEX sing 151 n n C9 C10 DEX sing 152 n n C9 C11 DEX sing 153 n n C9 F1 DEX sing 154 n n C10 C19 DEX sing 155 n n C11 C12 DEX sing 156 n n C11 O2 DEX sing 157 n n C11 H11 DEX sing 158 n n C12 C13 DEX sing 159 n n C12 H211 DEX sing 160 n n C12 H221 DEX sing 161 n n C13 C14 DEX sing 162 n n C13 C17 DEX sing 163 n n C13 C18 DEX sing 164 n n C14 C15 DEX sing 165 n n C14 H14 DEX sing 166 n n C15 C16 DEX sing 167 n n C15 H511 DEX sing 168 n n C15 H521 DEX sing 169 n n C16 C17 DEX sing 170 n n C16 C22 DEX sing 171 n n C16 H16 DEX sing 172 n n C17 C20 DEX sing 173 n n C17 O3 DEX sing 174 n n C18 H811 DEX sing 175 n n C18 H821 DEX sing 176 n n C18 H831 DEX sing 177 n n C19 H911 DEX sing 178 n n C19 H921 DEX sing 179 n n C19 H931 DEX sing 180 n n C20 C21 DEX sing 181 n n C20 O4 DEX doub 182 n n C21 O5 DEX sing 183 n n C21 H112 DEX sing 184 n n C21 H122 DEX sing 185 n n C22 H212 DEX sing 186 n n C22 H222 DEX sing 187 n n C22 H232 DEX sing 188 n n O2 HO2 DEX sing 189 n n O3 H3 DEX sing 190 n n O5 H5 DEX sing 191 n n # _atom_sites.entry_id 7KRJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ATP A 1 801 735 ATP AZP . F 5 MG A 1 802 736 MG MG . G 4 ATP B 1 801 735 ATP AZP . H 5 MG B 1 802 736 MG MG . I 6 DEX D 1 801 801 DEX DEX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEX . . . I 6 150.753 162.973 107.515 1 83.24 ? C1 DEX 801 D 1 HETATM 2 C C2 DEX . . . I 6 151.368 162.508 108.624 1 88.66 ? C2 DEX 801 D 1 HETATM 3 C C3 DEX . . . I 6 150.552 162.416 109.917 1 86.27 ? C3 DEX 801 D 1 HETATM 4 C C4 DEX . . . I 6 149.088 162.855 109.921 1 79.1 ? C4 DEX 801 D 1 HETATM 5 C C5 DEX . . . I 6 148.529 163.313 108.777 1 76.32 ? C5 DEX 801 D 1 HETATM 6 C C6 DEX . . . I 6 147.084 163.753 108.853 1 72.87 ? C6 DEX 801 D 1 HETATM 7 C C7 DEX . . . I 6 146.88 165.152 108.249 1 76.19 ? C7 DEX 801 D 1 HETATM 8 C C8 DEX . . . I 6 147.677 165.47 106.967 1 73.81 ? C8 DEX 801 D 1 HETATM 9 C C9 DEX . . . I 6 149.145 164.902 106.884 1 79.67 ? C9 DEX 801 D 1 HETATM 10 C C10 DEX . . . I 6 149.281 163.429 107.42 1 80.88 ? C10 DEX 801 D 1 HETATM 11 C C11 DEX . . . I 6 149.904 165.275 105.583 1 82.85 ? C11 DEX 801 D 1 HETATM 12 C C12 DEX . . . I 6 149.584 166.635 104.924 1 86.38 ? C12 DEX 801 D 1 HETATM 13 C C13 DEX . . . I 6 148.086 167.048 104.95 1 83.66 ? C13 DEX 801 D 1 HETATM 14 C C14 DEX . . . I 6 147.515 166.902 106.395 1 81.39 ? C14 DEX 801 D 1 HETATM 15 C C15 DEX . . . I 6 146.182 167.651 106.378 1 82.03 ? C15 DEX 801 D 1 HETATM 16 C C16 DEX . . . I 6 146.42 168.799 105.402 1 83.86 ? C16 DEX 801 D 1 HETATM 17 C C17 DEX . . . I 6 147.809 168.567 104.766 1 89.87 ? C17 DEX 801 D 1 HETATM 18 C C18 DEX . . . I 6 147.362 166.181 103.887 1 87.92 ? C18 DEX 801 D 1 HETATM 19 C C19 DEX . . . I 6 148.664 162.366 106.512 1 85.78 ? C19 DEX 801 D 1 HETATM 20 C C20 DEX . . . I 6 147.943 169.114 103.322 1 99.58 ? C20 DEX 801 D 1 HETATM 21 C C21 DEX . . . I 6 149.305 169.336 102.649 1 119.66 ? C21 DEX 801 D 1 HETATM 22 C C22 DEX . . . I 6 146.123 170.14 106.071 1 104.28 ? C22 DEX 801 D 1 HETATM 23 F F1 DEX . . . I 6 149.853 165.682 107.769 1 81.48 ? F1 DEX 801 D 1 HETATM 24 O O1 DEX . . . I 6 151.069 161.991 110.944 1 81.85 ? O1 DEX 801 D 1 HETATM 25 O O2 DEX . . . I 6 149.687 164.296 104.586 1 90.15 ? O2 DEX 801 D 1 HETATM 26 O O3 DEX . . . I 6 148.739 169.301 105.574 1 92.62 ? O3 DEX 801 D 1 HETATM 27 O O4 DEX . . . I 6 146.928 169.344 102.656 1 104.44 ? O4 DEX 801 D 1 HETATM 28 O O5 DEX . . . I 6 149.243 169.436 101.22 1 109.93 ? O5 DEX 801 D 1 HETATM 29 H H14 DEX . . . I 6 148.137 167.486 107.124 1 97.67 ? H14 DEX 801 D 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 463 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #