data_7KRX # _model_server_result.job_id D4jCr5RrGGlMCJOvNQ2lBQ _model_server_result.datetime_utc '2024-10-24 18:20:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7krx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7KRX # _exptl.entry_id 7KRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.386 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-amino-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KRX _cell.length_a 114.333 _cell.length_b 114.333 _cell.length_c 219.573 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 20 A HIS 17 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc2 A OD1 ASP 65 A ASP 62 1_555 F ZN ZN . A ZN 505 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? metalc ? metalc3 A OE2 GLU 70 A GLU 67 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc4 A ND1 HIS 76 A HIS 73 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc5 A ND1 HIS 92 A HIS 89 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc6 A OD2 ASP 111 A ASP 108 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 A SG CYS 192 A CYS 189 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc8 A SG CYS 195 A CYS 192 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc9 A SG CYS 227 A CYS 224 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc10 A SG CYS 229 A CYS 226 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'C20 H20 N2 O' _chem_comp.formula_weight 304.386 _chem_comp.id Y41 _chem_comp.mon_nstd_flag . _chem_comp.name 3-amino-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C18 Y41 doub 382 n y C22 C20 Y41 sing 383 n y C18 C11 Y41 sing 384 n y C20 C14 Y41 doub 385 n y C11 C12 Y41 doub 386 n y C11 C8 Y41 sing 387 n y C14 C8 Y41 sing 388 n y C12 C9 Y41 sing 389 n y C8 C5 Y41 doub 390 n y O7 C1 Y41 doub 391 n n C23 C13 Y41 sing 392 n n C9 C4 Y41 doub 393 n y C1 C3 Y41 sing 394 n n C1 N2 Y41 sing 395 n n C13 C3 Y41 doub 396 n y C13 C19 Y41 sing 397 n y N01 C19 Y41 sing 398 n n C5 C4 Y41 sing 399 n y C5 C6 Y41 sing 400 n n C3 C10 Y41 sing 401 n y C19 C21 Y41 doub 402 n y C10 C17 Y41 doub 403 n y C21 C17 Y41 sing 404 n y C6 N2 Y41 sing 405 n n C6 C01 Y41 sing 406 n n C10 H1 Y41 sing 407 n n C17 H2 Y41 sing 408 n n C21 H3 Y41 sing 409 n n N01 H4 Y41 sing 410 n n N01 H5 Y41 sing 411 n n C23 H6 Y41 sing 412 n n C23 H7 Y41 sing 413 n n C23 H8 Y41 sing 414 n n N2 H9 Y41 sing 415 n n C6 H10 Y41 sing 416 n n C01 H11 Y41 sing 417 n n C01 H12 Y41 sing 418 n n C01 H13 Y41 sing 419 n n C14 H14 Y41 sing 420 n n C20 H15 Y41 sing 421 n n C22 H16 Y41 sing 422 n n C18 H17 Y41 sing 423 n n C12 H18 Y41 sing 424 n n C9 H19 Y41 sing 425 n n C4 H20 Y41 sing 426 n n # _atom_sites.entry_id 7KRX _atom_sites.fract_transf_matrix[1][1] 0.008746 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y41 A 1 501 501 Y41 Y41 . C 3 ZN A 1 502 502 ZN ZN . D 3 ZN A 1 503 503 ZN ZN . E 3 ZN A 1 504 504 ZN ZN . F 3 ZN A 1 505 505 ZN ZN . G 4 CL A 1 506 508 CL CL . H 4 CL A 1 507 509 CL CL . I 5 ACT A 1 508 511 ACT ACT . J 5 ACT A 1 509 512 ACT ACT . K 6 UNX A 1 510 521 UNX UNX . L 6 UNX A 1 511 522 UNX UNX . M 6 UNX A 1 512 523 UNX UNX . N 6 UNX A 1 513 524 UNX UNX . O 6 UNX A 1 514 525 UNX UNX . P 7 HOH A 1 601 6 HOH HOH . P 7 HOH A 2 602 3 HOH HOH . P 7 HOH A 3 603 1 HOH HOH . P 7 HOH A 4 604 7 HOH HOH . P 7 HOH A 5 605 2 HOH HOH . P 7 HOH A 6 606 8 HOH HOH . P 7 HOH A 7 607 4 HOH HOH . P 7 HOH A 8 608 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7 Y41 . . . B 2 49.627 30.999 -0.804 1 93.55 ? O7 Y41 501 A 1 HETATM 2 C C1 Y41 . . . B 2 49.973 31.571 0.22 1 93.62 ? C1 Y41 501 A 1 HETATM 3 C C3 Y41 . . . B 2 49.524 32.959 0.44 1 92.74 ? C3 Y41 501 A 1 HETATM 4 C C10 Y41 . . . B 2 48.235 33.202 0.908 1 89.65 ? C10 Y41 501 A 1 HETATM 5 C C17 Y41 . . . B 2 47.847 34.515 1.105 1 86.52 ? C17 Y41 501 A 1 HETATM 6 C C21 Y41 . . . B 2 48.741 35.538 0.813 1 84.75 ? C21 Y41 501 A 1 HETATM 7 C C19 Y41 . . . B 2 50.032 35.27 0.34 1 87.07 ? C19 Y41 501 A 1 HETATM 8 N N01 Y41 . . . B 2 50.89 36.278 0.069 1 84.07 ? N01 Y41 501 A 1 HETATM 9 C C13 Y41 . . . B 2 50.424 33.969 0.184 1 90.1 ? C13 Y41 501 A 1 HETATM 10 C C23 Y41 . . . B 2 51.79 33.655 -0.317 1 91.29 ? C23 Y41 501 A 1 HETATM 11 N N2 Y41 . . . B 2 50.719 31.062 1.189 1 95.99 ? N2 Y41 501 A 1 HETATM 12 C C6 Y41 . . . B 2 51.059 29.674 1.192 1 91.76 ? C6 Y41 501 A 1 HETATM 13 C C01 Y41 . . . B 2 51.148 29.11 2.603 1 85.17 ? C01 Y41 501 A 1 HETATM 14 C C5 Y41 . . . B 2 52.303 29.518 0.402 1 91.45 ? C5 Y41 501 A 1 HETATM 15 C C8 Y41 . . . B 2 52.271 28.767 -0.888 1 89.57 ? C8 Y41 501 A 1 HETATM 16 C C14 Y41 . . . B 2 51.117 28.191 -1.427 1 87.06 ? C14 Y41 501 A 1 HETATM 17 C C20 Y41 . . . B 2 51.18 27.504 -2.641 1 92.54 ? C20 Y41 501 A 1 HETATM 18 C C22 Y41 . . . B 2 52.386 27.383 -3.34 1 92.85 ? C22 Y41 501 A 1 HETATM 19 C C18 Y41 . . . B 2 53.566 27.953 -2.847 1 92.09 ? C18 Y41 501 A 1 HETATM 20 C C11 Y41 . . . B 2 53.561 28.63 -1.625 1 94.77 ? C11 Y41 501 A 1 HETATM 21 C C12 Y41 . . . B 2 54.726 29.203 -1.087 1 97.1 ? C12 Y41 501 A 1 HETATM 22 C C9 Y41 . . . B 2 54.7 29.911 0.124 1 97.78 ? C9 Y41 501 A 1 HETATM 23 C C4 Y41 . . . B 2 53.508 30.069 0.858 1 96.44 ? C4 Y41 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #