data_7KS8
#
_model_server_result.job_id            bEnaEqDVsFwMxgKd08ImgA 
_model_server_result.datetime_utc      '2024-10-11 02:18:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ks8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    7KS8 
#
_exptl.entry_id    7KS8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              948.151 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(tert-butyl {1-[(3-oxo-3-{[(pyridin-3-yl-kappaN)methyl]amino}propyl)sulfanyl]-3-phenylpropan-2-yl}carbamate)(6,6'-dimethyl-2,2'-bipyridine-kappa~2~N~1~,N~1'~)(1~2~,2~2~:2~6~,3~2~-terpyridine-kappa~3~N~1^{1~},N~2^{1~},N~3^{1~})ruthenium" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KS8 
_cell.length_a            76.759 
_cell.length_b            101.16 
_cell.length_c            127.44 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KS8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             422 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              442 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              601 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.392 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C50 H54 N8 O3 Ru S' 
_chem_comp.formula_weight    948.151 
_chem_comp.id                X8S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(tert-butyl {1-[(3-oxo-3-{[(pyridin-3-yl-kappaN)methyl]amino}propyl)sulfanyl]-3-phenylpropan-2-yl}carbamate)(6,6'-dimethyl-2,2'-bipyridine-kappa~2~N~1~,N~1'~)(1~2~,2~2~:2~6~,3~2~-terpyridine-kappa~3~N~1^{1~},N~2^{1~},N~3^{1~})ruthenium" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C35 C37 X8S doub 469 n y 
C35 C38 X8S sing 470 n y 
C37 C36 X8S sing 471 n y 
C50 C48 X8S sing 472 n n 
C38 N06 X8S doub 473 n y 
C46 C48 X8S doub 474 n y 
C46 C49 X8S sing 475 n y 
C48 N08 X8S sing 476 n y 
C36 C29 X8S doub 477 n y 
C02 C01 X8S doub 478 n y 
C02 C03 X8S sing 479 n y 
C49 C47 X8S doub 480 n y 
N06 C29 X8S sing 481 n y 
N06 RU01 X8S sing 482 n n 
C01 N01 X8S sing 483 n y 
C03 C04 X8S doub 484 n y 
N08 C44 X8S doub 485 n y 
N08 RU01 X8S sing 486 n n 
C29 C27 X8S sing 487 n n 
N01 C23 X8S doub 488 n y 
N01 RU01 X8S sing 489 n n 
C04 C23 X8S sing 490 n y 
C04 C05 X8S sing 491 n n 
C47 C44 X8S sing 492 n y 
C44 C40 X8S sing 493 n n 
C20 C19 X8S sing 494 n n 
RU01 N04 X8S sing 495 n n 
RU01 N07 X8S sing 496 n n 
RU01 N05 X8S sing 497 n n 
C05 N02 X8S sing 498 n n 
C27 C26 X8S doub 499 n y 
C27 N04 X8S sing 500 n y 
C22 C19 X8S sing 501 n n 
C26 C24 X8S sing 502 n y 
O01 C06 X8S doub 503 n n 
N04 C28 X8S doub 504 n y 
C40 N07 X8S doub 505 n y 
C40 C43 X8S sing 506 n y 
C19 C21 X8S sing 507 n n 
C19 O03 X8S sing 508 n n 
N07 C41 X8S sing 509 n y 
N02 C06 X8S sing 510 n n 
C43 C39 X8S doub 511 n y 
C06 C07 X8S sing 512 n n 
N05 C33 X8S doub 513 n y 
N05 C30 X8S sing 514 n y 
C24 C25 X8S doub 515 n y 
C28 C30 X8S sing 516 n n 
C28 C25 X8S sing 517 n y 
C41 C45 X8S sing 518 n n 
C41 C42 X8S doub 519 n y 
O03 C18 X8S sing 520 n n 
C33 C31 X8S sing 521 n y 
C30 C32 X8S doub 522 n y 
C39 C42 X8S sing 523 n y 
C07 C08 X8S sing 524 n n 
C08 S01 X8S sing 525 n n 
C18 N03 X8S sing 526 n n 
C18 O02 X8S doub 527 n n 
S01 C09 X8S sing 528 n n 
C31 C34 X8S doub 529 n y 
C32 C34 X8S sing 530 n y 
N03 C10 X8S sing 531 n n 
C10 C09 X8S sing 532 n n 
C10 C11 X8S sing 533 n n 
C17 C16 X8S doub 534 n y 
C17 C12 X8S sing 535 n y 
C16 C15 X8S sing 536 n y 
C11 C12 X8S sing 537 n n 
C12 C13 X8S doub 538 n y 
C15 C14 X8S doub 539 n y 
C13 C14 X8S sing 540 n y 
C10 H1 X8S sing 541 n n 
C11 H2 X8S sing 542 n n 
C11 H3 X8S sing 543 n n 
C13 H4 X8S sing 544 n n 
C14 H5 X8S sing 545 n n 
C15 H6 X8S sing 546 n n 
C16 H7 X8S sing 547 n n 
C17 H8 X8S sing 548 n n 
C20 H9 X8S sing 549 n n 
C20 H10 X8S sing 550 n n 
C20 H11 X8S sing 551 n n 
C21 H12 X8S sing 552 n n 
C21 H13 X8S sing 553 n n 
C21 H14 X8S sing 554 n n 
C22 H15 X8S sing 555 n n 
C22 H16 X8S sing 556 n n 
C22 H17 X8S sing 557 n n 
C23 H18 X8S sing 558 n n 
C24 H19 X8S sing 559 n n 
C25 H20 X8S sing 560 n n 
C26 H21 X8S sing 561 n n 
C01 H22 X8S sing 562 n n 
C02 H23 X8S sing 563 n n 
C03 H24 X8S sing 564 n n 
C05 H25 X8S sing 565 n n 
C05 H26 X8S sing 566 n n 
C07 H27 X8S sing 567 n n 
C07 H28 X8S sing 568 n n 
C08 H29 X8S sing 569 n n 
C08 H30 X8S sing 570 n n 
C09 H31 X8S sing 571 n n 
C09 H32 X8S sing 572 n n 
C31 H33 X8S sing 573 n n 
C32 H34 X8S sing 574 n n 
C33 H35 X8S sing 575 n n 
C34 H36 X8S sing 576 n n 
C35 H37 X8S sing 577 n n 
C36 H38 X8S sing 578 n n 
C37 H39 X8S sing 579 n n 
C38 H40 X8S sing 580 n n 
C39 H41 X8S sing 581 n n 
C42 H42 X8S sing 582 n n 
C43 H43 X8S sing 583 n n 
C45 H44 X8S sing 584 n n 
C45 H45 X8S sing 585 n n 
C45 H46 X8S sing 586 n n 
C46 H47 X8S sing 587 n n 
C47 H48 X8S sing 588 n n 
C49 H49 X8S sing 589 n n 
C50 H50 X8S sing 590 n n 
C50 H51 X8S sing 591 n n 
C50 H52 X8S sing 592 n n 
N02 H53 X8S sing 593 n n 
N03 H54 X8S sing 594 n n 
#
_atom_sites.entry_id                     7KS8 
_atom_sites.fract_transf_matrix[1][1]    0.013028 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007847 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 601 HEM HEM . 
C 3 GOL A 1 602 800 GOL GOL . 
D 4 X8S A 1 603 700 X8S RUT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 X8S . . . D 4 -18.834 -20.11 -7.805 1 105.25 ? C10 X8S 603 A 1 
HETATM 2 C C11 X8S . . . D 4 -19.732 -20.468 -6.592 1 93.16 ? C11 X8S 603 A 1 
HETATM 3 C C12 X8S . . . D 4 -21.084 -19.724 -6.491 1 94.3 ? C12 X8S 603 A 1 
HETATM 4 C C13 X8S . . . D 4 -21.178 -18.519 -5.781 1 103.14 ? C13 X8S 603 A 1 
HETATM 5 C C14 X8S . . . D 4 -22.402 -17.845 -5.683 1 95.46 ? C14 X8S 603 A 1 
HETATM 6 C C15 X8S . . . D 4 -23.541 -18.383 -6.293 1 93.52 ? C15 X8S 603 A 1 
HETATM 7 C C16 X8S . . . D 4 -23.457 -19.59 -6.998 1 93.99 ? C16 X8S 603 A 1 
HETATM 8 C C17 X8S . . . D 4 -22.23 -20.261 -7.095 1 101.82 ? C17 X8S 603 A 1 
HETATM 9 C C18 X8S . . . D 4 -19.706 -21.763 -9.544 1 114.89 ? C18 X8S 603 A 1 
HETATM 10 C C19 X8S . . . D 4 -20.247 -21.649 -11.884 1 113.69 ? C19 X8S 603 A 1 
HETATM 11 C C20 X8S . . . D 4 -20.222 -22.591 -13.071 1 99.61 ? C20 X8S 603 A 1 
HETATM 12 C C21 X8S . . . D 4 -21.675 -21.52 -11.37 1 108.92 ? C21 X8S 603 A 1 
HETATM 13 C C22 X8S . . . D 4 -19.73 -20.299 -12.336 1 121.44 ? C22 X8S 603 A 1 
HETATM 14 C C23 X8S . . . D 4 -24.126 -16.356 -13.101 1 123.28 ? C23 X8S 603 A 1 
HETATM 15 C C24 X8S . . . D 4 -29.918 -15.973 -11.001 1 168.09 ? C24 X8S 603 A 1 
HETATM 16 C C25 X8S . . . D 4 -28.695 -15.892 -10.335 1 164.23 ? C25 X8S 603 A 1 
HETATM 17 C C26 X8S . . . D 4 -30.013 -15.439 -12.283 1 161.66 ? C26 X8S 603 A 1 
HETATM 18 C C27 X8S . . . D 4 -28.889 -14.842 -12.861 1 158.43 ? C27 X8S 603 A 1 
HETATM 19 C C01 X8S . . . D 4 -26.294 -16.881 -14.051 1 138.41 ? C01 X8S 603 A 1 
HETATM 20 C C02 X8S . . . D 4 -25.836 -18.194 -14.287 1 111.72 ? C02 X8S 603 A 1 
HETATM 21 C C03 X8S . . . D 4 -24.527 -18.578 -13.945 1 97.79 ? C03 X8S 603 A 1 
HETATM 22 C C04 X8S . . . D 4 -23.657 -17.653 -13.358 1 99.47 ? C04 X8S 603 A 1 
HETATM 23 C C05 X8S . . . D 4 -22.218 -18.087 -12.98 1 94.12 ? C05 X8S 603 A 1 
HETATM 24 C C06 X8S . . . D 4 -20.498 -17.06 -11.381 1 116.29 ? C06 X8S 603 A 1 
HETATM 25 C C07 X8S . . . D 4 -20.163 -16.513 -9.975 1 104.63 ? C07 X8S 603 A 1 
HETATM 26 C C08 X8S . . . D 4 -18.664 -16.352 -9.636 1 111.44 ? C08 X8S 603 A 1 
HETATM 27 C C09 X8S . . . D 4 -18.443 -18.619 -7.792 1 111.12 ? C09 X8S 603 A 1 
HETATM 28 C C28 X8S . . . D 4 -27.599 -15.289 -10.968 1 153.91 ? C28 X8S 603 A 1 
HETATM 29 C C29 X8S . . . D 4 -28.947 -14.453 -13.792 1 160.01 ? C29 X8S 603 A 1 
HETATM 30 C C30 X8S . . . D 4 -26.517 -15.131 -10.568 1 148.17 ? C30 X8S 603 A 1 
HETATM 31 C C31 X8S . . . D 4 -24.067 -14.944 -9.293 1 137.17 ? C31 X8S 603 A 1 
HETATM 32 C C32 X8S . . . D 4 -26.362 -15.651 -9.274 1 143.12 ? C32 X8S 603 A 1 
HETATM 33 C C33 X8S . . . D 4 -24.269 -14.433 -10.582 1 142.69 ? C33 X8S 603 A 1 
HETATM 34 C C34 X8S . . . D 4 -25.129 -15.56 -8.625 1 138.31 ? C34 X8S 603 A 1 
HETATM 35 C C35 X8S . . . D 4 -28.58 -13.256 -16.258 1 155.54 ? C35 X8S 603 A 1 
HETATM 36 C C36 X8S . . . D 4 -30.022 -14.386 -14.685 1 163.5 ? C36 X8S 603 A 1 
HETATM 37 C C37 X8S . . . D 4 -29.833 -13.781 -15.93 1 162.23 ? C37 X8S 603 A 1 
HETATM 38 C C38 X8S . . . D 4 -27.553 -13.357 -15.312 1 159.79 ? C38 X8S 603 A 1 
HETATM 39 C C39 X8S . . . D 4 -24.83 -9.865 -10.513 1 142.17 ? C39 X8S 603 A 1 
HETATM 40 C C40 X8S . . . D 4 -24.621 -11.685 -12.106 1 156.11 ? C40 X8S 603 A 1 
HETATM 41 C C41 X8S . . . D 4 -26.635 -11.58 -10.903 1 155.12 ? C41 X8S 603 A 1 
HETATM 42 C C42 X8S . . . D 4 -26.182 -10.43 -10.243 1 146.35 ? C42 X8S 603 A 1 
HETATM 43 C C43 X8S . . . D 4 -24.086 -10.549 -11.476 1 143.5 ? C43 X8S 603 A 1 
HETATM 44 C C44 X8S . . . D 4 -23.689 -12.317 -13.126 1 161.01 ? C44 X8S 603 A 1 
HETATM 45 C C45 X8S . . . D 4 -28.044 -12.084 -10.54 1 152.3 ? C45 X8S 603 A 1 
HETATM 46 C C46 X8S . . . D 4 -21.827 -13.232 -14.892 1 143.78 ? C46 X8S 603 A 1 
HETATM 47 C C47 X8S . . . D 4 -22.474 -11.645 -13.252 1 162.06 ? C47 X8S 603 A 1 
HETATM 48 C C48 X8S . . . D 4 -23.056 -13.886 -14.748 1 139.89 ? C48 X8S 603 A 1 
HETATM 49 C C49 X8S . . . D 4 -21.516 -12.104 -14.148 1 155.1 ? C49 X8S 603 A 1 
HETATM 50 C C50 X8S . . . D 4 -23.098 -15.096 -15.714 1 131.22 ? C50 X8S 603 A 1 
HETATM 51 N N01 X8S . . . D 4 -25.433 -15.964 -13.466 1 141.34 ? N01 X8S 603 A 1 
HETATM 52 N N02 X8S . . . D 4 -21.85 -17.593 -11.645 1 113.64 ? N02 X8S 603 A 1 
HETATM 53 N N03 X8S . . . D 4 -19.512 -20.385 -9.08 1 110.59 ? N03 X8S 603 A 1 
HETATM 54 N N04 X8S . . . D 4 -27.689 -14.764 -12.221 1 155.78 ? N04 X8S 603 A 1 
HETATM 55 N N05 X8S . . . D 4 -25.479 -14.529 -11.21 1 145.59 ? N05 X8S 603 A 1 
HETATM 56 N N06 X8S . . . D 4 -27.727 -13.941 -14.105 1 161.43 ? N06 X8S 603 A 1 
HETATM 57 N N07 X8S . . . D 4 -25.84 -12.196 -11.841 1 159.29 ? N07 X8S 603 A 1 
HETATM 58 N N08 X8S . . . D 4 -24.022 -13.421 -13.834 1 151.86 ? N08 X8S 603 A 1 
HETATM 59 O O01 X8S . . . D 4 -19.665 -17.03 -12.253 1 125.2 ? O01 X8S 603 A 1 
HETATM 60 O O02 X8S . . . D 4 -20.169 -22.587 -8.8 1 107.18 ? O02 X8S 603 A 1 
HETATM 61 O O03 X8S . . . D 4 -19.363 -22.145 -10.876 1 119.19 ? O03 X8S 603 A 1 
HETATM 62 S S01 X8S . . . D 4 -18.029 -18.035 -9.459 1 111.4 ? S01 X8S 603 A 1 
HETATM 63 RU RU01 X8S . . . D 4 -26.062 -13.898 -13.062 1 149.29 ? RU01 X8S 603 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           63 
#