data_7KSA # _model_server_result.job_id cyr5opLcUO2ZOhxNMD8Qtg _model_server_result.datetime_utc '2024-11-14 19:34:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ksa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7KSA # _exptl.entry_id 7KSA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1052.3 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(tert-butyl {1-[(1-oxo-3-phenyl-1-{[3-(pyridin-3-yl-kappaN)prop-1-en-1-yl]amino}propan-2-yl)sulfanyl]-3-phenylpropan-2-yl}carbamate)(6,6'-dimethyl-2,2'-bipyridine-kappa~2~N~1~,N~1'~)(1~2~,2~2~:2~6~,3~2~-terpyridine-kappa~3~N~1^{1~},N~2^{1~},N~3^{1~})ruthenium" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KSA _cell.length_a 74.57 _cell.length_b 95 _cell.length_c 121.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KSA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C O07 X8P . A X8P 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C58 H62 N8 O3 Ru S' _chem_comp.formula_weight 1052.3 _chem_comp.id X8P _chem_comp.mon_nstd_flag . _chem_comp.name "(tert-butyl {1-[(1-oxo-3-phenyl-1-{[3-(pyridin-3-yl-kappaN)prop-1-en-1-yl]amino}propan-2-yl)sulfanyl]-3-phenylpropan-2-yl}carbamate)(6,6'-dimethyl-2,2'-bipyridine-kappa~2~N~1~,N~1'~)(1~2~,2~2~:2~6~,3~2~-terpyridine-kappa~3~N~1^{1~},N~2^{1~},N~3^{1~})ruthenium" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C31 X8P doub 458 n y C30 C29 X8P sing 459 n y C31 C26 X8P sing 460 n y C29 N28 X8P doub 461 n y C26 C25 X8P sing 462 n n C26 C27 X8P doub 463 n y C25 C24 X8P sing 464 n n C65 C63 X8P sing 465 n n N28 C27 X8P sing 466 n y N28 RU71 X8P sing 467 n n C49 C47 X8P doub 468 n y C49 C46 X8P sing 469 n y C47 C45 X8P sing 470 n y C40 C39 X8P doub 471 n y C40 C43 X8P sing 472 n y C46 C48 X8P doub 473 n y C24 C23 X8P sing 474 n n C39 C41 X8P sing 475 n y C45 C43 X8P sing 476 n n C45 N67 X8P doub 477 n y C63 C61 X8P doub 478 n y C63 N70 X8P sing 479 n y C43 N66 X8P doub 480 n y C23 N22 X8P sing 481 n n C48 N67 X8P sing 482 n y N67 RU71 X8P sing 483 n n C41 C42 X8P doub 484 n y C61 C64 X8P sing 485 n y N66 C42 X8P sing 486 n y N66 RU71 X8P sing 487 n n C42 C44 X8P sing 488 n n C03 C02 X8P sing 489 n n N70 RU71 X8P sing 490 n n N70 C59 X8P doub 491 n y RU71 N68 X8P sing 492 n n RU71 N69 X8P sing 493 n n C44 C51 X8P doub 494 n y C44 N68 X8P sing 495 n y C01 C02 X8P sing 496 n n C51 C52 X8P sing 497 n y N68 C53 X8P doub 498 n y N22 C20 X8P sing 499 n n C04 C02 X8P sing 500 n n C02 O05 X8P sing 501 n n C64 C62 X8P doub 502 n y C52 C50 X8P doub 503 n y O21 C20 X8P doub 504 n n C53 C50 X8P sing 505 n y C59 C62 X8P sing 506 n y C59 C55 X8P sing 507 n n C20 C12 X8P sing 508 n n N69 C55 X8P doub 509 n y N69 C56 X8P sing 510 n y O05 C06 X8P sing 511 n n C55 C58 X8P sing 512 n y C12 S11 X8P sing 513 n n C12 C13 X8P sing 514 n n C60 C56 X8P sing 515 n n O07 C06 X8P doub 516 n n C56 C57 X8P doub 517 n y S11 C10 X8P sing 518 n n C19 C18 X8P doub 519 n y C19 C14 X8P sing 520 n y C06 N08 X8P sing 521 n n C18 C17 X8P sing 522 n y C58 C54 X8P doub 523 n y C13 C14 X8P sing 524 n n C14 C15 X8P doub 525 n y C57 C54 X8P sing 526 n y N08 C09 X8P sing 527 n n C17 C16 X8P doub 528 n y C10 C09 X8P sing 529 n n C09 C32 X8P sing 530 n n C15 C16 X8P sing 531 n y C32 C33 X8P sing 532 n n C38 C33 X8P doub 533 n y C38 C37 X8P sing 534 n y C33 C34 X8P sing 535 n y C37 C36 X8P doub 536 n y C34 C35 X8P doub 537 n y C36 C35 X8P sing 538 n y C10 H1 X8P sing 539 n n C10 H2 X8P sing 540 n n C12 H3 X8P sing 541 n n C13 H4 X8P sing 542 n n C13 H5 X8P sing 543 n n C15 H6 X8P sing 544 n n C16 H7 X8P sing 545 n n C17 H8 X8P sing 546 n n C18 H9 X8P sing 547 n n C19 H10 X8P sing 548 n n C23 H11 X8P sing 549 n n C24 H12 X8P sing 550 n n C25 H13 X8P sing 551 n n C25 H14 X8P sing 552 n n C27 H15 X8P sing 553 n n C01 H16 X8P sing 554 n n C01 H17 X8P sing 555 n n C01 H18 X8P sing 556 n n C03 H19 X8P sing 557 n n C03 H20 X8P sing 558 n n C03 H21 X8P sing 559 n n C04 H22 X8P sing 560 n n C04 H23 X8P sing 561 n n C04 H24 X8P sing 562 n n C09 H25 X8P sing 563 n n C29 H26 X8P sing 564 n n C30 H27 X8P sing 565 n n C31 H28 X8P sing 566 n n C32 H29 X8P sing 567 n n C32 H30 X8P sing 568 n n C34 H31 X8P sing 569 n n C35 H32 X8P sing 570 n n C36 H33 X8P sing 571 n n C37 H34 X8P sing 572 n n C38 H35 X8P sing 573 n n C39 H36 X8P sing 574 n n C40 H37 X8P sing 575 n n C41 H38 X8P sing 576 n n C46 H39 X8P sing 577 n n C47 H40 X8P sing 578 n n C48 H41 X8P sing 579 n n C49 H42 X8P sing 580 n n C50 H43 X8P sing 581 n n C51 H44 X8P sing 582 n n C52 H45 X8P sing 583 n n C53 H46 X8P sing 584 n n C54 H47 X8P sing 585 n n C57 H48 X8P sing 586 n n C58 H49 X8P sing 587 n n C60 H50 X8P sing 588 n n C60 H51 X8P sing 589 n n C60 H52 X8P sing 590 n n C61 H53 X8P sing 591 n n C62 H54 X8P sing 592 n n C64 H55 X8P sing 593 n n C65 H56 X8P sing 594 n n C65 H57 X8P sing 595 n n C65 H58 X8P sing 596 n n N08 H59 X8P sing 597 n n N22 H60 X8P sing 598 n n C23 H61 X8P sing 599 n n C24 H62 X8P sing 600 n n # _atom_sites.entry_id 7KSA _atom_sites.fract_transf_matrix[1][1] 0.01341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 X8P A 1 602 700 X8P RUT . D 4 HOH A 1 701 8 HOH HOH . D 4 HOH A 2 702 5 HOH HOH . D 4 HOH A 3 703 9 HOH HOH . D 4 HOH A 4 704 6 HOH HOH . D 4 HOH A 5 705 3 HOH HOH . D 4 HOH A 6 706 1 HOH HOH . D 4 HOH A 7 707 7 HOH HOH . D 4 HOH A 8 708 4 HOH HOH . D 4 HOH A 9 709 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 X8P . . . C 3 -18.342 -19.065 -6.062 1 157.06 ? C10 X8P 602 A 1 HETATM 2 C C12 X8P . . . C 3 -17.576 -16.904 -8.179 1 157.02 ? C12 X8P 602 A 1 HETATM 3 C C13 X8P . . . C 3 -17.785 -15.982 -6.943 1 154.47 ? C13 X8P 602 A 1 HETATM 4 C C14 X8P . . . C 3 -19.031 -15.087 -6.743 1 151.3 ? C14 X8P 602 A 1 HETATM 5 C C15 X8P . . . C 3 -19.2 -14.506 -5.48 1 149.36 ? C15 X8P 602 A 1 HETATM 6 C C16 X8P . . . C 3 -20.296 -13.678 -5.216 1 145.02 ? C16 X8P 602 A 1 HETATM 7 C C17 X8P . . . C 3 -21.235 -13.424 -6.22 1 142.54 ? C17 X8P 602 A 1 HETATM 8 C C18 X8P . . . C 3 -21.071 -14 -7.484 1 145.3 ? C18 X8P 602 A 1 HETATM 9 C C19 X8P . . . C 3 -19.973 -14.825 -7.744 1 147.23 ? C19 X8P 602 A 1 HETATM 10 C C20 X8P . . . C 3 -18.273 -16.498 -9.502 1 156.72 ? C20 X8P 602 A 1 HETATM 11 C C23 X8P . . . C 3 -18.377 -14.972 -11.573 1 151.79 ? C23 X8P 602 A 1 HETATM 12 C C24 X8P . . . C 3 -19.901 -15.038 -11.83 1 150.51 ? C24 X8P 602 A 1 HETATM 13 C C25 X8P . . . C 3 -20.429 -14.489 -13.178 1 152.99 ? C25 X8P 602 A 1 HETATM 14 C C26 X8P . . . C 3 -21.933 -14.191 -13.374 1 167.13 ? C26 X8P 602 A 1 HETATM 15 C C27 X8P . . . C 3 -22.816 -14.126 -12.29 1 193.67 ? C27 X8P 602 A 1 HETATM 16 C C01 X8P . . . C 3 -18.337 -20.945 -10.385 1 163.8 ? C01 X8P 602 A 1 HETATM 17 C C02 X8P . . . C 3 -19.745 -21.428 -9.992 1 160.47 ? C02 X8P 602 A 1 HETATM 18 C C03 X8P . . . C 3 -20.114 -22.644 -10.858 1 175.25 ? C03 X8P 602 A 1 HETATM 19 C C04 X8P . . . C 3 -20.763 -20.315 -10.298 1 165.45 ? C04 X8P 602 A 1 HETATM 20 C C06 X8P . . . C 3 -18.793 -21.865 -7.732 1 102.72 ? C06 X8P 602 A 1 HETATM 21 C C09 X8P . . . C 3 -19.438 -20.142 -5.97 1 133.79 ? C09 X8P 602 A 1 HETATM 22 C C29 X8P . . . C 3 -24.651 -13.626 -13.655 1 208.06 ? C29 X8P 602 A 1 HETATM 23 C C30 X8P . . . C 3 -23.817 -13.675 -14.782 1 188.74 ? C30 X8P 602 A 1 HETATM 24 C C31 X8P . . . C 3 -22.454 -13.958 -14.648 1 174.17 ? C31 X8P 602 A 1 HETATM 25 C C32 X8P . . . C 3 -20.121 -20.156 -4.589 1 117.74 ? C32 X8P 602 A 1 HETATM 26 C C33 X8P . . . C 3 -21.126 -19.024 -4.304 1 110.91 ? C33 X8P 602 A 1 HETATM 27 C C34 X8P . . . C 3 -22.46 -19.318 -3.996 1 115.63 ? C34 X8P 602 A 1 HETATM 28 C C35 X8P . . . C 3 -23.363 -18.278 -3.744 1 119.38 ? C35 X8P 602 A 1 HETATM 29 C C36 X8P . . . C 3 -22.936 -16.945 -3.803 1 113.64 ? C36 X8P 602 A 1 HETATM 30 C C37 X8P . . . C 3 -21.604 -16.652 -4.115 1 114.19 ? C37 X8P 602 A 1 HETATM 31 C C38 X8P . . . C 3 -20.701 -17.691 -4.366 1 109.63 ? C38 X8P 602 A 1 HETATM 32 C C39 X8P . . . C 3 -27.303 -9.524 -11.801 1 207.91 ? C39 X8P 602 A 1 HETATM 33 C C40 X8P . . . C 3 -28.056 -10.694 -11.955 1 217.09 ? C40 X8P 602 A 1 HETATM 34 C C41 X8P . . . C 3 -25.997 -9.623 -11.319 1 210.11 ? C41 X8P 602 A 1 HETATM 35 C C42 X8P . . . C 3 -25.507 -10.898 -11.03 1 226.29 ? C42 X8P 602 A 1 HETATM 36 C C43 X8P . . . C 3 -27.475 -11.929 -11.635 1 228.93 ? C43 X8P 602 A 1 HETATM 37 C C44 X8P . . . C 3 -24.219 -11.087 -10.551 1 220.31 ? C44 X8P 602 A 1 HETATM 38 C C45 X8P . . . C 3 -28.062 -13.188 -11.73 1 228.51 ? C45 X8P 602 A 1 HETATM 39 C C46 X8P . . . C 3 -29.191 -15.65 -11.905 1 208.08 ? C46 X8P 602 A 1 HETATM 40 C C47 X8P . . . C 3 -29.379 -13.284 -12.191 1 210.5 ? C47 X8P 602 A 1 HETATM 41 C C48 X8P . . . C 3 -27.875 -15.47 -11.452 1 224.37 ? C48 X8P 602 A 1 HETATM 42 C C49 X8P . . . C 3 -29.963 -14.546 -12.283 1 203.04 ? C49 X8P 602 A 1 HETATM 43 C C50 X8P . . . C 3 -21.732 -11.521 -9.623 1 195.89 ? C50 X8P 602 A 1 HETATM 44 C C51 X8P . . . C 3 -23.4 -9.973 -10.36 1 204.92 ? C51 X8P 602 A 1 HETATM 45 C C52 X8P . . . C 3 -22.111 -10.202 -9.879 1 195.29 ? C52 X8P 602 A 1 HETATM 46 C C53 X8P . . . C 3 -22.64 -12.567 -9.839 1 214.51 ? C53 X8P 602 A 1 HETATM 47 C C54 X8P . . . C 3 -26.47 -14.971 -6.287 1 230.12 ? C54 X8P 602 A 1 HETATM 48 C C55 X8P . . . C 3 -25.732 -15.338 -8.558 1 253.26 ? C55 X8P 602 A 1 HETATM 49 C C56 X8P . . . C 3 -26.369 -13.191 -7.919 1 242.74 ? C56 X8P 602 A 1 HETATM 50 C C57 X8P . . . C 3 -26.659 -13.629 -6.623 1 231.11 ? C57 X8P 602 A 1 HETATM 51 C C58 X8P . . . C 3 -26.001 -15.836 -7.277 1 238.77 ? C58 X8P 602 A 1 HETATM 52 C C59 X8P . . . C 3 -25.264 -16.235 -9.515 1 258.85 ? C59 X8P 602 A 1 HETATM 53 C C60 X8P . . . C 3 -26.616 -11.694 -8.169 1 235.26 ? C60 X8P 602 A 1 HETATM 54 C C61 X8P . . . C 3 -24.353 -18.107 -11.288 1 249.87 ? C61 X8P 602 A 1 HETATM 55 C C62 X8P . . . C 3 -25.109 -17.56 -9.093 1 257.37 ? C62 X8P 602 A 1 HETATM 56 C C63 X8P . . . C 3 -24.528 -16.767 -11.655 1 255.6 ? C63 X8P 602 A 1 HETATM 57 C C64 X8P . . . C 3 -24.646 -18.519 -9.989 1 251.79 ? C64 X8P 602 A 1 HETATM 58 C C65 X8P . . . C 3 -24.113 -16.717 -13.139 1 244.24 ? C65 X8P 602 A 1 HETATM 59 N N08 X8P . . . C 3 -18.925 -21.532 -6.285 1 121.88 ? N08 X8P 602 A 1 HETATM 60 N N22 X8P . . . C 3 -17.753 -15.377 -10.3 1 159.52 ? N22 X8P 602 A 1 HETATM 61 N N28 X8P . . . C 3 -24.131 -13.849 -12.432 1 225.07 ? N28 X8P 602 A 1 HETATM 62 N N66 X8P . . . C 3 -26.224 -12.007 -11.183 1 246.25 ? N66 X8P 602 A 1 HETATM 63 N N67 X8P . . . C 3 -27.318 -14.249 -11.367 1 243.48 ? N67 X8P 602 A 1 HETATM 64 N N68 X8P . . . C 3 -23.885 -12.365 -10.312 1 237.75 ? N68 X8P 602 A 1 HETATM 65 N N69 X8P . . . C 3 -25.919 -14.046 -8.847 1 259.98 ? N69 X8P 602 A 1 HETATM 66 N N70 X8P . . . C 3 -24.979 -15.841 -10.773 1 266.83 ? N70 X8P 602 A 1 HETATM 67 O O05 X8P . . . C 3 -19.846 -21.784 -8.602 1 131.14 ? O05 X8P 602 A 1 HETATM 68 O O07 X8P . . . C 3 -17.672 -22.392 -8.044 1 94.57 ? O07 X8P 602 A 1 HETATM 69 O O21 X8P . . . C 3 -19.246 -17.118 -9.878 1 152.13 ? O21 X8P 602 A 1 HETATM 70 S S11 X8P . . . C 3 -18.124 -18.597 -7.802 1 162.78 ? S11 X8P 602 A 1 HETATM 71 RU RU71 X8P . . . C 3 -25.411 -13.788 -10.743 1 286.66 ? RU71 X8P 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 71 #