data_7KUM # _model_server_result.job_id eSiNImmmR2nOzqqUUE1qtw _model_server_result.datetime_utc '2024-11-24 05:39:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":102}' # _entry.id 7KUM # _exptl.entry_id 7KUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KUM _cell.length_a 47.769 _cell.length_b 47.769 _cell.length_c 84.122 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' LKC 1 A LKC 1 1_555 A P LCC 2 A LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.577 ? covale ? covale2 A O3' LCC 2 A LCC 2 1_555 A P LCC 3 A LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale3 A O3' LCC 3 A LCC 3 1_555 A P LCG 4 A LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? covale ? covale4 A O3' LCG 4 A LCG 4 1_555 A P A 5 A A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.561 ? covale ? covale5 A O3' C 13 A C 17 1_555 A P LCG 14 A LCG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.58 ? covale ? covale6 B O3' LKC 1 B LKC 1 1_555 B P LCC 2 B LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.577 ? covale ? covale7 B O3' LCC 2 B LCC 2 1_555 B P LCC 3 B LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.533 ? covale ? covale8 B O3' LCC 3 B LCC 3 1_555 B P LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.57 ? covale ? covale9 B O3' LCG 4 B LCG 4 1_555 B P A 5 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? covale ? covale10 B O3' C 13 B C 17 1_555 B P LCG 14 B LCG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? metalc ? metalc1 C O3D GP3 . A GP3 101 1_555 G MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 C O2D GP3 . A GP3 101 1_555 G MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc3 C O3D GP3 . A GP3 101 1_555 G MG MG . B MG 102 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc4 C O2D GP3 . A GP3 101 1_555 G MG MG . B MG 102 3_575 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 C O2A GP3 . A GP3 101 1_555 H MG MG . B MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc6 C O3B GP3 . A GP3 101 1_555 H MG MG . B MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc7 C O2G GP3 . A GP3 101 1_555 H MG MG . B MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc8 D MG MG . A MG 102 1_555 F O3D GP3 . B GP3 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc9 D MG MG . A MG 102 1_555 F O2D GP3 . B GP3 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc10 D MG MG . A MG 102 1_555 F O3D GP3 . B GP3 101 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc11 D MG MG . A MG 102 1_555 F O2D GP3 . B GP3 101 3_575 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc12 E MG MG . A MG 103 1_555 F O3B GP3 . B GP3 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc13 E MG MG . A MG 103 1_555 F O2A GP3 . B GP3 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc14 E MG MG . A MG 103 1_555 J O HOH . B HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc15 E MG MG . A MG 103 1_555 J O HOH . B HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? hydrog WATSON-CRICK hydrog1 A N1 LCG 4 A LCG 4 1_555 B N3 C 13 B C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 LCG 4 A LCG 4 1_555 B O2 C 13 B C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 LCG 4 A LCG 4 1_555 B N4 C 13 B C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 A 5 A A 9 1_555 B N3 U 12 B U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 A 5 A A 9 1_555 B O4 U 12 B U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 C 6 A C 10 1_555 B N1 G 11 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 C 6 A C 10 1_555 B O6 G 11 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 C 6 A C 10 1_555 B N2 G 11 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 U 7 A U 11 1_555 B N1 A 10 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 U 7 A U 11 1_555 B N6 A 10 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 U 8 A U 12 1_555 B N1 A 9 B A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 U 8 A U 12 1_555 B N6 A 9 B A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 A 9 A A 13 1_555 B N3 U 8 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 A 9 A A 13 1_555 B O4 U 8 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 A 10 A A 14 1_555 B N3 U 7 B U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 A 10 A A 14 1_555 B O4 U 7 B U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 G 11 A G 15 1_555 B N3 C 6 B C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 G 11 A G 15 1_555 B O2 C 6 B C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 G 11 A G 15 1_555 B N4 C 6 B C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 U 12 A U 16 1_555 B N1 A 5 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 U 12 A U 16 1_555 B N6 A 5 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 C 13 A C 17 1_555 B N1 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 C 13 A C 17 1_555 B O6 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 C 13 A C 17 1_555 B N2 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KUM _atom_sites.fract_transf_matrix[1][1] 0.020934 _atom_sites.fract_transf_matrix[1][2] 0.012086 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GP3 A 1 101 101 GP3 GP3 . D 3 MG A 1 102 1 MG MG . E 3 MG A 1 103 6 MG MG . F 2 GP3 B 1 101 101 GP3 GP3 . G 3 MG B 1 102 2 MG MG . H 3 MG B 1 103 7 MG MG . I 4 HOH A 1 201 106 HOH HOH . I 4 HOH A 2 202 49 HOH HOH . I 4 HOH A 3 203 94 HOH HOH . I 4 HOH A 4 204 99 HOH HOH . I 4 HOH A 5 205 52 HOH HOH . I 4 HOH A 6 206 119 HOH HOH . I 4 HOH A 7 207 81 HOH HOH . I 4 HOH A 8 208 105 HOH HOH . I 4 HOH A 9 209 77 HOH HOH . I 4 HOH A 10 210 38 HOH HOH . I 4 HOH A 11 211 42 HOH HOH . I 4 HOH A 12 212 83 HOH HOH . I 4 HOH A 13 213 117 HOH HOH . I 4 HOH A 14 214 58 HOH HOH . I 4 HOH A 15 215 123 HOH HOH . I 4 HOH A 16 216 78 HOH HOH . I 4 HOH A 17 217 44 HOH HOH . I 4 HOH A 18 218 17 HOH HOH . I 4 HOH A 19 219 122 HOH HOH . I 4 HOH A 20 220 43 HOH HOH . I 4 HOH A 21 221 102 HOH HOH . I 4 HOH A 22 222 100 HOH HOH . I 4 HOH A 23 223 56 HOH HOH . I 4 HOH A 24 224 9 HOH HOH . I 4 HOH A 25 225 8 HOH HOH . I 4 HOH A 26 226 116 HOH HOH . I 4 HOH A 27 227 19 HOH HOH . I 4 HOH A 28 228 21 HOH HOH . I 4 HOH A 29 229 47 HOH HOH . I 4 HOH A 30 230 97 HOH HOH . I 4 HOH A 31 231 70 HOH HOH . I 4 HOH A 32 232 1 HOH HOH . I 4 HOH A 33 233 35 HOH HOH . I 4 HOH A 34 234 67 HOH HOH . I 4 HOH A 35 235 6 HOH HOH . I 4 HOH A 36 236 50 HOH HOH . I 4 HOH A 37 237 118 HOH HOH . I 4 HOH A 38 238 34 HOH HOH . I 4 HOH A 39 239 7 HOH HOH . I 4 HOH A 40 240 5 HOH HOH . I 4 HOH A 41 241 53 HOH HOH . I 4 HOH A 42 242 79 HOH HOH . I 4 HOH A 43 243 71 HOH HOH . I 4 HOH A 44 244 101 HOH HOH . I 4 HOH A 45 245 82 HOH HOH . I 4 HOH A 46 246 104 HOH HOH . I 4 HOH A 47 247 107 HOH HOH . I 4 HOH A 48 248 75 HOH HOH . I 4 HOH A 49 249 74 HOH HOH . I 4 HOH A 50 250 45 HOH HOH . I 4 HOH A 51 251 98 HOH HOH . I 4 HOH A 52 252 4 HOH HOH . I 4 HOH A 53 253 68 HOH HOH . I 4 HOH A 54 254 51 HOH HOH . J 4 HOH B 1 201 121 HOH HOH . J 4 HOH B 2 202 60 HOH HOH . J 4 HOH B 3 203 73 HOH HOH . J 4 HOH B 4 204 120 HOH HOH . J 4 HOH B 5 205 108 HOH HOH . J 4 HOH B 6 206 65 HOH HOH . J 4 HOH B 7 207 40 HOH HOH . J 4 HOH B 8 208 57 HOH HOH . J 4 HOH B 9 209 111 HOH HOH . J 4 HOH B 10 210 91 HOH HOH . J 4 HOH B 11 211 29 HOH HOH . J 4 HOH B 12 212 20 HOH HOH . J 4 HOH B 13 213 92 HOH HOH . J 4 HOH B 14 214 114 HOH HOH . J 4 HOH B 15 215 55 HOH HOH . J 4 HOH B 16 216 84 HOH HOH . J 4 HOH B 17 217 93 HOH HOH . J 4 HOH B 18 218 61 HOH HOH . J 4 HOH B 19 219 16 HOH HOH . J 4 HOH B 20 220 3 HOH HOH . J 4 HOH B 21 221 72 HOH HOH . J 4 HOH B 22 222 2 HOH HOH . J 4 HOH B 23 223 28 HOH HOH . J 4 HOH B 24 224 37 HOH HOH . J 4 HOH B 25 225 63 HOH HOH . J 4 HOH B 26 226 31 HOH HOH . J 4 HOH B 27 227 64 HOH HOH . J 4 HOH B 28 228 25 HOH HOH . J 4 HOH B 29 229 115 HOH HOH . J 4 HOH B 30 230 24 HOH HOH . J 4 HOH B 31 231 12 HOH HOH . J 4 HOH B 32 232 85 HOH HOH . J 4 HOH B 33 233 14 HOH HOH . J 4 HOH B 34 234 59 HOH HOH . J 4 HOH B 35 235 11 HOH HOH . J 4 HOH B 36 236 69 HOH HOH . J 4 HOH B 37 237 76 HOH HOH . J 4 HOH B 38 238 90 HOH HOH . J 4 HOH B 39 239 15 HOH HOH . J 4 HOH B 40 240 10 HOH HOH . J 4 HOH B 41 241 36 HOH HOH . J 4 HOH B 42 242 39 HOH HOH . J 4 HOH B 43 243 95 HOH HOH . J 4 HOH B 44 244 13 HOH HOH . J 4 HOH B 45 245 80 HOH HOH . J 4 HOH B 46 246 32 HOH HOH . J 4 HOH B 47 247 87 HOH HOH . J 4 HOH B 48 248 88 HOH HOH . J 4 HOH B 49 249 113 HOH HOH . J 4 HOH B 50 250 112 HOH HOH . J 4 HOH B 51 251 96 HOH HOH . J 4 HOH B 52 252 62 HOH HOH . J 4 HOH B 53 253 66 HOH HOH . J 4 HOH B 54 254 103 HOH HOH . J 4 HOH B 55 255 46 HOH HOH . J 4 HOH B 56 256 33 HOH HOH . J 4 HOH B 57 257 86 HOH HOH . J 4 HOH B 58 258 110 HOH HOH . J 4 HOH B 59 259 18 HOH HOH . J 4 HOH B 60 260 109 HOH HOH . J 4 HOH B 61 261 48 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.245 _atom_site.Cartn_y 54.996 _atom_site.Cartn_z 208.664 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 5.14 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #