data_7KUO # _model_server_result.job_id WDCyvEEEla5koY_pWUf7aQ _model_server_result.datetime_utc '2024-11-22 14:56:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kuo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 7KUO # _exptl.entry_id 7KUO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KUO _cell.length_a 49.072 _cell.length_b 49.072 _cell.length_c 81.254 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KUO _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' LKC 1 A LKC 1 1_555 A P LCC 2 A LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale2 A O3' LCC 2 A LCC 2 1_555 A P LCC 3 A LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.551 ? covale ? covale3 A O3' LCC 3 A LCC 3 1_555 A P LCG 4 A LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.634 ? covale ? covale4 A O3' LCG 4 A LCG 4 1_555 A P A 5 A A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale5 A O3' C 13 A C 17 1_555 A P GFL 14 A GFL 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale6 B O3' LKC 1 B LKC 1 1_555 B P LCC 2 B LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.535 ? covale ? covale7 B O3' LCC 2 B LCC 2 1_555 B P LCC 3 B LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.552 ? covale ? covale8 B O3' LCC 3 B LCC 3 1_555 B P LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? covale ? covale9 B O3' LCG 4 B LCG 4 1_555 B P A 5 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale10 B O3' C 13 B C 17 1_555 B P GFL 14 B GFL 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? metalc ? metalc1 C O3D GP3 . A GP3 101 1_555 H MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 C O2D GP3 . A GP3 101 1_555 H MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 C O3D GP3 . A GP3 101 1_555 H MG MG . B MG 102 2_745 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 C O2D GP3 . A GP3 101 1_555 H MG MG . B MG 102 3_875 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc5 D MG MG . A MG 102 1_555 G O3D GP3 . B GP3 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc6 D MG MG . A MG 102 1_555 G O2D GP3 . B GP3 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc7 D MG MG . A MG 102 1_555 G O3D GP3 . B GP3 101 2_745 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc8 D MG MG . A MG 102 1_555 G O2D GP3 . B GP3 101 2_745 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc9 E MG MG . A MG 103 1_555 J O HOH . A HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc10 E MG MG . A MG 103 1_555 J O HOH . A HOH 222 2_745 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc11 E MG MG . A MG 103 1_555 K O HOH . B HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc12 E MG MG . A MG 103 1_555 K O HOH . B HOH 225 2_745 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc13 F MG MG . A MG 104 1_555 J O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc14 F MG MG . A MG 104 1_555 J O HOH . A HOH 207 3_875 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc15 I MG MG . B MG 103 1_555 K O HOH . B HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc16 I MG MG . B MG 103 1_555 K O HOH . B HOH 204 2_745 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? hydrog WATSON-CRICK hydrog1 A N1 LCG 4 A LCG 4 1_555 B N3 C 13 B C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 LCG 4 A LCG 4 1_555 B O2 C 13 B C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 LCG 4 A LCG 4 1_555 B N4 C 13 B C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 A 5 A A 9 1_555 B N3 U 12 B U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 A 5 A A 9 1_555 B O4 U 12 B U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 C 6 A C 10 1_555 B N1 G 11 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 C 6 A C 10 1_555 B O6 G 11 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 C 6 A C 10 1_555 B N2 G 11 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 U 7 A U 11 1_555 B N1 A 10 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 U 7 A U 11 1_555 B N6 A 10 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 U 8 A U 12 1_555 B N1 A 9 B A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 U 8 A U 12 1_555 B N6 A 9 B A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 A 9 A A 13 1_555 B N3 U 8 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 A 9 A A 13 1_555 B O4 U 8 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 A 10 A A 14 1_555 B N3 U 7 B U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 A 10 A A 14 1_555 B O4 U 7 B U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 G 11 A G 15 1_555 B N3 C 6 B C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 G 11 A G 15 1_555 B O2 C 6 B C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 G 11 A G 15 1_555 B N4 C 6 B C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 U 12 A U 16 1_555 B N1 A 5 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 U 12 A U 16 1_555 B N6 A 5 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 C 13 A C 17 1_555 B N1 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 C 13 A C 17 1_555 B O6 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 C 13 A C 17 1_555 B N2 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KUO _atom_sites.fract_transf_matrix[1][1] 0.020378 _atom_sites.fract_transf_matrix[1][2] 0.011765 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GP3 A 1 101 101 GP3 GP3 . D 3 MG A 1 102 1 MG MG . E 3 MG A 1 103 5 MG MG . F 3 MG A 1 104 7 MG MG . G 2 GP3 B 1 101 101 GP3 GP3 . H 3 MG B 1 102 2 MG MG . I 3 MG B 1 103 6 MG MG . J 4 HOH A 1 201 11 HOH HOH . J 4 HOH A 2 202 12 HOH HOH . J 4 HOH A 3 203 22 HOH HOH . J 4 HOH A 4 204 26 HOH HOH . J 4 HOH A 5 205 27 HOH HOH . J 4 HOH A 6 206 32 HOH HOH . J 4 HOH A 7 207 1 HOH HOH . J 4 HOH A 8 208 29 HOH HOH . J 4 HOH A 9 209 25 HOH HOH . J 4 HOH A 10 210 48 HOH HOH . J 4 HOH A 11 211 10 HOH HOH . J 4 HOH A 12 212 6 HOH HOH . J 4 HOH A 13 213 46 HOH HOH . J 4 HOH A 14 214 44 HOH HOH . J 4 HOH A 15 215 30 HOH HOH . J 4 HOH A 16 216 8 HOH HOH . J 4 HOH A 17 217 41 HOH HOH . J 4 HOH A 18 218 7 HOH HOH . J 4 HOH A 19 219 23 HOH HOH . J 4 HOH A 20 220 51 HOH HOH . J 4 HOH A 21 221 37 HOH HOH . J 4 HOH A 22 222 2 HOH HOH . K 4 HOH B 1 201 14 HOH HOH . K 4 HOH B 2 202 42 HOH HOH . K 4 HOH B 3 203 40 HOH HOH . K 4 HOH B 4 204 4 HOH HOH . K 4 HOH B 5 205 17 HOH HOH . K 4 HOH B 6 206 21 HOH HOH . K 4 HOH B 7 207 28 HOH HOH . K 4 HOH B 8 208 19 HOH HOH . K 4 HOH B 9 209 20 HOH HOH . K 4 HOH B 10 210 35 HOH HOH . K 4 HOH B 11 211 38 HOH HOH . K 4 HOH B 12 212 15 HOH HOH . K 4 HOH B 13 213 13 HOH HOH . K 4 HOH B 14 214 18 HOH HOH . K 4 HOH B 15 215 49 HOH HOH . K 4 HOH B 16 216 9 HOH HOH . K 4 HOH B 17 217 5 HOH HOH . K 4 HOH B 18 218 24 HOH HOH . K 4 HOH B 19 219 34 HOH HOH . K 4 HOH B 20 220 31 HOH HOH . K 4 HOH B 21 221 50 HOH HOH . K 4 HOH B 22 222 36 HOH HOH . K 4 HOH B 23 223 47 HOH HOH . K 4 HOH B 24 224 43 HOH HOH . K 4 HOH B 25 225 3 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 73.474 _atom_site.Cartn_y 14.57 _atom_site.Cartn_z 163.458 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 18.52 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #