data_7KVH # _model_server_result.job_id caw6zxpN3CnvdgaiQSi7dA _model_server_result.datetime_utc '2024-11-25 10:58:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7KVH # _exptl.entry_id 7KVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.73 _cell.angle_gamma 90 _cell.entry_id 7KVH _cell.length_a 152.944 _cell.length_b 94.815 _cell.length_c 93.174 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 D N28 X5Y . A X5Y 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 E FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc4 E FE HEM . B HEM 601 1_555 F N28 X5Y . B X5Y 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7KVH _atom_sites.fract_transf_matrix[1][1] 0.006538 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004366 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 500 HEM HEM . D 3 X5Y A 1 602 700 X5Y 377 . E 2 HEM B 1 601 500 HEM HEM . F 3 X5Y B 1 602 700 X5Y 377 . G 4 HOH A 1 701 12 HOH HOH . G 4 HOH A 2 702 13 HOH HOH . G 4 HOH A 3 703 7 HOH HOH . G 4 HOH A 4 704 14 HOH HOH . G 4 HOH A 5 705 1 HOH HOH . G 4 HOH A 6 706 3 HOH HOH . G 4 HOH A 7 707 11 HOH HOH . G 4 HOH A 8 708 9 HOH HOH . G 4 HOH A 9 709 15 HOH HOH . G 4 HOH A 10 710 17 HOH HOH . G 4 HOH A 11 711 19 HOH HOH . G 4 HOH A 12 712 16 HOH HOH . G 4 HOH A 13 713 18 HOH HOH . G 4 HOH A 14 714 4 HOH HOH . G 4 HOH A 15 715 10 HOH HOH . H 4 HOH B 1 701 22 HOH HOH . H 4 HOH B 2 702 20 HOH HOH . H 4 HOH B 3 703 6 HOH HOH . H 4 HOH B 4 704 25 HOH HOH . H 4 HOH B 5 705 8 HOH HOH . H 4 HOH B 6 706 24 HOH HOH . H 4 HOH B 7 707 21 HOH HOH . H 4 HOH B 8 708 23 HOH HOH . H 4 HOH B 9 709 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 20.864 -20.562 15.525 1 41.03 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . C 2 24.112 -23.112 12.961 1 42.41 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . C 2 21.73 -27.201 14.022 1 42.44 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . C 2 18.533 -24.673 16.661 1 62.39 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . C 2 21.962 -20.893 14.761 1 58.08 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . C 2 22.984 -19.979 14.292 1 47.76 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . C 2 23.876 -20.679 13.586 1 49.07 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . C 2 23.459 -22.067 13.581 1 41.98 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . C 2 25.136 -20.115 12.896 1 49.11 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . C 2 23.024 -18.458 14.56 1 48.74 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . C 2 24.022 -18.154 15.672 1 52.73 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . C 2 24.168 -16.663 15.827 1 67.97 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . C 2 25.027 -16.226 16.634 1 43.38 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . C 2 23.426 -15.912 15.142 1 64.39 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . C 2 23.768 -24.445 13.038 1 42.48 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . C 2 24.51 -25.552 12.467 1 43.14 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . C 2 23.85 -26.69 12.759 1 43.16 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . C 2 22.673 -26.327 13.526 1 54.95 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . C 2 25.825 -25.368 11.673 1 43.87 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . C 2 24.187 -28.163 12.403 1 70.5 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . C 2 25.277 -28.564 11.738 1 50.01 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . C 2 20.714 -26.89 14.902 1 41.99 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . C 2 19.933 -27.834 15.675 1 59.02 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . C 2 19.049 -27.154 16.408 1 53.84 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . C 2 19.233 -25.737 16.127 1 59.18 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . C 2 20.094 -29.369 15.657 1 59.76 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . C 2 18.033 -27.825 17.367 1 47.33 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . C 2 17.153 -27.131 18.097 1 76.37 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . C 2 18.87 -23.339 16.569 1 69.38 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . C 2 18.143 -22.232 17.156 1 61.36 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . C 2 18.782 -21.102 16.842 1 40.66 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . C 2 19.943 -21.446 16.046 1 81.86 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . C 2 16.851 -22.342 17.994 1 40.62 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . C 2 18.367 -19.676 17.26 1 40.7 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . C 2 18.89 -19.413 18.668 1 71.6 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . C 2 18.428 -18.064 19.151 1 57.93 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . C 2 18.612 -17.77 20.36 1 58.98 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . C 2 17.874 -17.287 18.332 1 72.02 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . C 2 22.287 -22.159 14.309 1 70.96 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . C 2 22.655 -24.955 13.675 1 42.1 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . C 2 20.258 -25.622 15.204 1 76.01 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . C 2 19.962 -22.821 15.9 1 70.62 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . C 2 21.287 -23.893 14.77 1 85.4 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #