data_7KVI # _model_server_result.job_id IeQbMhjsMDxmtPLEcRpPHg _model_server_result.datetime_utc '2024-11-30 03:12:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kvi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7KVI # _exptl.entry_id 7KVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 533.725 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2R)-1-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KVI _cell.length_a 76.82 _cell.length_b 102.57 _cell.length_c 126.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -76.82 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 D N28 X7P . A X7P 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? # _chem_comp.formula 'C31 H39 N3 O3 S' _chem_comp.formula_weight 533.725 _chem_comp.id X7P _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2R)-1-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 X7P sing 471 n n C04 C02 X7P sing 472 n n C02 C03 X7P sing 473 n n C02 O05 X7P sing 474 n n C17 C18 X7P doub 475 n y C17 C16 X7P sing 476 n y C18 C19 X7P sing 477 n y C29 C30 X7P doub 478 n y C29 N28 X7P sing 479 n y O07 C06 X7P doub 480 n n C16 C15 X7P doub 481 n y C30 C31 X7P sing 482 n y O05 C06 X7P sing 483 n n N28 C27 X7P doub 484 n y C06 N08 X7P sing 485 n n C19 C14 X7P doub 486 n y C15 C14 X7P sing 487 n y C31 C26 X7P doub 488 n y C14 C13 X7P sing 489 n n C27 C26 X7P sing 490 n y N08 C09 X7P sing 491 n n C09 C32 X7P sing 492 n n C09 C10 X7P sing 493 n n C26 C25 X7P sing 494 n n C32 C33 X7P sing 495 n n C13 C12 X7P sing 496 n n C10 S11 X7P sing 497 n n C12 S11 X7P sing 498 n n C12 C20 X7P sing 499 n n C25 C24 X7P sing 500 n n C23 C24 X7P sing 501 n n C23 N22 X7P sing 502 n n C33 C38 X7P doub 503 n y C33 C34 X7P sing 504 n y C38 C37 X7P sing 505 n y C20 N22 X7P sing 506 n n C20 O21 X7P doub 507 n n C34 C35 X7P doub 508 n y C37 C36 X7P doub 509 n y C35 C36 X7P sing 510 n y C10 H1 X7P sing 511 n n C10 H2 X7P sing 512 n n C03 H3 X7P sing 513 n n C03 H4 X7P sing 514 n n C03 H5 X7P sing 515 n n C04 H6 X7P sing 516 n n C04 H7 X7P sing 517 n n C04 H8 X7P sing 518 n n C09 H9 X7P sing 519 n n C12 H10 X7P sing 520 n n C13 H11 X7P sing 521 n n C13 H12 X7P sing 522 n n C01 H13 X7P sing 523 n n C01 H14 X7P sing 524 n n C01 H15 X7P sing 525 n n C15 H16 X7P sing 526 n n C16 H17 X7P sing 527 n n C17 H18 X7P sing 528 n n C18 H19 X7P sing 529 n n C19 H20 X7P sing 530 n n C23 H21 X7P sing 531 n n C23 H22 X7P sing 532 n n C24 H23 X7P sing 533 n n C24 H24 X7P sing 534 n n C25 H25 X7P sing 535 n n C25 H26 X7P sing 536 n n C27 H27 X7P sing 537 n n C29 H28 X7P sing 538 n n C30 H29 X7P sing 539 n n C31 H30 X7P sing 540 n n C32 H31 X7P sing 541 n n C32 H32 X7P sing 542 n n C34 H33 X7P sing 543 n n C35 H34 X7P sing 544 n n C36 H35 X7P sing 545 n n C37 H36 X7P sing 546 n n C38 H37 X7P sing 547 n n N08 H38 X7P sing 548 n n N22 H39 X7P sing 549 n n # _atom_sites.entry_id 7KVI _atom_sites.fract_transf_matrix[1][1] 0.013017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 GOL A 1 602 600 GOL GOL . D 4 X7P A 1 603 700 X7P 377 . E 5 HOH A 1 701 18 HOH HOH . E 5 HOH A 2 702 15 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 8 HOH HOH . E 5 HOH A 5 705 2 HOH HOH . E 5 HOH A 6 706 11 HOH HOH . E 5 HOH A 7 707 10 HOH HOH . E 5 HOH A 8 708 4 HOH HOH . E 5 HOH A 9 709 5 HOH HOH . E 5 HOH A 10 710 21 HOH HOH . E 5 HOH A 11 711 19 HOH HOH . E 5 HOH A 12 712 17 HOH HOH . E 5 HOH A 13 713 20 HOH HOH . E 5 HOH A 14 714 16 HOH HOH . E 5 HOH A 15 715 9 HOH HOH . E 5 HOH A 16 716 6 HOH HOH . E 5 HOH A 17 717 13 HOH HOH . E 5 HOH A 18 718 22 HOH HOH . E 5 HOH A 19 719 7 HOH HOH . E 5 HOH A 20 720 12 HOH HOH . E 5 HOH A 21 721 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 X7P . . . D 4 -14.907 -36.302 -7.684 1 166.6 ? C10 X7P 603 A 1 HETATM 2 C C02 X7P . . . D 4 -11.164 -36.844 -12.12 1 162.81 ? C02 X7P 603 A 1 HETATM 3 C C03 X7P . . . D 4 -9.964 -37.799 -11.998 1 164.16 ? C03 X7P 603 A 1 HETATM 4 C C04 X7P . . . D 4 -12.404 -37.612 -12.577 1 157.46 ? C04 X7P 603 A 1 HETATM 5 C C06 X7P . . . D 4 -12.488 -35.481 -10.481 1 179.53 ? C06 X7P 603 A 1 HETATM 6 C C09 X7P . . . D 4 -14.399 -35.24 -8.797 1 171.91 ? C09 X7P 603 A 1 HETATM 7 C C12 X7P . . . D 4 -17.471 -34.504 -7.236 1 151.03 ? C12 X7P 603 A 1 HETATM 8 C C13 X7P . . . D 4 -18.876 -34.623 -7.895 1 146.5 ? C13 X7P 603 A 1 HETATM 9 C C01 X7P . . . D 4 -10.835 -35.855 -13.265 1 152.88 ? C01 X7P 603 A 1 HETATM 10 C C14 X7P . . . D 4 -18.936 -34.128 -9.328 1 124.98 ? C14 X7P 603 A 1 HETATM 11 C C15 X7P . . . D 4 -19.529 -32.91 -9.695 1 111.78 ? C15 X7P 603 A 1 HETATM 12 C C16 X7P . . . D 4 -19.55 -32.477 -11.024 1 118.04 ? C16 X7P 603 A 1 HETATM 13 C C17 X7P . . . D 4 -18.969 -33.241 -12.03 1 124.79 ? C17 X7P 603 A 1 HETATM 14 C C18 X7P . . . D 4 -18.368 -34.443 -11.683 1 129.53 ? C18 X7P 603 A 1 HETATM 15 C C19 X7P . . . D 4 -18.355 -34.864 -10.355 1 127.22 ? C19 X7P 603 A 1 HETATM 16 C C20 X7P . . . D 4 -17.436 -33.758 -5.877 1 149.32 ? C20 X7P 603 A 1 HETATM 17 C C23 X7P . . . D 4 -17.464 -31.477 -7.004 1 106.37 ? C23 X7P 603 A 1 HETATM 18 C C24 X7P . . . D 4 -17.79 -29.996 -6.665 1 99.87 ? C24 X7P 603 A 1 HETATM 19 C C25 X7P . . . D 4 -19.18 -29.544 -7.167 1 111.45 ? C25 X7P 603 A 1 HETATM 20 C C26 X7P . . . D 4 -19.308 -29.258 -8.659 1 102.7 ? C26 X7P 603 A 1 HETATM 21 C C27 X7P . . . D 4 -20.571 -29.018 -9.235 1 85.28 ? C27 X7P 603 A 1 HETATM 22 C C29 X7P . . . D 4 -19.741 -28.715 -11.378 1 102.37 ? C29 X7P 603 A 1 HETATM 23 C C30 X7P . . . D 4 -18.439 -28.939 -10.919 1 101.08 ? C30 X7P 603 A 1 HETATM 24 C C31 X7P . . . D 4 -18.236 -29.206 -9.559 1 86 ? C31 X7P 603 A 1 HETATM 25 C C32 X7P . . . D 4 -14.463 -33.688 -8.401 1 169.15 ? C32 X7P 603 A 1 HETATM 26 C C33 X7P . . . D 4 -14.231 -33.157 -6.973 1 167.91 ? C33 X7P 603 A 1 HETATM 27 C C34 X7P . . . D 4 -14.132 -33.925 -5.799 1 168.08 ? C34 X7P 603 A 1 HETATM 28 C C35 X7P . . . D 4 -13.929 -33.347 -4.547 1 162.54 ? C35 X7P 603 A 1 HETATM 29 C C36 X7P . . . D 4 -13.813 -31.971 -4.42 1 157.5 ? C36 X7P 603 A 1 HETATM 30 C C37 X7P . . . D 4 -13.903 -31.189 -5.557 1 157.37 ? C37 X7P 603 A 1 HETATM 31 C C38 X7P . . . D 4 -14.106 -31.782 -6.799 1 161.03 ? C38 X7P 603 A 1 HETATM 32 N N08 X7P . . . D 4 -13.033 -35.641 -9.2 1 178.59 ? N08 X7P 603 A 1 HETATM 33 N N22 X7P . . . D 4 -17.434 -32.368 -5.815 1 133.07 ? N22 X7P 603 A 1 HETATM 34 N N28 X7P . . . D 4 -20.802 -28.755 -10.54 1 80.98 ? N28 X7P 603 A 1 HETATM 35 O O05 X7P . . . D 4 -11.363 -36.21 -10.838 1 176.89 ? O05 X7P 603 A 1 HETATM 36 O O07 X7P . . . D 4 -12.751 -34.494 -11.175 1 176.44 ? O07 X7P 603 A 1 HETATM 37 O O21 X7P . . . D 4 -17.41 -34.388 -4.803 1 156.79 ? O21 X7P 603 A 1 HETATM 38 S S11 X7P . . . D 4 -16.673 -36.206 -7.012 1 159.36 ? S11 X7P 603 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 38 #