data_7KVJ # _model_server_result.job_id kf6c1QwPAtlOw-EzB4WwgA _model_server_result.datetime_utc '2024-11-25 21:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7KVJ # _exptl.entry_id 7KVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KVJ _cell.length_a 75.809 _cell.length_b 100.45 _cell.length_c 124.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -100.45 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N28 X7M . A X7M 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7KVJ _atom_sites.fract_transf_matrix[1][1] 0.013191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 X7M A 1 602 700 X7M 111 . D 4 HOH A 1 701 2 HOH HOH . D 4 HOH A 2 702 4 HOH HOH . D 4 HOH A 3 703 1 HOH HOH . D 4 HOH A 4 704 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -22.997 -30.472 -8.743 1 80.16 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -22.321 -27.721 -12.694 1 76.11 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -21.611 -23.854 -9.858 1 93.98 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -22.58 -26.533 -5.924 1 82.49 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -22.878 -30.071 -10.057 1 96.68 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -23.031 -30.914 -11.226 1 93.84 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -22.843 -30.155 -12.31 1 72.42 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -22.569 -28.802 -11.875 1 61.19 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -22.906 -30.623 -13.779 1 57.18 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -23.345 -32.426 -11.207 1 69.65 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -24.815 -32.66 -11.538 1 97.42 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -25.076 -34.139 -11.641 1 89.03 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -26.153 -34.522 -12.168 1 72.95 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -24.207 -34.936 -11.202 1 113.89 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -22.087 -26.427 -12.279 1 88.66 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -21.891 -25.277 -13.139 1 86.01 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -21.693 -24.2 -12.353 1 74.68 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -21.761 -24.649 -10.975 1 79.1 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -21.919 -25.36 -14.683 1 102.45 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -21.433 -22.718 -12.732 1 81.12 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -21.367 -22.244 -13.982 1 92.57 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -21.882 -24.218 -8.555 1 100.14 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -21.999 -23.319 -7.427 1 108.55 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -22.266 -24.039 -6.334 1 88.98 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -22.33 -25.44 -6.729 1 81.04 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -21.841 -21.784 -7.479 1 123.6 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -22.46 -23.42 -4.926 1 67.11 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -22.713 -24.15 -3.834 1 97.34 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -22.744 -27.838 -6.339 1 87.61 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -22.949 -28.988 -5.48 1 77.18 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -23.061 -30.071 -6.255 1 84.69 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -22.937 -29.652 -7.636 1 80.46 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -23.016 -28.955 -3.938 1 79.93 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -23.293 -31.521 -5.776 1 73.94 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -24.765 -31.698 -5.417 1 105.93 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -25.014 -33.099 -4.925 1 98.67 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -26.115 -33.348 -4.369 1 99.02 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -24.114 -33.964 -5.083 1 101.43 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -22.6 -28.788 -10.492 1 79.01 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -22.001 -26.007 -10.967 1 79.66 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -22.09 -25.503 -8.091 1 79.84 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -22.743 -28.283 -7.648 1 72.77 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -22.359 -27.143 -9.295 1 92.39 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #