data_7KVJ
#
_model_server_result.job_id            jlWsSaPMG0Omw9yP90Y3ZQ 
_model_server_result.datetime_utc      '2024-11-25 21:26:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    7KVJ 
#
_exptl.entry_id    7KVJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              533.725 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2S)-1-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KVJ 
_cell.length_a            75.809 
_cell.length_b            100.45 
_cell.length_c            124.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -100.45 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N28 X7M . A X7M 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
#
_chem_comp.formula           'C31 H39 N3 O3 S' 
_chem_comp.formula_weight    533.725 
_chem_comp.id                X7M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2S)-1-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 X7M sing 458 n n 
C04 C02 X7M sing 459 n n 
C02 C03 X7M sing 460 n n 
C02 O05 X7M sing 461 n n 
C37 C36 X7M doub 462 n y 
C37 C38 X7M sing 463 n y 
C36 C35 X7M sing 464 n y 
C29 C30 X7M doub 465 n y 
C29 N28 X7M sing 466 n y 
O05 C06 X7M sing 467 n n 
C30 C31 X7M sing 468 n y 
C38 C33 X7M doub 469 n y 
N28 C27 X7M doub 470 n y 
C35 C34 X7M doub 471 n y 
C06 O07 X7M doub 472 n n 
C06 N08 X7M sing 473 n n 
C31 C26 X7M doub 474 n y 
C33 C34 X7M sing 475 n y 
C33 C32 X7M sing 476 n n 
C27 C26 X7M sing 477 n y 
N08 C09 X7M sing 478 n n 
C26 C25 X7M sing 479 n n 
C09 C32 X7M sing 480 n n 
C09 C10 X7M sing 481 n n 
C25 C24 X7M sing 482 n n 
C10 S11 X7M sing 483 n n 
S11 C12 X7M sing 484 n n 
C24 C23 X7M sing 485 n n 
C23 N22 X7M sing 486 n n 
N22 C20 X7M sing 487 n n 
C13 C12 X7M sing 488 n n 
C13 C14 X7M sing 489 n n 
C20 C12 X7M sing 490 n n 
C20 O21 X7M doub 491 n n 
C15 C14 X7M doub 492 n y 
C15 C16 X7M sing 493 n y 
C14 C19 X7M sing 494 n y 
C16 C17 X7M doub 495 n y 
C19 C18 X7M doub 496 n y 
C17 C18 X7M sing 497 n y 
C13 H1 X7M sing 498 n n 
C13 H2 X7M sing 499 n n 
C17 H3 X7M sing 500 n n 
C10 H4 X7M sing 501 n n 
C10 H5 X7M sing 502 n n 
C12 H6 X7M sing 503 n n 
C03 H7 X7M sing 504 n n 
C03 H8 X7M sing 505 n n 
C03 H9 X7M sing 506 n n 
C04 H10 X7M sing 507 n n 
C04 H11 X7M sing 508 n n 
C04 H12 X7M sing 509 n n 
C09 H13 X7M sing 510 n n 
C01 H14 X7M sing 511 n n 
C01 H15 X7M sing 512 n n 
C01 H16 X7M sing 513 n n 
C15 H17 X7M sing 514 n n 
C16 H18 X7M sing 515 n n 
C18 H19 X7M sing 516 n n 
C19 H20 X7M sing 517 n n 
C23 H21 X7M sing 518 n n 
C23 H22 X7M sing 519 n n 
C24 H23 X7M sing 520 n n 
C24 H24 X7M sing 521 n n 
C25 H25 X7M sing 522 n n 
C25 H26 X7M sing 523 n n 
C27 H27 X7M sing 524 n n 
C29 H28 X7M sing 525 n n 
C30 H29 X7M sing 526 n n 
C31 H30 X7M sing 527 n n 
C32 H31 X7M sing 528 n n 
C32 H32 X7M sing 529 n n 
C34 H33 X7M sing 530 n n 
C35 H34 X7M sing 531 n n 
C36 H35 X7M sing 532 n n 
C37 H36 X7M sing 533 n n 
C38 H37 X7M sing 534 n n 
N08 H38 X7M sing 535 n n 
N22 H39 X7M sing 536 n n 
#
_atom_sites.entry_id                     7KVJ 
_atom_sites.fract_transf_matrix[1][1]    0.013191 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 X7M A 1 602 700 X7M 111 . 
D 4 HOH A 1 701 2 HOH HOH . 
D 4 HOH A 2 702 4 HOH HOH . 
D 4 HOH A 3 703 1 HOH HOH . 
D 4 HOH A 4 704 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 X7M . . . C 3 -13.226 -31.502 -5.06 1 189.17 ? C13 X7M 602 A 1 
HETATM 2 C C17 X7M . . . C 3 -10.542 -30.691 -1.702 1 211.07 ? C17 X7M 602 A 1 
HETATM 3 C C20 X7M . . . C 3 -15.655 -32.394 -5.007 1 151.31 ? C20 X7M 602 A 1 
HETATM 4 C C10 X7M . . . C 3 -15.147 -35.258 -6.441 1 186.57 ? C10 X7M 602 A 1 
HETATM 5 C C12 X7M . . . C 3 -14.156 -32.737 -4.911 1 189.22 ? C12 X7M 602 A 1 
HETATM 6 C C14 X7M . . . C 3 -12.277 -31.21 -3.901 1 199.44 ? C14 X7M 602 A 1 
HETATM 7 C C02 X7M . . . C 3 -14.869 -37.371 -11.549 1 189.84 ? C02 X7M 602 A 1 
HETATM 8 C C03 X7M . . . C 3 -16.246 -38.055 -11.492 1 177.66 ? C03 X7M 602 A 1 
HETATM 9 C C04 X7M . . . C 3 -15.033 -35.87 -11.753 1 178.47 ? C04 X7M 602 A 1 
HETATM 10 C C06 X7M . . . C 3 -14.2 -36.771 -9.236 1 222.71 ? C06 X7M 602 A 1 
HETATM 11 C C09 X7M . . . C 3 -15.792 -35.275 -7.874 1 191.7 ? C09 X7M 602 A 1 
HETATM 12 C C01 X7M . . . C 3 -14.153 -37.901 -12.814 1 194.21 ? C01 X7M 602 A 1 
HETATM 13 C C15 X7M . . . C 3 -11.026 -30.594 -4.076 1 209.73 ? C15 X7M 602 A 1 
HETATM 14 C C16 X7M . . . C 3 -10.175 -30.339 -2.996 1 214.16 ? C16 X7M 602 A 1 
HETATM 15 C C18 X7M . . . C 3 -11.776 -31.3 -1.51 1 196.76 ? C18 X7M 602 A 1 
HETATM 16 C C19 X7M . . . C 3 -12.616 -31.549 -2.595 1 192.08 ? C19 X7M 602 A 1 
HETATM 17 C C23 X7M . . . C 3 -17.52 -30.839 -5.798 1 98.2 ? C23 X7M 602 A 1 
HETATM 18 C C24 X7M . . . C 3 -17.669 -29.292 -5.958 1 104.73 ? C24 X7M 602 A 1 
HETATM 19 C C25 X7M . . . C 3 -19.039 -28.835 -6.512 1 123.8 ? C25 X7M 602 A 1 
HETATM 20 C C26 X7M . . . C 3 -19.041 -28.409 -7.97 1 96.59 ? C26 X7M 602 A 1 
HETATM 21 C C27 X7M . . . C 3 -20.165 -27.787 -8.549 1 83.66 ? C27 X7M 602 A 1 
HETATM 22 C C29 X7M . . . C 3 -19.192 -27.572 -10.644 1 125.75 ? C29 X7M 602 A 1 
HETATM 23 C C30 X7M . . . C 3 -18.023 -28.18 -10.178 1 119.02 ? C30 X7M 602 A 1 
HETATM 24 C C31 X7M . . . C 3 -17.962 -28.592 -8.842 1 105.63 ? C31 X7M 602 A 1 
HETATM 25 C C32 X7M . . . C 3 -17.345 -35.087 -7.773 1 166.08 ? C32 X7M 602 A 1 
HETATM 26 C C33 X7M . . . C 3 -17.97 -34.115 -8.765 1 147.89 ? C33 X7M 602 A 1 
HETATM 27 C C34 X7M . . . C 3 -18.828 -33.08 -8.37 1 142.46 ? C34 X7M 602 A 1 
HETATM 28 C C35 X7M . . . C 3 -19.393 -32.197 -9.298 1 126.07 ? C35 X7M 602 A 1 
HETATM 29 C C36 X7M . . . C 3 -19.119 -32.319 -10.656 1 132.18 ? C36 X7M 602 A 1 
HETATM 30 C C37 X7M . . . C 3 -18.271 -33.338 -11.066 1 146.34 ? C37 X7M 602 A 1 
HETATM 31 C C38 X7M . . . C 3 -17.714 -34.214 -10.13 1 140.87 ? C38 X7M 602 A 1 
HETATM 32 N N08 X7M . . . C 3 -15.398 -36.549 -8.54 1 219.93 ? N08 X7M 602 A 1 
HETATM 33 N N22 X7M . . . C 3 -16.102 -31.252 -5.659 1 114.89 ? N22 X7M 602 A 1 
HETATM 34 N N28 X7M . . . C 3 -20.257 -27.376 -9.834 1 110.45 ? N28 X7M 602 A 1 
HETATM 35 O O05 X7M . . . C 3 -14.186 -37.641 -10.318 1 212.45 ? O05 X7M 602 A 1 
HETATM 36 O O07 X7M . . . C 3 -13.199 -36.071 -9.06 1 220.89 ? O07 X7M 602 A 1 
HETATM 37 O O21 X7M . . . C 3 -16.509 -33.137 -4.488 1 139.86 ? O21 X7M 602 A 1 
HETATM 38 S S11 X7M . . . C 3 -13.779 -34.009 -6.261 1 197.31 ? S11 X7M 602 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#