data_7KVK
#
_model_server_result.job_id            2jA6xTxoqPEZ-9pBIKBnJw 
_model_server_result.datetime_utc      '2024-11-29 09:19:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kvk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":601}' 
#
_entry.id    7KVK 
#
_exptl.entry_id    7KVK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          142.59 
_cell.angle_gamma         90 
_cell.entry_id            7KVK 
_cell.length_a            152.591 
_cell.length_b            98.501 
_cell.length_c            127.12 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KVK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 D N28 X7J . A X7J 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc3 I FE HEM . B HEM 601 1_555 K N28 X7J . B X7J 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 151 n n 
CHA C4D HEM doub 152 n n 
CHA HHA HEM sing 153 n n 
CHB C4A HEM sing 154 n n 
CHB C1B HEM doub 155 n n 
CHB HHB HEM sing 156 n n 
CHC C4B HEM sing 157 n n 
CHC C1C HEM doub 158 n n 
CHC HHC HEM sing 159 n n 
CHD C4C HEM doub 160 n n 
CHD C1D HEM sing 161 n n 
CHD HHD HEM sing 162 n n 
C1A C2A HEM doub 163 n y 
C1A NA HEM sing 164 n y 
C2A C3A HEM sing 165 n y 
C2A CAA HEM sing 166 n n 
C3A C4A HEM doub 167 n y 
C3A CMA HEM sing 168 n n 
C4A NA HEM sing 169 n y 
CMA HMA HEM sing 170 n n 
CMA HMAA HEM sing 171 n n 
CMA HMAB HEM sing 172 n n 
CAA CBA HEM sing 173 n n 
CAA HAA HEM sing 174 n n 
CAA HAAA HEM sing 175 n n 
CBA CGA HEM sing 176 n n 
CBA HBA HEM sing 177 n n 
CBA HBAA HEM sing 178 n n 
CGA O1A HEM doub 179 n n 
CGA O2A HEM sing 180 n n 
C1B C2B HEM sing 181 n n 
C1B NB HEM sing 182 n n 
C2B C3B HEM doub 183 n n 
C2B CMB HEM sing 184 n n 
C3B C4B HEM sing 185 n n 
C3B CAB HEM sing 186 n n 
C4B NB HEM doub 187 n n 
CMB HMB HEM sing 188 n n 
CMB HMBA HEM sing 189 n n 
CMB HMBB HEM sing 190 n n 
CAB CBB HEM doub 191 n n 
CAB HAB HEM sing 192 n n 
CBB HBB HEM sing 193 n n 
CBB HBBA HEM sing 194 n n 
C1C C2C HEM sing 195 n y 
C1C NC HEM sing 196 n y 
C2C C3C HEM doub 197 n y 
C2C CMC HEM sing 198 n n 
C3C C4C HEM sing 199 n y 
C3C CAC HEM sing 200 n n 
C4C NC HEM sing 201 n y 
CMC HMC HEM sing 202 n n 
CMC HMCA HEM sing 203 n n 
CMC HMCB HEM sing 204 n n 
CAC CBC HEM doub 205 n n 
CAC HAC HEM sing 206 n n 
CBC HBC HEM sing 207 n n 
CBC HBCA HEM sing 208 n n 
C1D C2D HEM sing 209 n n 
C1D ND HEM doub 210 n n 
C2D C3D HEM doub 211 n n 
C2D CMD HEM sing 212 n n 
C3D C4D HEM sing 213 n n 
C3D CAD HEM sing 214 n n 
C4D ND HEM sing 215 n n 
CMD HMD HEM sing 216 n n 
CMD HMDA HEM sing 217 n n 
CMD HMDB HEM sing 218 n n 
CAD CBD HEM sing 219 n n 
CAD HAD HEM sing 220 n n 
CAD HADA HEM sing 221 n n 
CBD CGD HEM sing 222 n n 
CBD HBD HEM sing 223 n n 
CBD HBDA HEM sing 224 n n 
CGD O1D HEM doub 225 n n 
CGD O2D HEM sing 226 n n 
O2A H2A HEM sing 227 n n 
O2D H2D HEM sing 228 n n 
FE NA HEM sing 229 n n 
FE NB HEM sing 230 n n 
FE NC HEM sing 231 n n 
FE ND HEM sing 232 n n 
#
_atom_sites.entry_id                     7KVK 
_atom_sites.fract_transf_matrix[1][1]    0.006553 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008568 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 500 HEM HEM . 
D 3 X7J A 1 602 700 X7J 377 . 
E 4 SO4 A 1 603 600 SO4 SO4 . 
F 5 GOL A 1 604 601 GOL GOL . 
G 5 GOL A 1 605 603 GOL GOL . 
H 6 EDO A 1 606 650 EDO EDO . 
I 2 HEM B 1 601 500 HEM HEM . 
J 4 SO4 B 1 602 600 SO4 SO4 . 
K 3 X7J B 1 603 700 X7J 377 . 
L 7 HOH A 1 701 2 HOH HOH . 
L 7 HOH A 2 702 7 HOH HOH . 
L 7 HOH A 3 703 5 HOH HOH . 
L 7 HOH A 4 704 4 HOH HOH . 
L 7 HOH A 5 705 1 HOH HOH . 
L 7 HOH A 6 706 6 HOH HOH . 
L 7 HOH A 7 707 8 HOH HOH . 
L 7 HOH A 8 708 11 HOH HOH . 
L 7 HOH A 9 709 3 HOH HOH . 
L 7 HOH A 10 710 14 HOH HOH . 
L 7 HOH A 11 711 13 HOH HOH . 
L 7 HOH A 12 712 10 HOH HOH . 
M 7 HOH B 1 701 9 HOH HOH . 
M 7 HOH B 2 702 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . I 2 -21.95 -20.22 51.192 1 70.22 ? CHA HEM 601 B 1 
HETATM 2 C CHB HEM . . . I 2 -25.976 -22.22 49.347 1 78.61 ? CHB HEM 601 B 1 
HETATM 3 C CHC HEM . . . I 2 -24.393 -26.62 50.639 1 86.16 ? CHC HEM 601 B 1 
HETATM 4 C CHD HEM . . . I 2 -20.361 -24.631 52.479 1 77.5 ? CHD HEM 601 B 1 
HETATM 5 C C1A HEM . . . I 2 -23.163 -20.374 50.555 1 68.68 ? C1A HEM 601 B 1 
HETATM 6 C C2A HEM . . . I 2 -23.942 -19.325 49.93 1 73.76 ? C2A HEM 601 B 1 
HETATM 7 C C3A HEM . . . I 2 -25.05 -19.876 49.425 1 83.71 ? C3A HEM 601 B 1 
HETATM 8 C C4A HEM . . . I 2 -25.016 -21.297 49.705 1 81.13 ? C4A HEM 601 B 1 
HETATM 9 C CMA HEM . . . I 2 -26.176 -19.137 48.67 1 65.26 ? CMA HEM 601 B 1 
HETATM 10 C CAA HEM . . . I 2 -23.556 -17.83 49.873 1 74.68 ? CAA HEM 601 B 1 
HETATM 11 C CBA HEM . . . I 2 -23.039 -17.47 48.484 1 86.47 ? CBA HEM 601 B 1 
HETATM 12 C CGA HEM . . . I 2 -22.883 -15.976 48.38 1 89.76 ? CGA HEM 601 B 1 
HETATM 13 O O1A HEM . . . I 2 -22.582 -15.481 47.263 1 82.39 ? O1A HEM 601 B 1 
HETATM 14 O O2A HEM . . . I 2 -23.061 -15.28 49.412 1 71.92 ? O2A HEM 601 B 1 
HETATM 15 C C1B HEM . . . I 2 -25.887 -23.587 49.502 1 68.82 ? C1B HEM 601 B 1 
HETATM 16 C C2B HEM . . . I 2 -26.83 -24.564 48.996 1 68.79 ? C2B HEM 601 B 1 
HETATM 17 C C3B HEM . . . I 2 -26.393 -25.788 49.351 1 89.78 ? C3B HEM 601 B 1 
HETATM 18 C C4B HEM . . . I 2 -25.16 -25.611 50.095 1 86.74 ? C4B HEM 601 B 1 
HETATM 19 C CMB HEM . . . I 2 -28.094 -24.179 48.192 1 69.06 ? CMB HEM 601 B 1 
HETATM 20 C CAB HEM . . . I 2 -27.007 -27.187 49.079 1 97.82 ? CAB HEM 601 B 1 
HETATM 21 C CBB HEM . . . I 2 -28.159 -27.406 48.436 1 101.52 ? CBB HEM 601 B 1 
HETATM 22 C C1C HEM . . . I 2 -23.145 -26.479 51.209 1 84.21 ? C1C HEM 601 B 1 
HETATM 23 C C2C HEM . . . I 2 -22.265 -27.556 51.612 1 98 ? C2C HEM 601 B 1 
HETATM 24 C C3C HEM . . . I 2 -21.149 -27.027 52.12 1 87.41 ? C3C HEM 601 B 1 
HETATM 25 C C4C HEM . . . I 2 -21.277 -25.576 52.061 1 77.25 ? C4C HEM 601 B 1 
HETATM 26 C CMC HEM . . . I 2 -22.567 -29.064 51.477 1 101.35 ? CMC HEM 601 B 1 
HETATM 27 C CAC HEM . . . I 2 -19.969 -27.87 52.663 1 90.3 ? CAC HEM 601 B 1 
HETATM 28 C CBC HEM . . . I 2 -18.866 -27.326 53.187 1 87.06 ? CBC HEM 601 B 1 
HETATM 29 C C1D HEM . . . I 2 -20.453 -23.264 52.32 1 89.07 ? C1D HEM 601 B 1 
HETATM 30 C C2D HEM . . . I 2 -19.507 -22.282 52.811 1 88.97 ? C2D HEM 601 B 1 
HETATM 31 C C3D HEM . . . I 2 -19.943 -21.069 52.459 1 89.16 ? C3D HEM 601 B 1 
HETATM 32 C C4D HEM . . . I 2 -21.183 -21.232 51.728 1 72.38 ? C4D HEM 601 B 1 
HETATM 33 C CMD HEM . . . I 2 -18.221 -22.59 53.607 1 79.03 ? CMD HEM 601 B 1 
HETATM 34 C CAD HEM . . . I 2 -19.252 -19.722 52.767 1 96.36 ? CAD HEM 601 B 1 
HETATM 35 C CBD HEM . . . I 2 -18.121 -19.492 51.77 1 97.17 ? CBD HEM 601 B 1 
HETATM 36 C CGD HEM . . . I 2 -17.491 -18.145 52.011 1 93.12 ? CGD HEM 601 B 1 
HETATM 37 O O1D HEM . . . I 2 -16.471 -17.832 51.345 1 102.86 ? O1D HEM 601 B 1 
HETATM 38 O O2D HEM . . . I 2 -18.007 -17.385 52.87 1 87.13 ? O2D HEM 601 B 1 
HETATM 39 N NA HEM . . . I 2 -23.849 -21.564 50.396 1 69.56 ? NA HEM 601 B 1 
HETATM 40 N NB HEM . . . I 2 -24.883 -24.261 50.167 1 71.3 ? NB HEM 601 B 1 
HETATM 41 N NC HEM . . . I 2 -22.508 -25.287 51.498 1 75.25 ? NC HEM 601 B 1 
HETATM 42 N ND HEM . . . I 2 -21.462 -22.585 51.664 1 73.31 ? ND HEM 601 B 1 
HETATM 43 FE FE HEM . . . I 2 -23.186 -23.423 50.957 1 80.79 ? FE HEM 601 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#