data_7KVK
#
_model_server_result.job_id            2SRkD0cjT1-_uKPEPfTspw 
_model_server_result.datetime_utc      '2024-11-25 20:41:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kvk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    7KVK 
#
_exptl.entry_id    7KVK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              533.725 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2R)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          142.59 
_cell.angle_gamma         90 
_cell.entry_id            7KVK 
_cell.length_a            152.591 
_cell.length_b            98.501 
_cell.length_c            127.12 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KVK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 D N28 X7J . A X7J 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc3 I FE HEM . B HEM 601 1_555 K N28 X7J . B X7J 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
#
_chem_comp.formula           'C31 H39 N3 O3 S' 
_chem_comp.formula_weight    533.725 
_chem_comp.id                X7J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2R)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 X7J sing 484 n n 
C04 C02 X7J sing 485 n n 
C02 C03 X7J sing 486 n n 
C02 O05 X7J sing 487 n n 
O05 C06 X7J sing 488 n n 
O07 C06 X7J doub 489 n n 
C06 N08 X7J sing 490 n n 
N08 C09 X7J sing 491 n n 
C16 C15 X7J doub 492 n y 
C16 C17 X7J sing 493 n y 
C15 C14 X7J sing 494 n y 
C09 C32 X7J sing 495 n n 
C09 C10 X7J sing 496 n n 
C32 C33 X7J sing 497 n n 
C34 C33 X7J doub 498 n y 
C34 C35 X7J sing 499 n y 
C17 C18 X7J doub 500 n y 
C14 C13 X7J sing 501 n n 
C14 C19 X7J doub 502 n y 
C13 C12 X7J sing 503 n n 
C33 C38 X7J sing 504 n y 
C35 C36 X7J doub 505 n y 
C12 S11 X7J sing 506 n n 
C12 C20 X7J sing 507 n n 
S11 C10 X7J sing 508 n n 
C18 C19 X7J sing 509 n y 
C30 C31 X7J doub 510 n y 
C30 C29 X7J sing 511 n y 
C31 C26 X7J sing 512 n y 
C38 C37 X7J doub 513 n y 
C20 N22 X7J sing 514 n n 
C20 O21 X7J doub 515 n n 
C36 C37 X7J sing 516 n y 
N22 C23 X7J sing 517 n n 
C29 N28 X7J doub 518 n y 
C26 C25 X7J sing 519 n n 
C26 C27 X7J doub 520 n y 
C25 C24 X7J sing 521 n n 
C23 C24 X7J sing 522 n n 
N28 C27 X7J sing 523 n y 
C10 H1 X7J sing 524 n n 
C10 H2 X7J sing 525 n n 
C03 H3 X7J sing 526 n n 
C03 H4 X7J sing 527 n n 
C03 H5 X7J sing 528 n n 
C04 H6 X7J sing 529 n n 
C04 H7 X7J sing 530 n n 
C04 H8 X7J sing 531 n n 
C09 H9 X7J sing 532 n n 
C12 H10 X7J sing 533 n n 
C13 H11 X7J sing 534 n n 
C13 H12 X7J sing 535 n n 
C01 H13 X7J sing 536 n n 
C01 H14 X7J sing 537 n n 
C01 H15 X7J sing 538 n n 
C15 H16 X7J sing 539 n n 
C16 H17 X7J sing 540 n n 
C17 H18 X7J sing 541 n n 
C18 H19 X7J sing 542 n n 
C19 H20 X7J sing 543 n n 
C23 H21 X7J sing 544 n n 
C23 H22 X7J sing 545 n n 
C24 H23 X7J sing 546 n n 
C24 H24 X7J sing 547 n n 
C25 H25 X7J sing 548 n n 
C25 H26 X7J sing 549 n n 
C27 H27 X7J sing 550 n n 
C29 H28 X7J sing 551 n n 
C30 H29 X7J sing 552 n n 
C31 H30 X7J sing 553 n n 
C32 H31 X7J sing 554 n n 
C32 H32 X7J sing 555 n n 
C34 H33 X7J sing 556 n n 
C35 H34 X7J sing 557 n n 
C36 H35 X7J sing 558 n n 
C37 H36 X7J sing 559 n n 
C38 H37 X7J sing 560 n n 
N08 H38 X7J sing 561 n n 
N22 H39 X7J sing 562 n n 
#
_atom_sites.entry_id                     7KVK 
_atom_sites.fract_transf_matrix[1][1]    0.006553 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008568 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 500 HEM HEM . 
D 3 X7J A 1 602 700 X7J 377 . 
E 4 SO4 A 1 603 600 SO4 SO4 . 
F 5 GOL A 1 604 601 GOL GOL . 
G 5 GOL A 1 605 603 GOL GOL . 
H 6 EDO A 1 606 650 EDO EDO . 
I 2 HEM B 1 601 500 HEM HEM . 
J 4 SO4 B 1 602 600 SO4 SO4 . 
K 3 X7J B 1 603 700 X7J 377 . 
L 7 HOH A 1 701 2 HOH HOH . 
L 7 HOH A 2 702 7 HOH HOH . 
L 7 HOH A 3 703 5 HOH HOH . 
L 7 HOH A 4 704 4 HOH HOH . 
L 7 HOH A 5 705 1 HOH HOH . 
L 7 HOH A 6 706 6 HOH HOH . 
L 7 HOH A 7 707 8 HOH HOH . 
L 7 HOH A 8 708 11 HOH HOH . 
L 7 HOH A 9 709 3 HOH HOH . 
L 7 HOH A 10 710 14 HOH HOH . 
L 7 HOH A 11 711 13 HOH HOH . 
L 7 HOH A 12 712 10 HOH HOH . 
M 7 HOH B 1 701 9 HOH HOH . 
M 7 HOH B 2 702 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 X7J . . . D 3 -16.613 -33.921 10.163 1 122.93 ? C10 X7J 602 A 1 
HETATM 2 C C02 X7J . . . D 3 -17.344 -32.899 4.488 1 136.3 ? C02 X7J 602 A 1 
HETATM 3 C C03 X7J . . . D 3 -17.469 -31.382 4.729 1 126.93 ? C03 X7J 602 A 1 
HETATM 4 C C04 X7J . . . D 3 -15.913 -33.258 4.122 1 124.6 ? C04 X7J 602 A 1 
HETATM 5 C C06 X7J . . . D 3 -16.855 -34.338 6.453 1 161.95 ? C06 X7J 602 A 1 
HETATM 6 C C09 X7J . . . D 3 -17.341 -33.52 8.825 1 117.91 ? C09 X7J 602 A 1 
HETATM 7 C C12 X7J . . . D 3 -14.294 -31.89 9.962 1 90.93 ? C12 X7J 602 A 1 
HETATM 8 C C13 X7J . . . D 3 -12.784 -31.729 9.66 1 90.82 ? C13 X7J 602 A 1 
HETATM 9 C C01 X7J . . . D 3 -18.21 -33.231 3.248 1 132.99 ? C01 X7J 602 A 1 
HETATM 10 C C14 X7J . . . D 3 -12.266 -30.296 9.568 1 91.86 ? C14 X7J 602 A 1 
HETATM 11 C C15 X7J . . . D 3 -12.736 -29.375 8.617 1 90.13 ? C15 X7J 602 A 1 
HETATM 12 C C16 X7J . . . D 3 -12.245 -28.067 8.556 1 98.37 ? C16 X7J 602 A 1 
HETATM 13 C C17 X7J . . . D 3 -11.271 -27.631 9.447 1 101.14 ? C17 X7J 602 A 1 
HETATM 14 C C18 X7J . . . D 3 -10.798 -28.528 10.396 1 104.44 ? C18 X7J 602 A 1 
HETATM 15 C C19 X7J . . . D 3 -11.295 -29.829 10.446 1 104.76 ? C19 X7J 602 A 1 
HETATM 16 C C20 X7J . . . D 3 -14.726 -31.218 11.278 1 92.02 ? C20 X7J 602 A 1 
HETATM 17 C C23 X7J . . . D 3 -16.183 -29.546 12.554 1 76.26 ? C23 X7J 602 A 1 
HETATM 18 C C24 X7J . . . D 3 -15.364 -28.246 12.849 1 72.87 ? C24 X7J 602 A 1 
HETATM 19 C C25 X7J . . . D 3 -15.984 -26.933 12.3 1 71.89 ? C25 X7J 602 A 1 
HETATM 20 C C26 X7J . . . D 3 -17.488 -26.928 12.046 1 74.5 ? C26 X7J 602 A 1 
HETATM 21 C C27 X7J . . . D 3 -18.399 -26.687 13.093 1 79.64 ? C27 X7J 602 A 1 
HETATM 22 C C29 X7J . . . D 3 -20.281 -26.882 11.75 1 51.53 ? C29 X7J 602 A 1 
HETATM 23 C C30 X7J . . . D 3 -19.474 -27.132 10.636 1 61.8 ? C30 X7J 602 A 1 
HETATM 24 C C31 X7J . . . D 3 -18.082 -27.152 10.798 1 61.03 ? C31 X7J 602 A 1 
HETATM 25 C C32 X7J . . . D 3 -17.761 -32.009 8.858 1 92.14 ? C32 X7J 602 A 1 
HETATM 26 C C33 X7J . . . D 3 -18.977 -31.67 9.701 1 91.12 ? C33 X7J 602 A 1 
HETATM 27 C C34 X7J . . . D 3 -20.268 -31.61 9.164 1 101.31 ? C34 X7J 602 A 1 
HETATM 28 C C35 X7J . . . D 3 -21.377 -31.298 9.953 1 97.48 ? C35 X7J 602 A 1 
HETATM 29 C C36 X7J . . . D 3 -21.235 -31.031 11.309 1 103.33 ? C36 X7J 602 A 1 
HETATM 30 C C37 X7J . . . D 3 -19.963 -31.085 11.861 1 87.25 ? C37 X7J 602 A 1 
HETATM 31 C C38 X7J . . . D 3 -18.862 -31.4 11.062 1 92.18 ? C38 X7J 602 A 1 
HETATM 32 N N08 X7J . . . D 3 -16.433 -33.844 7.691 1 141.3 ? N08 X7J 602 A 1 
HETATM 33 N N22 X7J . . . D 3 -15.715 -30.241 11.325 1 94.16 ? N22 X7J 602 A 1 
HETATM 34 N N28 X7J . . . D 3 -19.746 -26.661 12.972 1 70.69 ? N28 X7J 602 A 1 
HETATM 35 O O05 X7J . . . D 3 -17.732 -33.585 5.682 1 154.31 ? O05 X7J 602 A 1 
HETATM 36 O O07 X7J . . . D 3 -16.771 -35.539 6.18 1 178.69 ? O07 X7J 602 A 1 
HETATM 37 O O21 X7J . . . D 3 -14.174 -31.537 12.349 1 108.18 ? O21 X7J 602 A 1 
HETATM 38 S S11 X7J . . . D 3 -14.765 -33.714 10.097 1 111.31 ? S11 X7J 602 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           38 
#