data_7KVM
#
_model_server_result.job_id            v4P16XBvMZ4-GCLabOHOVQ 
_model_server_result.datetime_utc      '2024-11-04 23:05:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kvm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    7KVM 
#
_exptl.entry_id    7KVM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              547.751 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2S)-1-{[(2R)-2-benzyl-3-oxo-3-{[3-(pyridin-3-yl)propyl]amino}propyl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KVM 
_cell.length_a            77.65 
_cell.length_b            101.2 
_cell.length_c            129.26 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KVM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.65 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N29 X71 . A X71 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
#
_chem_comp.formula           'C32 H41 N3 O3 S' 
_chem_comp.formula_weight    547.751 
_chem_comp.id                X71 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2S)-1-{[(2R)-2-benzyl-3-oxo-3-{[3-(pyridin-3-yl)propyl]amino}propyl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C36 C37 X71 doub 456 n y 
C36 C35 X71 sing 457 n y 
C01 C02 X71 sing 458 n n 
C31 C30 X71 doub 459 n y 
C31 C32 X71 sing 460 n y 
C30 N29 X71 sing 461 n y 
C03 C02 X71 sing 462 n n 
C37 C38 X71 sing 463 n y 
C35 C34 X71 doub 464 n y 
C02 C04 X71 sing 465 n n 
C02 O05 X71 sing 466 n n 
C32 C27 X71 doub 467 n y 
O07 C06 X71 doub 468 n n 
N29 C28 X71 doub 469 n y 
C38 C39 X71 doub 470 n y 
C06 O05 X71 sing 471 n n 
C06 N08 X71 sing 472 n n 
C34 C39 X71 sing 473 n y 
C34 C33 X71 sing 474 n n 
C27 C28 X71 sing 475 n y 
C27 C26 X71 sing 476 n n 
C09 N08 X71 sing 477 n n 
C09 C33 X71 sing 478 n n 
C09 C10 X71 sing 479 n n 
C10 S11 X71 sing 480 n n 
C26 C25 X71 sing 481 n n 
C24 C25 X71 sing 482 n n 
C24 N23 X71 sing 483 n n 
S11 C12 X71 sing 484 n n 
C17 C16 X71 doub 485 n y 
C17 C18 X71 sing 486 n y 
C16 C15 X71 sing 487 n y 
N23 C21 X71 sing 488 n n 
C13 C12 X71 sing 489 n n 
C13 C21 X71 sing 490 n n 
C13 C14 X71 sing 491 n n 
C18 C19 X71 doub 492 n y 
C21 O22 X71 doub 493 n n 
C15 C14 X71 sing 494 n n 
C15 C20 X71 doub 495 n y 
C19 C20 X71 sing 496 n y 
C14 H1 X71 sing 497 n n 
C14 H2 X71 sing 498 n n 
C17 H3 X71 sing 499 n n 
C20 H4 X71 sing 500 n n 
C19 H5 X71 sing 501 n n 
C18 H6 X71 sing 502 n n 
C16 H7 X71 sing 503 n n 
C13 H8 X71 sing 504 n n 
C12 H9 X71 sing 505 n n 
C12 H10 X71 sing 506 n n 
C10 H11 X71 sing 507 n n 
C10 H12 X71 sing 508 n n 
C01 H13 X71 sing 509 n n 
C01 H14 X71 sing 510 n n 
C01 H15 X71 sing 511 n n 
C03 H16 X71 sing 512 n n 
C03 H17 X71 sing 513 n n 
C03 H18 X71 sing 514 n n 
C04 H19 X71 sing 515 n n 
C04 H20 X71 sing 516 n n 
C04 H21 X71 sing 517 n n 
C09 H22 X71 sing 518 n n 
C24 H23 X71 sing 519 n n 
C24 H24 X71 sing 520 n n 
C25 H25 X71 sing 521 n n 
C25 H26 X71 sing 522 n n 
C26 H27 X71 sing 523 n n 
C26 H28 X71 sing 524 n n 
C28 H29 X71 sing 525 n n 
C30 H30 X71 sing 526 n n 
C31 H31 X71 sing 527 n n 
C32 H32 X71 sing 528 n n 
C33 H33 X71 sing 529 n n 
C33 H34 X71 sing 530 n n 
C35 H35 X71 sing 531 n n 
C36 H36 X71 sing 532 n n 
C37 H37 X71 sing 533 n n 
C38 H38 X71 sing 534 n n 
C39 H39 X71 sing 535 n n 
N08 H40 X71 sing 536 n n 
N23 H41 X71 sing 537 n n 
#
_atom_sites.entry_id                     7KVM 
_atom_sites.fract_transf_matrix[1][1]    0.012878 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007736 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 X71 A 1 602 700 X71 390 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 X71 . . . C 3 -24.778 -19.947 -5.536 1 165.73 ? C14 X71 602 A 1 
HETATM 2 C C15 X71 . . . C 3 -26.175 -20.534 -5.785 1 170.47 ? C15 X71 602 A 1 
HETATM 3 C C17 X71 . . . C 3 -28.354 -20.559 -6.902 1 180.82 ? C17 X71 602 A 1 
HETATM 4 C C21 X71 . . . C 3 -22.814 -18.29 -5.802 1 153.2 ? C21 X71 602 A 1 
HETATM 5 C C20 X71 . . . C 3 -26.595 -21.657 -5.07 1 186.98 ? C20 X71 602 A 1 
HETATM 6 C C19 X71 . . . C 3 -27.856 -22.222 -5.255 1 192.07 ? C19 X71 602 A 1 
HETATM 7 C C18 X71 . . . C 3 -28.744 -21.678 -6.171 1 186.53 ? C18 X71 602 A 1 
HETATM 8 C C16 X71 . . . C 3 -27.085 -19.996 -6.714 1 170.57 ? C16 X71 602 A 1 
HETATM 9 C C13 X71 . . . C 3 -24.236 -18.639 -6.272 1 162.92 ? C13 X71 602 A 1 
HETATM 10 C C12 X71 . . . C 3 -25.162 -17.408 -6.17 1 183.01 ? C12 X71 602 A 1 
HETATM 11 C C10 X71 . . . C 3 -23.633 -16.731 -8.839 1 167.96 ? C10 X71 602 A 1 
HETATM 12 C C01 X71 . . . C 3 -25.107 -12.647 -11.906 1 171.82 ? C01 X71 602 A 1 
HETATM 13 C C02 X71 . . . C 3 -24.722 -11.577 -10.881 1 173.46 ? C02 X71 602 A 1 
HETATM 14 C C03 X71 . . . C 3 -23.827 -10.516 -11.507 1 173.68 ? C03 X71 602 A 1 
HETATM 15 C C04 X71 . . . C 3 -26.024 -10.861 -10.447 1 161.96 ? C04 X71 602 A 1 
HETATM 16 C C06 X71 . . . C 3 -23.111 -13.16 -9.855 1 189.93 ? C06 X71 602 A 1 
HETATM 17 C C09 X71 . . . C 3 -22.667 -15.606 -9.357 1 157.85 ? C09 X71 602 A 1 
HETATM 18 C C24 X71 . . . C 3 -21.568 -19.536 -7.632 1 124.25 ? C24 X71 602 A 1 
HETATM 19 C C25 X71 . . . C 3 -20.493 -20.628 -7.547 1 98.15 ? C25 X71 602 A 1 
HETATM 20 C C26 X71 . . . C 3 -20.801 -21.962 -8.243 1 96.91 ? C26 X71 602 A 1 
HETATM 21 C C27 X71 . . . C 3 -20.036 -22.2 -9.499 1 95.49 ? C27 X71 602 A 1 
HETATM 22 C C28 X71 . . . C 3 -18.696 -22.615 -9.447 1 81.54 ? C28 X71 602 A 1 
HETATM 23 C C30 X71 . . . C 3 -18.493 -22.658 -11.74 1 126.68 ? C30 X71 602 A 1 
HETATM 24 C C31 X71 . . . C 3 -19.815 -22.241 -11.899 1 139.65 ? C31 X71 602 A 1 
HETATM 25 C C32 X71 . . . C 3 -20.582 -22.012 -10.762 1 117.28 ? C32 X71 602 A 1 
HETATM 26 C C33 X71 . . . C 3 -21.213 -15.912 -8.852 1 138.38 ? C33 X71 602 A 1 
HETATM 27 C C34 X71 . . . C 3 -20.41 -16.835 -9.743 1 123.56 ? C34 X71 602 A 1 
HETATM 28 C C35 X71 . . . C 3 -20.705 -16.93 -11.106 1 124.06 ? C35 X71 602 A 1 
HETATM 29 C C36 X71 . . . C 3 -19.98 -17.776 -11.949 1 121.89 ? C36 X71 602 A 1 
HETATM 30 C C37 X71 . . . C 3 -18.939 -18.546 -11.441 1 121.23 ? C37 X71 602 A 1 
HETATM 31 C C38 X71 . . . C 3 -18.638 -18.457 -10.085 1 122.65 ? C38 X71 602 A 1 
HETATM 32 C C39 X71 . . . C 3 -19.362 -17.607 -9.254 1 118.51 ? C39 X71 602 A 1 
HETATM 33 N N08 X71 . . . C 3 -23.08 -14.228 -8.918 1 175.82 ? N08 X71 602 A 1 
HETATM 34 N N23 X71 . . . C 3 -21.645 -18.708 -6.391 1 138.38 ? N23 X71 602 A 1 
HETATM 35 N N29 X71 . . . C 3 -17.93 -22.846 -10.526 1 94.47 ? N29 X71 602 A 1 
HETATM 36 O O05 X71 . . . C 3 -24.118 -12.207 -9.706 1 195.75 ? O05 X71 602 A 1 
HETATM 37 O O07 X71 . . . C 3 -22.276 -13.087 -10.744 1 193.78 ? O07 X71 602 A 1 
HETATM 38 O O22 X71 . . . C 3 -22.684 -17.553 -4.786 1 171.17 ? O22 X71 602 A 1 
HETATM 39 S S11 X71 . . . C 3 -24.844 -16.131 -7.524 1 188.34 ? S11 X71 602 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#