data_7KVM # _model_server_result.job_id MBJ2V2oqtJq4u4wVZu7kOA _model_server_result.datetime_utc '2024-11-25 21:26:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7KVM # _exptl.entry_id 7KVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.751 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2S)-1-{[(2R)-2-benzyl-3-oxo-3-{[3-(pyridin-3-yl)propyl]amino}propyl]sulfanyl}-3-phenylpropan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KVM _cell.length_a 77.65 _cell.length_b 101.2 _cell.length_c 129.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.65 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N29 X71 . A X71 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'C32 H41 N3 O3 S' _chem_comp.formula_weight 547.751 _chem_comp.id X71 _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2S)-1-{[(2R)-2-benzyl-3-oxo-3-{[3-(pyridin-3-yl)propyl]amino}propyl]sulfanyl}-3-phenylpropan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C36 C37 X71 doub 456 n y C36 C35 X71 sing 457 n y C01 C02 X71 sing 458 n n C31 C30 X71 doub 459 n y C31 C32 X71 sing 460 n y C30 N29 X71 sing 461 n y C03 C02 X71 sing 462 n n C37 C38 X71 sing 463 n y C35 C34 X71 doub 464 n y C02 C04 X71 sing 465 n n C02 O05 X71 sing 466 n n C32 C27 X71 doub 467 n y O07 C06 X71 doub 468 n n N29 C28 X71 doub 469 n y C38 C39 X71 doub 470 n y C06 O05 X71 sing 471 n n C06 N08 X71 sing 472 n n C34 C39 X71 sing 473 n y C34 C33 X71 sing 474 n n C27 C28 X71 sing 475 n y C27 C26 X71 sing 476 n n C09 N08 X71 sing 477 n n C09 C33 X71 sing 478 n n C09 C10 X71 sing 479 n n C10 S11 X71 sing 480 n n C26 C25 X71 sing 481 n n C24 C25 X71 sing 482 n n C24 N23 X71 sing 483 n n S11 C12 X71 sing 484 n n C17 C16 X71 doub 485 n y C17 C18 X71 sing 486 n y C16 C15 X71 sing 487 n y N23 C21 X71 sing 488 n n C13 C12 X71 sing 489 n n C13 C21 X71 sing 490 n n C13 C14 X71 sing 491 n n C18 C19 X71 doub 492 n y C21 O22 X71 doub 493 n n C15 C14 X71 sing 494 n n C15 C20 X71 doub 495 n y C19 C20 X71 sing 496 n y C14 H1 X71 sing 497 n n C14 H2 X71 sing 498 n n C17 H3 X71 sing 499 n n C20 H4 X71 sing 500 n n C19 H5 X71 sing 501 n n C18 H6 X71 sing 502 n n C16 H7 X71 sing 503 n n C13 H8 X71 sing 504 n n C12 H9 X71 sing 505 n n C12 H10 X71 sing 506 n n C10 H11 X71 sing 507 n n C10 H12 X71 sing 508 n n C01 H13 X71 sing 509 n n C01 H14 X71 sing 510 n n C01 H15 X71 sing 511 n n C03 H16 X71 sing 512 n n C03 H17 X71 sing 513 n n C03 H18 X71 sing 514 n n C04 H19 X71 sing 515 n n C04 H20 X71 sing 516 n n C04 H21 X71 sing 517 n n C09 H22 X71 sing 518 n n C24 H23 X71 sing 519 n n C24 H24 X71 sing 520 n n C25 H25 X71 sing 521 n n C25 H26 X71 sing 522 n n C26 H27 X71 sing 523 n n C26 H28 X71 sing 524 n n C28 H29 X71 sing 525 n n C30 H30 X71 sing 526 n n C31 H31 X71 sing 527 n n C32 H32 X71 sing 528 n n C33 H33 X71 sing 529 n n C33 H34 X71 sing 530 n n C35 H35 X71 sing 531 n n C36 H36 X71 sing 532 n n C37 H37 X71 sing 533 n n C38 H38 X71 sing 534 n n C39 H39 X71 sing 535 n n N08 H40 X71 sing 536 n n N23 H41 X71 sing 537 n n # _atom_sites.entry_id 7KVM _atom_sites.fract_transf_matrix[1][1] 0.012878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 X71 A 1 602 700 X71 390 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 X71 . . . C 3 -24.778 -19.947 -5.536 1 165.73 ? C14 X71 602 A 1 HETATM 2 C C15 X71 . . . C 3 -26.175 -20.534 -5.785 1 170.47 ? C15 X71 602 A 1 HETATM 3 C C17 X71 . . . C 3 -28.354 -20.559 -6.902 1 180.82 ? C17 X71 602 A 1 HETATM 4 C C21 X71 . . . C 3 -22.814 -18.29 -5.802 1 153.2 ? C21 X71 602 A 1 HETATM 5 C C20 X71 . . . C 3 -26.595 -21.657 -5.07 1 186.98 ? C20 X71 602 A 1 HETATM 6 C C19 X71 . . . C 3 -27.856 -22.222 -5.255 1 192.07 ? C19 X71 602 A 1 HETATM 7 C C18 X71 . . . C 3 -28.744 -21.678 -6.171 1 186.53 ? C18 X71 602 A 1 HETATM 8 C C16 X71 . . . C 3 -27.085 -19.996 -6.714 1 170.57 ? C16 X71 602 A 1 HETATM 9 C C13 X71 . . . C 3 -24.236 -18.639 -6.272 1 162.92 ? C13 X71 602 A 1 HETATM 10 C C12 X71 . . . C 3 -25.162 -17.408 -6.17 1 183.01 ? C12 X71 602 A 1 HETATM 11 C C10 X71 . . . C 3 -23.633 -16.731 -8.839 1 167.96 ? C10 X71 602 A 1 HETATM 12 C C01 X71 . . . C 3 -25.107 -12.647 -11.906 1 171.82 ? C01 X71 602 A 1 HETATM 13 C C02 X71 . . . C 3 -24.722 -11.577 -10.881 1 173.46 ? C02 X71 602 A 1 HETATM 14 C C03 X71 . . . C 3 -23.827 -10.516 -11.507 1 173.68 ? C03 X71 602 A 1 HETATM 15 C C04 X71 . . . C 3 -26.024 -10.861 -10.447 1 161.96 ? C04 X71 602 A 1 HETATM 16 C C06 X71 . . . C 3 -23.111 -13.16 -9.855 1 189.93 ? C06 X71 602 A 1 HETATM 17 C C09 X71 . . . C 3 -22.667 -15.606 -9.357 1 157.85 ? C09 X71 602 A 1 HETATM 18 C C24 X71 . . . C 3 -21.568 -19.536 -7.632 1 124.25 ? C24 X71 602 A 1 HETATM 19 C C25 X71 . . . C 3 -20.493 -20.628 -7.547 1 98.15 ? C25 X71 602 A 1 HETATM 20 C C26 X71 . . . C 3 -20.801 -21.962 -8.243 1 96.91 ? C26 X71 602 A 1 HETATM 21 C C27 X71 . . . C 3 -20.036 -22.2 -9.499 1 95.49 ? C27 X71 602 A 1 HETATM 22 C C28 X71 . . . C 3 -18.696 -22.615 -9.447 1 81.54 ? C28 X71 602 A 1 HETATM 23 C C30 X71 . . . C 3 -18.493 -22.658 -11.74 1 126.68 ? C30 X71 602 A 1 HETATM 24 C C31 X71 . . . C 3 -19.815 -22.241 -11.899 1 139.65 ? C31 X71 602 A 1 HETATM 25 C C32 X71 . . . C 3 -20.582 -22.012 -10.762 1 117.28 ? C32 X71 602 A 1 HETATM 26 C C33 X71 . . . C 3 -21.213 -15.912 -8.852 1 138.38 ? C33 X71 602 A 1 HETATM 27 C C34 X71 . . . C 3 -20.41 -16.835 -9.743 1 123.56 ? C34 X71 602 A 1 HETATM 28 C C35 X71 . . . C 3 -20.705 -16.93 -11.106 1 124.06 ? C35 X71 602 A 1 HETATM 29 C C36 X71 . . . C 3 -19.98 -17.776 -11.949 1 121.89 ? C36 X71 602 A 1 HETATM 30 C C37 X71 . . . C 3 -18.939 -18.546 -11.441 1 121.23 ? C37 X71 602 A 1 HETATM 31 C C38 X71 . . . C 3 -18.638 -18.457 -10.085 1 122.65 ? C38 X71 602 A 1 HETATM 32 C C39 X71 . . . C 3 -19.362 -17.607 -9.254 1 118.51 ? C39 X71 602 A 1 HETATM 33 N N08 X71 . . . C 3 -23.08 -14.228 -8.918 1 175.82 ? N08 X71 602 A 1 HETATM 34 N N23 X71 . . . C 3 -21.645 -18.708 -6.391 1 138.38 ? N23 X71 602 A 1 HETATM 35 N N29 X71 . . . C 3 -17.93 -22.846 -10.526 1 94.47 ? N29 X71 602 A 1 HETATM 36 O O05 X71 . . . C 3 -24.118 -12.207 -9.706 1 195.75 ? O05 X71 602 A 1 HETATM 37 O O07 X71 . . . C 3 -22.276 -13.087 -10.744 1 193.78 ? O07 X71 602 A 1 HETATM 38 O O22 X71 . . . C 3 -22.684 -17.553 -4.786 1 171.17 ? O22 X71 602 A 1 HETATM 39 S S11 X71 . . . C 3 -24.844 -16.131 -7.524 1 188.34 ? S11 X71 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 39 #