data_7KVN # _model_server_result.job_id 2_bW1EtWo2TtKJi_X_7aOQ _model_server_result.datetime_utc '2024-11-21 17:57:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7KVN # _exptl.entry_id 7KVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 572.761 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2S)-1-(1H-indol-3-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.21 _cell.angle_gamma 90 _cell.entry_id 7KVN _cell.length_a 153.761 _cell.length_b 95.61 _cell.length_c 93.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 D N30 X6V . A X6V 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 E FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 E FE HEM . B HEM 601 1_555 F N30 X6V . B X6V 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? # _chem_comp.formula 'C33 H40 N4 O3 S' _chem_comp.formula_weight 572.761 _chem_comp.id X6V _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2S)-1-(1H-indol-3-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 C02 X6V sing 458 n n C01 C02 X6V sing 459 n n C04 C02 X6V sing 460 n n C02 O05 X6V sing 461 n n O05 C06 X6V sing 462 n n O07 C06 X6V doub 463 n n C06 N08 X6V sing 464 n n C18 C19 X6V doub 465 n y C18 C17 X6V sing 466 n y C19 C14 X6V sing 467 n y C17 C16 X6V doub 468 n y N08 C09 X6V sing 469 n n C34 N35 X6V sing 470 n y C34 C33 X6V doub 471 n y N35 C36 X6V sing 472 n y C14 C13 X6V sing 473 n n C14 C15 X6V doub 474 n y C16 C15 X6V sing 475 n y C33 C32 X6V sing 476 n n C33 C37 X6V sing 477 n y C13 C12 X6V sing 478 n n C36 C41 X6V doub 479 n y C36 C37 X6V sing 480 n y C09 C32 X6V sing 481 n n C09 C10 X6V sing 482 n n C41 C40 X6V sing 483 n y C37 C38 X6V doub 484 n y C12 S11 X6V sing 485 n n C12 C20 X6V sing 486 n n C28 C27 X6V doub 487 n y C28 C29 X6V sing 488 n y C10 S11 X6V sing 489 n n C27 C26 X6V sing 490 n y C40 C39 X6V doub 491 n y N22 C20 X6V sing 492 n n N22 C23 X6V sing 493 n n C20 O21 X6V doub 494 n n C38 C39 X6V sing 495 n y C29 N30 X6V doub 496 n y C24 C25 X6V sing 497 n n C24 C23 X6V sing 498 n n C26 C25 X6V sing 499 n n C26 C31 X6V doub 500 n y N30 C31 X6V sing 501 n y C12 H1 X6V sing 502 n n C13 H2 X6V sing 503 n n C13 H3 X6V sing 504 n n C15 H4 X6V sing 505 n n C16 H5 X6V sing 506 n n C17 H6 X6V sing 507 n n C18 H7 X6V sing 508 n n C01 H8 X6V sing 509 n n C01 H9 X6V sing 510 n n C01 H10 X6V sing 511 n n C03 H11 X6V sing 512 n n C03 H12 X6V sing 513 n n C03 H13 X6V sing 514 n n C04 H14 X6V sing 515 n n C04 H15 X6V sing 516 n n C04 H16 X6V sing 517 n n C09 H17 X6V sing 518 n n C10 H18 X6V sing 519 n n C10 H19 X6V sing 520 n n C19 H20 X6V sing 521 n n C23 H21 X6V sing 522 n n C23 H22 X6V sing 523 n n C24 H23 X6V sing 524 n n C24 H24 X6V sing 525 n n C25 H25 X6V sing 526 n n C25 H26 X6V sing 527 n n C27 H27 X6V sing 528 n n C28 H28 X6V sing 529 n n C29 H29 X6V sing 530 n n C31 H30 X6V sing 531 n n C32 H31 X6V sing 532 n n C32 H32 X6V sing 533 n n C34 H33 X6V sing 534 n n C38 H34 X6V sing 535 n n C39 H35 X6V sing 536 n n C40 H36 X6V sing 537 n n C41 H37 X6V sing 538 n n N08 H38 X6V sing 539 n n N22 H39 X6V sing 540 n n N35 H40 X6V sing 541 n n # _atom_sites.entry_id 7KVN _atom_sites.fract_transf_matrix[1][1] 0.006504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004422 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 500 HEM HEM . D 3 X6V A 1 602 700 X6V 397 . E 2 HEM B 1 601 500 HEM HEM . F 3 X6V B 1 602 700 X6V 397 . G 4 HOH A 1 701 32 HOH HOH . G 4 HOH A 2 702 12 HOH HOH . G 4 HOH A 3 703 26 HOH HOH . G 4 HOH A 4 704 41 HOH HOH . G 4 HOH A 5 705 9 HOH HOH . G 4 HOH A 6 706 35 HOH HOH . G 4 HOH A 7 707 23 HOH HOH . G 4 HOH A 8 708 54 HOH HOH . G 4 HOH A 9 709 43 HOH HOH . G 4 HOH A 10 710 37 HOH HOH . G 4 HOH A 11 711 46 HOH HOH . G 4 HOH A 12 712 29 HOH HOH . G 4 HOH A 13 713 51 HOH HOH . G 4 HOH A 14 714 20 HOH HOH . G 4 HOH A 15 715 27 HOH HOH . G 4 HOH A 16 716 15 HOH HOH . G 4 HOH A 17 717 53 HOH HOH . G 4 HOH A 18 718 16 HOH HOH . G 4 HOH A 19 719 30 HOH HOH . G 4 HOH A 20 720 14 HOH HOH . G 4 HOH A 21 721 5 HOH HOH . G 4 HOH A 22 722 31 HOH HOH . G 4 HOH A 23 723 25 HOH HOH . G 4 HOH A 24 724 8 HOH HOH . G 4 HOH A 25 725 38 HOH HOH . G 4 HOH A 26 726 52 HOH HOH . G 4 HOH A 27 727 36 HOH HOH . G 4 HOH A 28 728 24 HOH HOH . G 4 HOH A 29 729 48 HOH HOH . G 4 HOH A 30 730 21 HOH HOH . G 4 HOH A 31 731 3 HOH HOH . G 4 HOH A 32 732 19 HOH HOH . G 4 HOH A 33 733 44 HOH HOH . G 4 HOH A 34 734 2 HOH HOH . G 4 HOH A 35 735 4 HOH HOH . G 4 HOH A 36 736 50 HOH HOH . G 4 HOH A 37 737 47 HOH HOH . G 4 HOH A 38 738 45 HOH HOH . G 4 HOH A 39 739 49 HOH HOH . H 4 HOH B 1 701 57 HOH HOH . H 4 HOH B 2 702 33 HOH HOH . H 4 HOH B 3 703 61 HOH HOH . H 4 HOH B 4 704 58 HOH HOH . H 4 HOH B 5 705 59 HOH HOH . H 4 HOH B 6 706 6 HOH HOH . H 4 HOH B 7 707 10 HOH HOH . H 4 HOH B 8 708 17 HOH HOH . H 4 HOH B 9 709 60 HOH HOH . H 4 HOH B 10 710 62 HOH HOH . H 4 HOH B 11 711 40 HOH HOH . H 4 HOH B 12 712 39 HOH HOH . H 4 HOH B 13 713 42 HOH HOH . H 4 HOH B 14 714 18 HOH HOH . H 4 HOH B 15 715 11 HOH HOH . H 4 HOH B 16 716 13 HOH HOH . H 4 HOH B 17 717 55 HOH HOH . H 4 HOH B 18 718 28 HOH HOH . H 4 HOH B 19 719 22 HOH HOH . H 4 HOH B 20 720 56 HOH HOH . H 4 HOH B 21 721 1 HOH HOH . H 4 HOH B 22 722 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 X6V . . . D 3 14.252 -18.091 10.66 1 57.25 ? C12 X6V 602 A 1 HETATM 2 C C13 X6V . . . D 3 13.025 -18.552 9.828 1 45.61 ? C13 X6V 602 A 1 HETATM 3 C C14 X6V . . . D 3 13.048 -19.994 9.292 1 46.77 ? C14 X6V 602 A 1 HETATM 4 C C15 X6V . . . D 3 12.343 -21.03 9.93 1 46.58 ? C15 X6V 602 A 1 HETATM 5 C C16 X6V . . . D 3 12.366 -22.354 9.449 1 65.35 ? C16 X6V 602 A 1 HETATM 6 C C17 X6V . . . D 3 13.108 -22.672 8.306 1 80.21 ? C17 X6V 602 A 1 HETATM 7 C C18 X6V . . . D 3 13.82 -21.654 7.665 1 80.55 ? C18 X6V 602 A 1 HETATM 8 C C01 X6V . . . D 3 16.819 -18.278 4.539 1 79.75 ? C01 X6V 602 A 1 HETATM 9 C C02 X6V . . . D 3 16.866 -16.814 5.063 1 79.22 ? C02 X6V 602 A 1 HETATM 10 C C03 X6V . . . D 3 18.099 -16.139 4.424 1 68.27 ? C03 X6V 602 A 1 HETATM 11 C C04 X6V . . . D 3 15.566 -16.105 4.664 1 89.65 ? C04 X6V 602 A 1 HETATM 12 C C06 X6V . . . D 3 16.565 -15.744 7.296 1 89.89 ? C06 X6V 602 A 1 HETATM 13 C C09 X6V . . . D 3 16.202 -15.725 9.867 1 50.55 ? C09 X6V 602 A 1 HETATM 14 C C10 X6V . . . D 3 15.069 -15.13 10.807 1 57.45 ? C10 X6V 602 A 1 HETATM 15 C C19 X6V . . . D 3 13.787 -20.339 8.158 1 66.01 ? C19 X6V 602 A 1 HETATM 16 C C20 X6V . . . D 3 14.776 -19.115 11.667 1 53.96 ? C20 X6V 602 A 1 HETATM 17 C C23 X6V . . . D 3 16.39 -20.906 12.47 1 53.28 ? C23 X6V 602 A 1 HETATM 18 C C24 X6V . . . D 3 15.735 -22.26 12.063 1 45.51 ? C24 X6V 602 A 1 HETATM 19 C C25 X6V . . . D 3 16.536 -23.538 12.395 1 48.65 ? C25 X6V 602 A 1 HETATM 20 C C26 X6V . . . D 3 18.04 -23.486 12.163 1 53.36 ? C26 X6V 602 A 1 HETATM 21 C C27 X6V . . . D 3 18.609 -23.215 10.907 1 50.11 ? C27 X6V 602 A 1 HETATM 22 C C28 X6V . . . D 3 20.01 -23.172 10.746 1 40.99 ? C28 X6V 602 A 1 HETATM 23 C C29 X6V . . . D 3 20.83 -23.404 11.866 1 63.14 ? C29 X6V 602 A 1 HETATM 24 C C31 X6V . . . D 3 18.947 -23.701 13.218 1 57.46 ? C31 X6V 602 A 1 HETATM 25 C C32 X6V . . . D 3 17.556 -14.927 10.015 1 57.62 ? C32 X6V 602 A 1 HETATM 26 C C33 X6V . . . D 3 18.807 -15.671 9.763 1 68 ? C33 X6V 602 A 1 HETATM 27 C C34 X6V . . . D 3 19.583 -15.528 8.573 1 92.71 ? C34 X6V 602 A 1 HETATM 28 C C36 X6V . . . D 3 20.671 -17.047 9.841 1 69.73 ? C36 X6V 602 A 1 HETATM 29 C C37 X6V . . . D 3 19.557 -16.656 10.531 1 61.76 ? C37 X6V 602 A 1 HETATM 30 C C38 X6V . . . D 3 19.247 -17.179 11.802 1 51.71 ? C38 X6V 602 A 1 HETATM 31 C C39 X6V . . . D 3 20.147 -18.127 12.323 1 53.98 ? C39 X6V 602 A 1 HETATM 32 C C40 X6V . . . D 3 21.28 -18.526 11.624 1 48.48 ? C40 X6V 602 A 1 HETATM 33 C C41 X6V . . . D 3 21.59 -18.01 10.365 1 58.25 ? C41 X6V 602 A 1 HETATM 34 N N08 X6V . . . D 3 15.74 -15.835 8.44 1 80.07 ? N08 X6V 602 A 1 HETATM 35 N N22 X6V . . . D 3 16.029 -19.745 11.64 1 64.94 ? N22 X6V 602 A 1 HETATM 36 N N30 X6V . . . D 3 20.294 -23.664 13.08 1 67.48 ? N30 X6V 602 A 1 HETATM 37 N N35 X6V . . . D 3 20.689 -16.38 8.678 1 86.75 ? N35 X6V 602 A 1 HETATM 38 O O05 X6V . . . D 3 16.914 -16.84 6.516 1 88.95 ? O05 X6V 602 A 1 HETATM 39 O O07 X6V . . . D 3 17.031 -14.633 6.95 1 98.76 ? O07 X6V 602 A 1 HETATM 40 O O21 X6V . . . D 3 14.013 -19.453 12.607 1 56.87 ? O21 X6V 602 A 1 HETATM 41 S S11 X6V . . . D 3 13.975 -16.456 11.512 1 67.85 ? S11 X6V 602 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #