data_7KVO
#
_model_server_result.job_id            LelsH4WEFVe0DdJ7WRVFUA 
_model_server_result.datetime_utc      '2024-11-25 09:36:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kvo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    7KVO 
#
_exptl.entry_id    7KVO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.98 
_cell.angle_gamma         90 
_cell.entry_id            7KVO 
_cell.length_a            92.882 
_cell.length_b            98.084 
_cell.length_c            126.772 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KVO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 E N30 X6S . A X6S 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc4 F FE HEM . B HEM 601 1_555 G N30 X6S . B X6S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     7KVO 
_atom_sites.fract_transf_matrix[1][1]    0.010766 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000561 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010195 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007899 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 500 HEM HEM . 
D 3 SO4 A 1 602 600 SO4 SO4 . 
E 4 X6S A 1 603 700 X6S 383 . 
F 2 HEM B 1 601 500 HEM HEM . 
G 4 X6S B 1 602 700 X6S 383 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 2 -26.549 -29.703 -17.073 1 75.66 ? CHA HEM 601 B 1 
HETATM 2 C CHB HEM . . . F 2 -22.956 -27.818 -14.387 1 93.4 ? CHB HEM 601 B 1 
HETATM 3 C CHC HEM . . . F 2 -24.952 -23.435 -14.901 1 98.67 ? CHC HEM 601 B 1 
HETATM 4 C CHD HEM . . . F 2 -28.782 -25.392 -17.151 1 98.2 ? CHD HEM 601 B 1 
HETATM 5 C C1A HEM . . . F 2 -25.409 -29.582 -16.303 1 80.42 ? C1A HEM 601 B 1 
HETATM 6 C C2A HEM . . . F 2 -24.517 -30.66 -15.918 1 79.89 ? C2A HEM 601 B 1 
HETATM 7 C C3A HEM . . . F 2 -23.534 -30.138 -15.176 1 87.76 ? C3A HEM 601 B 1 
HETATM 8 C C4A HEM . . . F 2 -23.755 -28.712 -15.069 1 89.66 ? C4A HEM 601 B 1 
HETATM 9 C CMA HEM . . . F 2 -22.351 -30.896 -14.539 1 72.87 ? CMA HEM 601 B 1 
HETATM 10 C CAA HEM . . . F 2 -24.695 -32.15 -16.285 1 81.67 ? CAA HEM 601 B 1 
HETATM 11 C CBA HEM . . . F 2 -23.672 -32.61 -17.318 1 95.37 ? CBA HEM 601 B 1 
HETATM 12 C CGA HEM . . . F 2 -23.73 -34.112 -17.418 1 117.98 ? CGA HEM 601 B 1 
HETATM 13 O O1A HEM . . . F 2 -22.941 -34.691 -18.206 1 142.07 ? O1A HEM 601 B 1 
HETATM 14 O O2A HEM . . . F 2 -24.565 -34.731 -16.707 1 128.48 ? O2A HEM 601 B 1 
HETATM 15 C C1B HEM . . . F 2 -23.148 -26.454 -14.335 1 94.81 ? C1B HEM 601 B 1 
HETATM 16 C C2B HEM . . . F 2 -22.227 -25.476 -13.789 1 83.39 ? C2B HEM 601 B 1 
HETATM 17 C C3B HEM . . . F 2 -22.785 -24.259 -13.932 1 97.42 ? C3B HEM 601 B 1 
HETATM 18 C C4B HEM . . . F 2 -24.069 -24.441 -14.576 1 92.71 ? C4B HEM 601 B 1 
HETATM 19 C CMB HEM . . . F 2 -20.861 -25.846 -13.165 1 84.04 ? CMB HEM 601 B 1 
HETATM 20 C CAB HEM . . . F 2 -22.258 -22.854 -13.537 1 115.35 ? CAB HEM 601 B 1 
HETATM 21 C CBB HEM . . . F 2 -21.055 -22.607 -13.006 1 117.41 ? CBB HEM 601 B 1 
HETATM 22 C C1C HEM . . . F 2 -26.121 -23.57 -15.617 1 101.37 ? C1C HEM 601 B 1 
HETATM 23 C C2C HEM . . . F 2 -26.903 -22.487 -16.172 1 113.13 ? C2C HEM 601 B 1 
HETATM 24 C C3C HEM . . . F 2 -27.964 -23.004 -16.794 1 106.27 ? C3C HEM 601 B 1 
HETATM 25 C C4C HEM . . . F 2 -27.895 -24.454 -16.66 1 102.4 ? C4C HEM 601 B 1 
HETATM 26 C CMC HEM . . . F 2 -26.561 -20.987 -16.056 1 122.3 ? CMC HEM 601 B 1 
HETATM 27 C CAC HEM . . . F 2 -29.035 -22.149 -17.513 1 109.55 ? CAC HEM 601 B 1 
HETATM 28 C CBC HEM . . . F 2 -30.14 -22.676 -18.049 1 109 ? CBC HEM 601 B 1 
HETATM 29 C C1D HEM . . . F 2 -28.535 -26.741 -17.287 1 88.57 ? C1D HEM 601 B 1 
HETATM 30 C C2D HEM . . . F 2 -29.462 -27.739 -17.783 1 95.68 ? C2D HEM 601 B 1 
HETATM 31 C C3D HEM . . . F 2 -28.848 -28.925 -17.763 1 80.76 ? C3D HEM 601 B 1 
HETATM 32 C C4D HEM . . . F 2 -27.506 -28.727 -17.249 1 89.15 ? C4D HEM 601 B 1 
HETATM 33 C CMD HEM . . . F 2 -30.904 -27.464 -18.255 1 80.05 ? CMD HEM 601 B 1 
HETATM 34 C CAD HEM . . . F 2 -29.457 -30.276 -18.197 1 83.3 ? CAD HEM 601 B 1 
HETATM 35 C CBD HEM . . . F 2 -29.311 -30.489 -19.698 1 107.18 ? CBD HEM 601 B 1 
HETATM 36 C CGD HEM . . . F 2 -29.695 -31.91 -20.014 1 121.61 ? CGD HEM 601 B 1 
HETATM 37 O O1D HEM . . . F 2 -29.739 -32.268 -21.218 1 121.54 ? O1D HEM 601 B 1 
HETATM 38 O O2D HEM . . . F 2 -29.958 -32.685 -19.058 1 129.72 ? O2D HEM 601 B 1 
HETATM 39 N NA HEM . . . F 2 -24.908 -28.407 -15.769 1 83.09 ? NA HEM 601 B 1 
HETATM 40 N NB HEM . . . F 2 -24.259 -25.786 -14.805 1 96.65 ? NB HEM 601 B 1 
HETATM 41 N NC HEM . . . F 2 -26.755 -24.755 -15.934 1 99.32 ? NC HEM 601 B 1 
HETATM 42 N ND HEM . . . F 2 -27.352 -27.381 -16.969 1 88.82 ? ND HEM 601 B 1 
HETATM 43 FE FE HEM . . . F 2 -25.776 -26.56 -15.916 1 103.02 ? FE HEM 601 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           43 
#