data_7KVO # _model_server_result.job_id VCbyaXk09kLlAboTOrsxgA _model_server_result.datetime_utc '2024-11-25 09:41:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 7KVO # _exptl.entry_id 7KVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 583.783 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.98 _cell.angle_gamma 90 _cell.entry_id 7KVO _cell.length_a 92.882 _cell.length_b 98.084 _cell.length_c 126.772 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 E N30 X6S . A X6S 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 F FE HEM . B HEM 601 1_555 G N30 X6S . B X6S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C35 H41 N3 O3 S' _chem_comp.formula_weight 583.783 _chem_comp.id X6S _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 X6S doub 460 n y C17 C18 X6S sing 461 n y C16 C15 X6S sing 462 n y C18 C19 X6S doub 463 n y C15 C14 X6S doub 464 n y C19 C14 X6S sing 465 n y C14 C13 X6S sing 466 n n C13 C12 X6S sing 467 n n S11 C12 X6S sing 468 n n S11 C10 X6S sing 469 n n C12 C20 X6S sing 470 n n C01 C02 X6S sing 471 n n C04 C02 X6S sing 472 n n C20 O21 X6S doub 473 n n C20 N22 X6S sing 474 n n C02 C03 X6S sing 475 n n C02 O05 X6S sing 476 n n C10 C09 X6S sing 477 n n N08 C09 X6S sing 478 n n N08 C06 X6S sing 479 n n N22 C23 X6S sing 480 n n C09 C32 X6S sing 481 n n C06 O05 X6S sing 482 n n C06 O07 X6S doub 483 n n C24 C23 X6S sing 484 n n C24 C25 X6S sing 485 n n C25 C26 X6S sing 486 n n C32 C33 X6S sing 487 n n C27 C26 X6S doub 488 n y C27 C28 X6S sing 489 n y C35 C36 X6S doub 490 n y C35 C34 X6S sing 491 n y C36 C37 X6S sing 492 n y C26 C31 X6S sing 493 n y C33 C34 X6S doub 494 n y C33 C42 X6S sing 495 n y C34 C39 X6S sing 496 n y C28 C29 X6S doub 497 n y C37 C38 X6S doub 498 n y C42 C41 X6S doub 499 n y C39 C38 X6S sing 500 n y C39 C40 X6S doub 501 n y C31 N30 X6S doub 502 n y C41 C40 X6S sing 503 n y C29 N30 X6S sing 504 n y C12 H1 X6S sing 505 n n C10 H2 X6S sing 506 n n C10 H3 X6S sing 507 n n C15 H4 X6S sing 508 n n C17 H5 X6S sing 509 n n C01 H6 X6S sing 510 n n C01 H7 X6S sing 511 n n C01 H8 X6S sing 512 n n C03 H9 X6S sing 513 n n C03 H10 X6S sing 514 n n C03 H11 X6S sing 515 n n C04 H12 X6S sing 516 n n C04 H13 X6S sing 517 n n C04 H14 X6S sing 518 n n C09 H15 X6S sing 519 n n C13 H16 X6S sing 520 n n C13 H17 X6S sing 521 n n C16 H18 X6S sing 522 n n C18 H19 X6S sing 523 n n C19 H20 X6S sing 524 n n C23 H21 X6S sing 525 n n C23 H22 X6S sing 526 n n C24 H23 X6S sing 527 n n C24 H24 X6S sing 528 n n C25 H25 X6S sing 529 n n C25 H26 X6S sing 530 n n C27 H27 X6S sing 531 n n C28 H28 X6S sing 532 n n C29 H29 X6S sing 533 n n C31 H30 X6S sing 534 n n C32 H31 X6S sing 535 n n C32 H32 X6S sing 536 n n C35 H33 X6S sing 537 n n C36 H34 X6S sing 538 n n C37 H35 X6S sing 539 n n C38 H36 X6S sing 540 n n C40 H37 X6S sing 541 n n C41 H38 X6S sing 542 n n C42 H39 X6S sing 543 n n N08 H40 X6S sing 544 n n N22 H41 X6S sing 545 n n # _atom_sites.entry_id 7KVO _atom_sites.fract_transf_matrix[1][1] 0.010766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000561 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 500 HEM HEM . D 3 SO4 A 1 602 600 SO4 SO4 . E 4 X6S A 1 603 700 X6S 383 . F 2 HEM B 1 601 500 HEM HEM . G 4 X6S B 1 602 700 X6S 383 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 X6S . . . E 4 2.711 -18.155 -46.579 1 148.67 ? C12 X6S 603 A 1 HETATM 2 C C10 X6S . . . E 4 2.613 -15.567 -44.867 1 162.81 ? C10 X6S 603 A 1 HETATM 3 C C14 X6S . . . E 4 2.337 -20.012 -48.234 1 173.56 ? C14 X6S 603 A 1 HETATM 4 C C15 X6S . . . E 4 1.405 -20.997 -48.557 1 180.12 ? C15 X6S 603 A 1 HETATM 5 C C17 X6S . . . E 4 3.17 -22.535 -49.141 1 181.32 ? C17 X6S 603 A 1 HETATM 6 C C20 X6S . . . E 4 2.075 -18.646 -45.285 1 130.29 ? C20 X6S 603 A 1 HETATM 7 C C01 X6S . . . E 4 7.212 -13.335 -46.213 1 173.6 ? C01 X6S 603 A 1 HETATM 8 C C02 X6S . . . E 4 6.751 -12.269 -45.218 1 164.49 ? C02 X6S 603 A 1 HETATM 9 C C03 X6S . . . E 4 7.97 -11.413 -44.827 1 145.66 ? C03 X6S 603 A 1 HETATM 10 C C04 X6S . . . E 4 5.729 -11.314 -45.853 1 165.46 ? C04 X6S 603 A 1 HETATM 11 C C06 X6S . . . E 4 5.036 -13.564 -44.075 1 169.26 ? C06 X6S 603 A 1 HETATM 12 C C09 X6S . . . E 4 3.956 -15.851 -44.108 1 170.41 ? C09 X6S 603 A 1 HETATM 13 C C13 X6S . . . E 4 1.913 -18.675 -47.756 1 168.8 ? C13 X6S 603 A 1 HETATM 14 C C16 X6S . . . E 4 1.816 -22.248 -49.005 1 182.01 ? C16 X6S 603 A 1 HETATM 15 C C18 X6S . . . E 4 4.1 -21.563 -48.804 1 176.52 ? C18 X6S 603 A 1 HETATM 16 C C19 X6S . . . E 4 3.692 -20.314 -48.362 1 172.16 ? C19 X6S 603 A 1 HETATM 17 C C23 X6S . . . E 4 2.195 -20.033 -43.136 1 126.43 ? C23 X6S 603 A 1 HETATM 18 C C24 X6S . . . E 4 1.398 -21.362 -43.186 1 139.47 ? C24 X6S 603 A 1 HETATM 19 C C25 X6S . . . E 4 2.206 -22.663 -43.094 1 142.86 ? C25 X6S 603 A 1 HETATM 20 C C26 X6S . . . E 4 3.33 -22.7 -42.078 1 135.86 ? C26 X6S 603 A 1 HETATM 21 C C27 X6S . . . E 4 4.671 -22.473 -42.398 1 132.58 ? C27 X6S 603 A 1 HETATM 22 C C28 X6S . . . E 4 5.668 -22.522 -41.419 1 123.65 ? C28 X6S 603 A 1 HETATM 23 C C29 X6S . . . E 4 5.304 -22.804 -40.101 1 128.55 ? C29 X6S 603 A 1 HETATM 24 C C31 X6S . . . E 4 3.076 -22.973 -40.719 1 141.55 ? C31 X6S 603 A 1 HETATM 25 C C32 X6S . . . E 4 3.75 -15.786 -42.546 1 182.11 ? C32 X6S 603 A 1 HETATM 26 C C33 X6S . . . E 4 4.096 -16.991 -41.709 1 188.14 ? C33 X6S 603 A 1 HETATM 27 C C34 X6S . . . E 4 5.427 -17.536 -41.614 1 194.07 ? C34 X6S 603 A 1 HETATM 28 C C35 X6S . . . E 4 6.527 -16.977 -42.303 1 197.16 ? C35 X6S 603 A 1 HETATM 29 C C36 X6S . . . E 4 7.779 -17.514 -42.199 1 197.39 ? C36 X6S 603 A 1 HETATM 30 C C37 X6S . . . E 4 8.027 -18.642 -41.397 1 197.95 ? C37 X6S 603 A 1 HETATM 31 C C38 X6S . . . E 4 6.994 -19.209 -40.714 1 197.48 ? C38 X6S 603 A 1 HETATM 32 C C39 X6S . . . E 4 5.693 -18.659 -40.82 1 196.65 ? C39 X6S 603 A 1 HETATM 33 C C40 X6S . . . E 4 4.653 -19.279 -40.096 1 198.28 ? C40 X6S 603 A 1 HETATM 34 C C41 X6S . . . E 4 3.399 -18.759 -40.189 1 196.21 ? C41 X6S 603 A 1 HETATM 35 C C42 X6S . . . E 4 3.122 -17.626 -40.983 1 191.02 ? C42 X6S 603 A 1 HETATM 36 N N08 X6S . . . E 4 5.02 -14.905 -44.509 1 170.6 ? N08 X6S 603 A 1 HETATM 37 N N22 X6S . . . E 4 2.727 -19.519 -44.387 1 123.05 ? N22 X6S 603 A 1 HETATM 38 N N30 X6S . . . E 4 4.016 -23.029 -39.748 1 129.41 ? N30 X6S 603 A 1 HETATM 39 O O05 X6S . . . E 4 6.287 -12.956 -44.03 1 173.67 ? O05 X6S 603 A 1 HETATM 40 O O07 X6S . . . E 4 4.036 -12.944 -43.761 1 159.66 ? O07 X6S 603 A 1 HETATM 41 O O21 X6S . . . E 4 0.941 -18.313 -44.964 1 116.79 ? O21 X6S 603 A 1 HETATM 42 S S11 X6S . . . E 4 2.622 -16.281 -46.585 1 158.98 ? S11 X6S 603 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 42 #