data_7KVQ # _model_server_result.job_id X8oLOj5-GGlR5yhTL1sXcQ _model_server_result.datetime_utc '2024-11-16 23:49:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7KVQ # _exptl.entry_id 7KVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.32 _cell.angle_gamma 90 _cell.entry_id 7KVQ _cell.length_a 153.861 _cell.length_b 97.36 _cell.length_c 93.229 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 I N30 X7D . A X7D 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 J FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 J FE HEM . B HEM 601 1_555 K N30 X7D . B X7D 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 151 n n CHA C4D HEM doub 152 n n CHA HHA HEM sing 153 n n CHB C4A HEM sing 154 n n CHB C1B HEM doub 155 n n CHB HHB HEM sing 156 n n CHC C4B HEM sing 157 n n CHC C1C HEM doub 158 n n CHC HHC HEM sing 159 n n CHD C4C HEM doub 160 n n CHD C1D HEM sing 161 n n CHD HHD HEM sing 162 n n C1A C2A HEM doub 163 n y C1A NA HEM sing 164 n y C2A C3A HEM sing 165 n y C2A CAA HEM sing 166 n n C3A C4A HEM doub 167 n y C3A CMA HEM sing 168 n n C4A NA HEM sing 169 n y CMA HMA HEM sing 170 n n CMA HMAA HEM sing 171 n n CMA HMAB HEM sing 172 n n CAA CBA HEM sing 173 n n CAA HAA HEM sing 174 n n CAA HAAA HEM sing 175 n n CBA CGA HEM sing 176 n n CBA HBA HEM sing 177 n n CBA HBAA HEM sing 178 n n CGA O1A HEM doub 179 n n CGA O2A HEM sing 180 n n C1B C2B HEM sing 181 n n C1B NB HEM sing 182 n n C2B C3B HEM doub 183 n n C2B CMB HEM sing 184 n n C3B C4B HEM sing 185 n n C3B CAB HEM sing 186 n n C4B NB HEM doub 187 n n CMB HMB HEM sing 188 n n CMB HMBA HEM sing 189 n n CMB HMBB HEM sing 190 n n CAB CBB HEM doub 191 n n CAB HAB HEM sing 192 n n CBB HBB HEM sing 193 n n CBB HBBA HEM sing 194 n n C1C C2C HEM sing 195 n y C1C NC HEM sing 196 n y C2C C3C HEM doub 197 n y C2C CMC HEM sing 198 n n C3C C4C HEM sing 199 n y C3C CAC HEM sing 200 n n C4C NC HEM sing 201 n y CMC HMC HEM sing 202 n n CMC HMCA HEM sing 203 n n CMC HMCB HEM sing 204 n n CAC CBC HEM doub 205 n n CAC HAC HEM sing 206 n n CBC HBC HEM sing 207 n n CBC HBCA HEM sing 208 n n C1D C2D HEM sing 209 n n C1D ND HEM doub 210 n n C2D C3D HEM doub 211 n n C2D CMD HEM sing 212 n n C3D C4D HEM sing 213 n n C3D CAD HEM sing 214 n n C4D ND HEM sing 215 n n CMD HMD HEM sing 216 n n CMD HMDA HEM sing 217 n n CMD HMDB HEM sing 218 n n CAD CBD HEM sing 219 n n CAD HAD HEM sing 220 n n CAD HADA HEM sing 221 n n CBD CGD HEM sing 222 n n CBD HBD HEM sing 223 n n CBD HBDA HEM sing 224 n n CGD O1D HEM doub 225 n n CGD O2D HEM sing 226 n n O2A H2A HEM sing 227 n n O2D H2D HEM sing 228 n n FE NA HEM sing 229 n n FE NB HEM sing 230 n n FE NC HEM sing 231 n n FE ND HEM sing 232 n n # _atom_sites.entry_id 7KVQ _atom_sites.fract_transf_matrix[1][1] 0.006499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004437 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 500 HEM HEM . D 3 SO4 A 1 602 600 SO4 SO4 . E 4 GOL A 1 603 601 GOL GOL . F 5 EDO A 1 604 650 EDO EDO . G 5 EDO A 1 605 651 EDO EDO . H 5 EDO A 1 606 652 EDO EDO . I 6 X7D A 1 607 700 X7D 129 . J 2 HEM B 1 601 500 HEM HEM . K 6 X7D B 1 602 700 X7D 129 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 122.156 36.687 92.232 1 61.18 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . C 2 125.387 34.091 89.697 1 53.27 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . C 2 122.81 30.077 90.578 1 52.75 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . C 2 119.708 32.628 93.31 1 64.45 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . C 2 123.244 36.343 91.459 1 66.73 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . C 2 124.247 37.254 90.948 1 66.31 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . C 2 125.135 36.541 90.248 1 55 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . C 2 124.734 35.15 90.292 1 52.71 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . C 2 126.377 37.097 89.522 1 44.07 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . C 2 124.267 38.782 91.167 1 43.51 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . C 2 125.324 39.158 92.2 1 47.2 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . C 2 125.536 40.648 92.171 1 47.91 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . C 2 126.489 41.129 92.836 1 57.18 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . C 2 124.756 41.354 91.481 1 63.66 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . C 2 124.966 32.778 89.697 1 48.39 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . C 2 125.614 31.675 89.015 1 58.77 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . C 2 124.898 30.559 89.257 1 65.84 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . C 2 123.78 30.933 90.103 1 55.73 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . C 2 126.902 31.838 88.174 1 58 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . C 2 125.128 29.097 88.787 1 50.52 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . C 2 126.181 28.676 88.079 1 56.16 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . C 2 121.791 30.396 91.452 1 54.85 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . C 2 120.926 29.456 92.133 1 65.97 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . C 2 120.066 30.141 92.891 1 61.89 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . C 2 120.352 31.559 92.719 1 58.23 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . C 2 120.986 27.919 92.005 1 47.58 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . C 2 118.978 29.475 93.77 1 55.48 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . C 2 118.108 30.175 94.506 1 72.11 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . C 2 120.073 33.955 93.224 1 70.54 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . C 2 119.351 35.083 93.778 1 65.82 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . C 2 120.025 36.195 93.48 1 63.45 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . C 2 121.203 35.823 92.726 1 65.45 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . C 2 118.031 35.013 94.574 1 73.1 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . C 2 119.626 37.631 93.878 1 58.92 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . C 2 120.455 38.021 95.097 1 63.58 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . C 2 119.905 39.272 95.728 1 67.89 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . C 2 120.126 39.465 96.951 1 69.22 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . C 2 119.242 40.068 95.015 1 72.77 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . C 2 123.575 35.068 91.042 1 61.02 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . C 2 123.852 32.289 90.349 1 59.26 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . C 2 121.411 31.669 91.833 1 59.42 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . C 2 121.198 34.448 92.588 1 70.48 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . C 2 122.533 33.362 91.494 1 57.55 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 54 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #