data_7KVQ
#
_model_server_result.job_id            daWYNPViDSm8IFNM59zoCg 
_model_server_result.datetime_utc      '2024-11-16 23:41:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kvq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":601}' 
#
_entry.id    7KVQ 
#
_exptl.entry_id    7KVQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.32 
_cell.angle_gamma         90 
_cell.entry_id            7KVQ 
_cell.length_a            153.861 
_cell.length_b            97.36 
_cell.length_c            93.229 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KVQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 I N30 X7D . A X7D 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 J FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc4 J FE HEM . B HEM 601 1_555 K N30 X7D . B X7D 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 151 n n 
CHA C4D HEM doub 152 n n 
CHA HHA HEM sing 153 n n 
CHB C4A HEM sing 154 n n 
CHB C1B HEM doub 155 n n 
CHB HHB HEM sing 156 n n 
CHC C4B HEM sing 157 n n 
CHC C1C HEM doub 158 n n 
CHC HHC HEM sing 159 n n 
CHD C4C HEM doub 160 n n 
CHD C1D HEM sing 161 n n 
CHD HHD HEM sing 162 n n 
C1A C2A HEM doub 163 n y 
C1A NA HEM sing 164 n y 
C2A C3A HEM sing 165 n y 
C2A CAA HEM sing 166 n n 
C3A C4A HEM doub 167 n y 
C3A CMA HEM sing 168 n n 
C4A NA HEM sing 169 n y 
CMA HMA HEM sing 170 n n 
CMA HMAA HEM sing 171 n n 
CMA HMAB HEM sing 172 n n 
CAA CBA HEM sing 173 n n 
CAA HAA HEM sing 174 n n 
CAA HAAA HEM sing 175 n n 
CBA CGA HEM sing 176 n n 
CBA HBA HEM sing 177 n n 
CBA HBAA HEM sing 178 n n 
CGA O1A HEM doub 179 n n 
CGA O2A HEM sing 180 n n 
C1B C2B HEM sing 181 n n 
C1B NB HEM sing 182 n n 
C2B C3B HEM doub 183 n n 
C2B CMB HEM sing 184 n n 
C3B C4B HEM sing 185 n n 
C3B CAB HEM sing 186 n n 
C4B NB HEM doub 187 n n 
CMB HMB HEM sing 188 n n 
CMB HMBA HEM sing 189 n n 
CMB HMBB HEM sing 190 n n 
CAB CBB HEM doub 191 n n 
CAB HAB HEM sing 192 n n 
CBB HBB HEM sing 193 n n 
CBB HBBA HEM sing 194 n n 
C1C C2C HEM sing 195 n y 
C1C NC HEM sing 196 n y 
C2C C3C HEM doub 197 n y 
C2C CMC HEM sing 198 n n 
C3C C4C HEM sing 199 n y 
C3C CAC HEM sing 200 n n 
C4C NC HEM sing 201 n y 
CMC HMC HEM sing 202 n n 
CMC HMCA HEM sing 203 n n 
CMC HMCB HEM sing 204 n n 
CAC CBC HEM doub 205 n n 
CAC HAC HEM sing 206 n n 
CBC HBC HEM sing 207 n n 
CBC HBCA HEM sing 208 n n 
C1D C2D HEM sing 209 n n 
C1D ND HEM doub 210 n n 
C2D C3D HEM doub 211 n n 
C2D CMD HEM sing 212 n n 
C3D C4D HEM sing 213 n n 
C3D CAD HEM sing 214 n n 
C4D ND HEM sing 215 n n 
CMD HMD HEM sing 216 n n 
CMD HMDA HEM sing 217 n n 
CMD HMDB HEM sing 218 n n 
CAD CBD HEM sing 219 n n 
CAD HAD HEM sing 220 n n 
CAD HADA HEM sing 221 n n 
CBD CGD HEM sing 222 n n 
CBD HBD HEM sing 223 n n 
CBD HBDA HEM sing 224 n n 
CGD O1D HEM doub 225 n n 
CGD O2D HEM sing 226 n n 
O2A H2A HEM sing 227 n n 
O2D H2D HEM sing 228 n n 
FE NA HEM sing 229 n n 
FE NB HEM sing 230 n n 
FE NC HEM sing 231 n n 
FE ND HEM sing 232 n n 
#
_atom_sites.entry_id                     7KVQ 
_atom_sites.fract_transf_matrix[1][1]    0.006499 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004437 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010271 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012987 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 500 HEM HEM . 
D 3 SO4 A 1 602 600 SO4 SO4 . 
E 4 GOL A 1 603 601 GOL GOL . 
F 5 EDO A 1 604 650 EDO EDO . 
G 5 EDO A 1 605 651 EDO EDO . 
H 5 EDO A 1 606 652 EDO EDO . 
I 6 X7D A 1 607 700 X7D 129 . 
J 2 HEM B 1 601 500 HEM HEM . 
K 6 X7D B 1 602 700 X7D 129 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 2 123.118 27.56 127.781 1 77.96 ? CHA HEM 601 B 1 
HETATM 2 C CHB HEM . . . J 2 127.197 29.547 126.035 1 91.85 ? CHB HEM 601 B 1 
HETATM 3 C CHC HEM . . . J 2 125.671 33.918 127.48 1 98.42 ? CHC HEM 601 B 1 
HETATM 4 C CHD HEM . . . J 2 121.622 31.931 129.287 1 93.27 ? CHD HEM 601 B 1 
HETATM 5 C C1A HEM . . . J 2 124.351 27.711 127.185 1 78.16 ? C1A HEM 601 B 1 
HETATM 6 C C2A HEM . . . J 2 125.157 26.653 126.611 1 79.62 ? C2A HEM 601 B 1 
HETATM 7 C C3A HEM . . . J 2 126.279 27.199 126.134 1 84.85 ? C3A HEM 601 B 1 
HETATM 8 C C4A HEM . . . J 2 126.229 28.627 126.38 1 84.75 ? C4A HEM 601 B 1 
HETATM 9 C CMA HEM . . . J 2 127.432 26.45 125.434 1 84.58 ? CMA HEM 601 B 1 
HETATM 10 C CAA HEM . . . J 2 124.782 25.154 126.575 1 84.55 ? CAA HEM 601 B 1 
HETATM 11 C CBA HEM . . . J 2 124.325 24.752 125.177 1 101.81 ? CBA HEM 601 B 1 
HETATM 12 C CGA HEM . . . J 2 124.206 23.253 125.103 1 102.58 ? CGA HEM 601 B 1 
HETATM 13 O O1A HEM . . . J 2 123.935 22.727 123.993 1 106.88 ? O1A HEM 601 B 1 
HETATM 14 O O2A HEM . . . J 2 124.384 22.584 126.153 1 101.11 ? O2A HEM 601 B 1 
HETATM 15 C C1B HEM . . . J 2 127.132 30.909 126.244 1 90.56 ? C1B HEM 601 B 1 
HETATM 16 C C2B HEM . . . J 2 128.103 31.89 125.798 1 78.55 ? C2B HEM 601 B 1 
HETATM 17 C C3B HEM . . . J 2 127.682 33.105 126.199 1 105.93 ? C3B HEM 601 B 1 
HETATM 18 C C4B HEM . . . J 2 126.43 32.919 126.909 1 101.58 ? C4B HEM 601 B 1 
HETATM 19 C CMB HEM . . . J 2 129.378 31.52 125.004 1 65.93 ? CMB HEM 601 B 1 
HETATM 20 C CAB HEM . . . J 2 128.322 34.505 125.997 1 124.27 ? CAB HEM 601 B 1 
HETATM 21 C CBB HEM . . . J 2 129.455 34.744 125.325 1 124.11 ? CBB HEM 601 B 1 
HETATM 22 C C1C HEM . . . J 2 124.417 33.776 128.037 1 93.26 ? C1C HEM 601 B 1 
HETATM 23 C C2C HEM . . . J 2 123.532 34.853 128.425 1 105.75 ? C2C HEM 601 B 1 
HETATM 24 C C3C HEM . . . J 2 122.412 34.326 128.925 1 92.37 ? C3C HEM 601 B 1 
HETATM 25 C C4C HEM . . . J 2 122.541 32.875 128.874 1 92.11 ? C4C HEM 601 B 1 
HETATM 26 C CMC HEM . . . J 2 123.834 36.361 128.286 1 115.14 ? CMC HEM 601 B 1 
HETATM 27 C CAC HEM . . . J 2 121.225 35.171 129.45 1 89.29 ? CAC HEM 601 B 1 
HETATM 28 C CBC HEM . . . J 2 120.12 34.631 129.975 1 94.96 ? CBC HEM 601 B 1 
HETATM 29 C C1D HEM . . . J 2 121.69 30.57 129.075 1 88.36 ? C1D HEM 601 B 1 
HETATM 30 C C2D HEM . . . J 2 120.752 29.578 129.561 1 83.14 ? C2D HEM 601 B 1 
HETATM 31 C C3D HEM . . . J 2 121.164 28.376 129.148 1 77.41 ? C3D HEM 601 B 1 
HETATM 32 C C4D HEM . . . J 2 122.38 28.557 128.381 1 79.17 ? C4D HEM 601 B 1 
HETATM 33 C CMD HEM . . . J 2 119.497 29.868 130.412 1 83.82 ? CMD HEM 601 B 1 
HETATM 34 C CAD HEM . . . J 2 120.473 27.022 129.426 1 79.49 ? CAD HEM 601 B 1 
HETATM 35 C CBD HEM . . . J 2 119.313 26.832 128.453 1 110.35 ? CBD HEM 601 B 1 
HETATM 36 C CGD HEM . . . J 2 118.777 25.428 128.566 1 112.14 ? CGD HEM 601 B 1 
HETATM 37 O O1D HEM . . . J 2 117.723 25.138 127.944 1 113.74 ? O1D HEM 601 B 1 
HETATM 38 O O2D HEM . . . J 2 119.402 24.601 129.278 1 100.47 ? O2D HEM 601 B 1 
HETATM 39 N NA HEM . . . J 2 125.036 28.902 127.023 1 77.68 ? NA HEM 601 B 1 
HETATM 40 N NB HEM . . . J 2 126.128 31.573 126.918 1 96.6 ? NB HEM 601 B 1 
HETATM 41 N NC HEM . . . J 2 123.779 32.585 128.326 1 92.33 ? NC HEM 601 B 1 
HETATM 42 N ND HEM . . . J 2 122.67 29.908 128.359 1 84 ? ND HEM 601 B 1 
HETATM 43 FE FE HEM . . . J 2 124.377 30.752 127.611 1 101.06 ? FE HEM 601 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#