data_7KVQ # _model_server_result.job_id oOrIlz4FhcTNWY2uEsIJYQ _model_server_result.datetime_utc '2024-11-16 23:52:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":607}' # _entry.id 7KVQ # _exptl.entry_id 7KVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 583.783 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.32 _cell.angle_gamma 90 _cell.entry_id 7KVQ _cell.length_a 153.861 _cell.length_b 97.36 _cell.length_c 93.229 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 I N30 X7D . A X7D 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 J FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 J FE HEM . B HEM 601 1_555 K N30 X7D . B X7D 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'C35 H41 N3 O3 S' _chem_comp.formula_weight 583.783 _chem_comp.id X7D _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C04 C02 X7D sing 482 n n C02 C01 X7D sing 483 n n C02 C03 X7D sing 484 n n C02 O05 X7D sing 485 n n C19 C18 X7D doub 486 n y C19 C14 X7D sing 487 n y C18 C17 X7D sing 488 n y O05 C06 X7D sing 489 n n C36 C37 X7D doub 490 n y C36 C35 X7D sing 491 n y C13 C14 X7D sing 492 n n C13 C12 X7D sing 493 n n C14 C15 X7D doub 494 n y C37 C38 X7D sing 495 n y S11 C10 X7D sing 496 n n S11 C12 X7D sing 497 n n C17 C16 X7D doub 498 n y C10 C09 X7D sing 499 n n C35 C34 X7D doub 500 n y C06 N08 X7D sing 501 n n C06 O07 X7D doub 502 n n C12 C20 X7D sing 503 n n C09 N08 X7D sing 504 n n C09 C32 X7D sing 505 n n C15 C16 X7D sing 506 n y C38 C39 X7D doub 507 n y C28 C27 X7D doub 508 n y C28 C29 X7D sing 509 n y C34 C39 X7D sing 510 n y C34 C33 X7D sing 511 n y N22 C20 X7D sing 512 n n N22 C23 X7D sing 513 n n C27 C26 X7D sing 514 n y C20 O21 X7D doub 515 n n C39 C40 X7D sing 516 n y C29 N30 X7D doub 517 n y C32 C33 X7D sing 518 n n C33 C42 X7D doub 519 n y C24 C23 X7D sing 520 n n C24 C25 X7D sing 521 n n C26 C25 X7D sing 522 n n C26 C31 X7D doub 523 n y C40 C41 X7D doub 524 n y N30 C31 X7D sing 525 n y C42 C41 X7D sing 526 n y C01 H1 X7D sing 527 n n C01 H2 X7D sing 528 n n C01 H3 X7D sing 529 n n C03 H4 X7D sing 530 n n C03 H5 X7D sing 531 n n C03 H6 X7D sing 532 n n C04 H7 X7D sing 533 n n C04 H8 X7D sing 534 n n C04 H9 X7D sing 535 n n C09 H10 X7D sing 536 n n C10 H11 X7D sing 537 n n C10 H12 X7D sing 538 n n C12 H13 X7D sing 539 n n C13 H14 X7D sing 540 n n C13 H15 X7D sing 541 n n C15 H16 X7D sing 542 n n C16 H17 X7D sing 543 n n C17 H18 X7D sing 544 n n C18 H19 X7D sing 545 n n C19 H20 X7D sing 546 n n C23 H21 X7D sing 547 n n C23 H22 X7D sing 548 n n C24 H23 X7D sing 549 n n C24 H24 X7D sing 550 n n C25 H25 X7D sing 551 n n C25 H26 X7D sing 552 n n C27 H27 X7D sing 553 n n C28 H28 X7D sing 554 n n C29 H29 X7D sing 555 n n C31 H30 X7D sing 556 n n C32 H31 X7D sing 557 n n C32 H32 X7D sing 558 n n C35 H33 X7D sing 559 n n C36 H34 X7D sing 560 n n C37 H35 X7D sing 561 n n C38 H36 X7D sing 562 n n C40 H37 X7D sing 563 n n C41 H38 X7D sing 564 n n C42 H39 X7D sing 565 n n N08 H40 X7D sing 566 n n N22 H41 X7D sing 567 n n # _atom_sites.entry_id 7KVQ _atom_sites.fract_transf_matrix[1][1] 0.006499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004437 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 500 HEM HEM . D 3 SO4 A 1 602 600 SO4 SO4 . E 4 GOL A 1 603 601 GOL GOL . F 5 EDO A 1 604 650 EDO EDO . G 5 EDO A 1 605 651 EDO EDO . H 5 EDO A 1 606 652 EDO EDO . I 6 X7D A 1 607 700 X7D 129 . J 2 HEM B 1 601 500 HEM HEM . K 6 X7D B 1 602 700 X7D 129 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 X7D . . . I 6 120.065 44.262 84.816 1 125.27 ? C01 X7D 607 A 1 HETATM 2 C C02 X7D . . . I 6 118.726 45.03 84.788 1 130.5 ? C02 X7D 607 A 1 HETATM 3 C C03 X7D . . . I 6 118.861 46.397 85.393 1 154.29 ? C03 X7D 607 A 1 HETATM 4 C C04 X7D . . . I 6 118.317 45.226 83.282 1 104.83 ? C04 X7D 607 A 1 HETATM 5 C C06 X7D . . . I 6 117.928 43.795 86.793 1 162.01 ? C06 X7D 607 A 1 HETATM 6 C C09 X7D . . . I 6 118.234 41.332 87.144 1 147.78 ? C09 X7D 607 A 1 HETATM 7 C C10 X7D . . . I 6 117.38 40.209 86.487 1 141.11 ? C10 X7D 607 A 1 HETATM 8 C C12 X7D . . . I 6 114.416 39.472 87.019 1 133.77 ? C12 X7D 607 A 1 HETATM 9 C C13 X7D . . . I 6 113.847 38.593 85.844 1 133.73 ? C13 X7D 607 A 1 HETATM 10 C C14 X7D . . . I 6 113.465 37.097 86.053 1 134.53 ? C14 X7D 607 A 1 HETATM 11 C C15 X7D . . . I 6 112.998 36.59 87.283 1 144.96 ? C15 X7D 607 A 1 HETATM 12 C C16 X7D . . . I 6 112.655 35.241 87.455 1 152.52 ? C16 X7D 607 A 1 HETATM 13 C C17 X7D . . . I 6 112.755 34.345 86.389 1 137.57 ? C17 X7D 607 A 1 HETATM 14 C C18 X7D . . . I 6 113.205 34.815 85.154 1 129.62 ? C18 X7D 607 A 1 HETATM 15 C C19 X7D . . . I 6 113.55 36.167 84.993 1 128.41 ? C19 X7D 607 A 1 HETATM 16 C C20 X7D . . . I 6 115.161 38.723 88.142 1 126.41 ? C20 X7D 607 A 1 HETATM 17 C C23 X7D . . . I 6 116.688 36.863 89.033 1 106.96 ? C23 X7D 607 A 1 HETATM 18 C C24 X7D . . . I 6 116.633 35.299 88.926 1 89.64 ? C24 X7D 607 A 1 HETATM 19 C C25 X7D . . . I 6 117.58 34.508 89.885 1 98.22 ? C25 X7D 607 A 1 HETATM 20 C C26 X7D . . . I 6 118.997 34.294 89.36 1 97.08 ? C26 X7D 607 A 1 HETATM 21 C C27 X7D . . . I 6 119.355 34.405 88.008 1 86.76 ? C27 X7D 607 A 1 HETATM 22 C C28 X7D . . . I 6 120.675 34.196 87.58 1 75.41 ? C28 X7D 607 A 1 HETATM 23 C C29 X7D . . . I 6 121.647 33.871 88.538 1 94.27 ? C29 X7D 607 A 1 HETATM 24 C C31 X7D . . . I 6 120.052 33.96 90.233 1 107.26 ? C31 X7D 607 A 1 HETATM 25 C C32 X7D . . . I 6 118.774 40.947 88.577 1 142.67 ? C32 X7D 607 A 1 HETATM 26 C C33 X7D . . . I 6 119.507 39.634 88.814 1 122.37 ? C33 X7D 607 A 1 HETATM 27 C C34 X7D . . . I 6 120.494 38.997 87.922 1 110.53 ? C34 X7D 607 A 1 HETATM 28 C C35 X7D . . . I 6 120.876 39.573 86.654 1 111.26 ? C35 X7D 607 A 1 HETATM 29 C C36 X7D . . . I 6 121.794 38.954 85.827 1 121.28 ? C36 X7D 607 A 1 HETATM 30 C C37 X7D . . . I 6 122.387 37.738 86.21 1 127.72 ? C37 X7D 607 A 1 HETATM 31 C C38 X7D . . . I 6 122.055 37.155 87.418 1 126.96 ? C38 X7D 607 A 1 HETATM 32 C C39 X7D . . . I 6 121.091 37.805 88.274 1 127.23 ? C39 X7D 607 A 1 HETATM 33 C C40 X7D . . . I 6 120.773 37.16 89.519 1 151.85 ? C40 X7D 607 A 1 HETATM 34 C C41 X7D . . . I 6 119.857 37.754 90.362 1 153.91 ? C41 X7D 607 A 1 HETATM 35 C C42 X7D . . . I 6 119.251 38.975 89.999 1 136.31 ? C42 X7D 607 A 1 HETATM 36 N N08 X7D . . . I 6 117.459 42.55 87.191 1 159.76 ? N08 X7D 607 A 1 HETATM 37 N N22 X7D . . . I 6 115.953 37.588 87.961 1 111.2 ? N22 X7D 607 A 1 HETATM 38 N N30 X7D . . . I 6 121.336 33.755 89.851 1 127.54 ? N30 X7D 607 A 1 HETATM 39 O O05 X7D . . . I 6 117.71 44.264 85.521 1 143.46 ? O05 X7D 607 A 1 HETATM 40 O O07 X7D . . . I 6 118.551 44.445 87.626 1 175.43 ? O07 X7D 607 A 1 HETATM 41 O O21 X7D . . . I 6 115.078 39.169 89.309 1 148.44 ? O21 X7D 607 A 1 HETATM 42 S S11 X7D . . . I 6 115.59 40.757 86.306 1 147.7 ? S11 X7D 607 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #