data_7KVR
#
_model_server_result.job_id            3rD0Jzc10aVDhJm0N629Sg 
_model_server_result.datetime_utc      '2024-11-05 23:58:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kvr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":704}' 
#
_entry.id    7KVR 
#
_exptl.entry_id    7KVR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KVR 
_cell.length_a            67.6 
_cell.length_b            101.474 
_cell.length_c            102.227 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KVR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     7KVR 
_atom_sites.fract_transf_matrix[1][1]    0.014793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009855 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009782 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DMS A 1 401 401 DMS DMS . 
D 3 PEG A 1 402 501 PEG PEG . 
E 3 PEG A 1 403 601 PEG PEG . 
F 3 PEG A 1 404 801 PEG PEG . 
G 3 PEG A 1 405 1001 PEG PEG . 
H 2 DMS A 1 406 5 DMS DMS . 
I 2 DMS A 1 407 6 DMS DMS . 
J 3 PEG B 1 701 701 PEG PEG . 
K 2 DMS B 1 702 401 DMS DMS . 
L 4 X4V B 1 703 601 X4V UNL . 
M 2 DMS B 1 704 2 DMS DMS . 
N 2 DMS B 1 705 8 DMS DMS . 
O 5 HOH A 1 501 95 HOH HOH . 
O 5 HOH A 2 502 19 HOH HOH . 
O 5 HOH A 3 503 79 HOH HOH . 
O 5 HOH A 4 504 81 HOH HOH . 
O 5 HOH A 5 505 45 HOH HOH . 
O 5 HOH A 6 506 67 HOH HOH . 
O 5 HOH A 7 507 112 HOH HOH . 
O 5 HOH A 8 508 23 HOH HOH . 
O 5 HOH A 9 509 74 HOH HOH . 
O 5 HOH A 10 510 75 HOH HOH . 
O 5 HOH A 11 511 3 HOH HOH . 
O 5 HOH A 12 512 22 HOH HOH . 
O 5 HOH A 13 513 110 HOH HOH . 
O 5 HOH A 14 514 25 HOH HOH . 
O 5 HOH A 15 515 14 HOH HOH . 
O 5 HOH A 16 516 16 HOH HOH . 
O 5 HOH A 17 517 2 HOH HOH . 
O 5 HOH A 18 518 1 HOH HOH . 
O 5 HOH A 19 519 24 HOH HOH . 
O 5 HOH A 20 520 53 HOH HOH . 
O 5 HOH A 21 521 70 HOH HOH . 
O 5 HOH A 22 522 18 HOH HOH . 
O 5 HOH A 23 523 51 HOH HOH . 
O 5 HOH A 24 524 50 HOH HOH . 
O 5 HOH A 25 525 10 HOH HOH . 
O 5 HOH A 26 526 31 HOH HOH . 
O 5 HOH A 27 527 6 HOH HOH . 
O 5 HOH A 28 528 4 HOH HOH . 
O 5 HOH A 29 529 91 HOH HOH . 
O 5 HOH A 30 530 17 HOH HOH . 
O 5 HOH A 31 531 21 HOH HOH . 
O 5 HOH A 32 532 83 HOH HOH . 
O 5 HOH A 33 533 33 HOH HOH . 
O 5 HOH A 34 534 73 HOH HOH . 
O 5 HOH A 35 535 64 HOH HOH . 
O 5 HOH A 36 536 87 HOH HOH . 
O 5 HOH A 37 537 27 HOH HOH . 
O 5 HOH A 38 538 28 HOH HOH . 
O 5 HOH A 39 539 44 HOH HOH . 
O 5 HOH A 40 540 72 HOH HOH . 
O 5 HOH A 41 541 32 HOH HOH . 
O 5 HOH A 42 542 114 HOH HOH . 
O 5 HOH A 43 543 35 HOH HOH . 
O 5 HOH A 44 544 57 HOH HOH . 
O 5 HOH A 45 545 68 HOH HOH . 
O 5 HOH A 46 546 98 HOH HOH . 
O 5 HOH A 47 547 107 HOH HOH . 
O 5 HOH A 48 548 104 HOH HOH . 
O 5 HOH A 49 549 43 HOH HOH . 
O 5 HOH A 50 550 48 HOH HOH . 
O 5 HOH A 51 551 93 HOH HOH . 
O 5 HOH A 52 552 115 HOH HOH . 
O 5 HOH A 53 553 46 HOH HOH . 
O 5 HOH A 54 554 62 HOH HOH . 
O 5 HOH A 55 555 94 HOH HOH . 
O 5 HOH A 56 556 92 HOH HOH . 
O 5 HOH A 57 557 59 HOH HOH . 
O 5 HOH A 58 558 47 HOH HOH . 
O 5 HOH A 59 559 86 HOH HOH . 
O 5 HOH A 60 560 96 HOH HOH . 
P 5 HOH B 1 801 101 HOH HOH . 
P 5 HOH B 2 802 108 HOH HOH . 
P 5 HOH B 3 803 71 HOH HOH . 
P 5 HOH B 4 804 106 HOH HOH . 
P 5 HOH B 5 805 102 HOH HOH . 
P 5 HOH B 6 806 20 HOH HOH . 
P 5 HOH B 7 807 5 HOH HOH . 
P 5 HOH B 8 808 78 HOH HOH . 
P 5 HOH B 9 809 54 HOH HOH . 
P 5 HOH B 10 810 11 HOH HOH . 
P 5 HOH B 11 811 30 HOH HOH . 
P 5 HOH B 12 812 42 HOH HOH . 
P 5 HOH B 13 813 8 HOH HOH . 
P 5 HOH B 14 814 82 HOH HOH . 
P 5 HOH B 15 815 12 HOH HOH . 
P 5 HOH B 16 816 7 HOH HOH . 
P 5 HOH B 17 817 15 HOH HOH . 
P 5 HOH B 18 818 65 HOH HOH . 
P 5 HOH B 19 819 40 HOH HOH . 
P 5 HOH B 20 820 9 HOH HOH . 
P 5 HOH B 21 821 103 HOH HOH . 
P 5 HOH B 22 822 13 HOH HOH . 
P 5 HOH B 23 823 99 HOH HOH . 
P 5 HOH B 24 824 117 HOH HOH . 
P 5 HOH B 25 825 29 HOH HOH . 
P 5 HOH B 26 826 34 HOH HOH . 
P 5 HOH B 27 827 97 HOH HOH . 
P 5 HOH B 28 828 80 HOH HOH . 
P 5 HOH B 29 829 37 HOH HOH . 
P 5 HOH B 30 830 55 HOH HOH . 
P 5 HOH B 31 831 26 HOH HOH . 
P 5 HOH B 32 832 90 HOH HOH . 
P 5 HOH B 33 833 52 HOH HOH . 
P 5 HOH B 34 834 69 HOH HOH . 
P 5 HOH B 35 835 116 HOH HOH . 
P 5 HOH B 36 836 63 HOH HOH . 
P 5 HOH B 37 837 36 HOH HOH . 
P 5 HOH B 38 838 41 HOH HOH . 
P 5 HOH B 39 839 60 HOH HOH . 
P 5 HOH B 40 840 61 HOH HOH . 
P 5 HOH B 41 841 39 HOH HOH . 
P 5 HOH B 42 842 85 HOH HOH . 
P 5 HOH B 43 843 58 HOH HOH . 
P 5 HOH B 44 844 76 HOH HOH . 
P 5 HOH B 45 845 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . M 2 -7.145 3.517 11.801 1 63.3 ? S DMS 704 B 1 
HETATM 2 O O DMS . . . M 2 -8.316 3.258 10.949 1 55.54 ? O DMS 704 B 1 
HETATM 3 C C1 DMS . . . M 2 -7.142 5.148 12.608 1 68.15 ? C1 DMS 704 B 1 
HETATM 4 C C2 DMS . . . M 2 -5.612 3.677 10.818 1 50.63 ? C2 DMS 704 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#