data_7KVS
#
_model_server_result.job_id            FfC_tuiuPxNAPfF5th_3Yg 
_model_server_result.datetime_utc      '2024-11-25 20:32:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kvs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":601}' 
#
_entry.id    7KVS 
#
_exptl.entry_id    7KVS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.37 
_cell.angle_gamma         90 
_cell.entry_id            7KVS 
_cell.length_a            154.51 
_cell.length_b            98.22 
_cell.length_c            93.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KVS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 G N30 X74 . A X74 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc4 J FE HEM . B HEM 602 1_555 K N30 X74 . B X74 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     7KVS 
_atom_sites.fract_transf_matrix[1][1]    0.006472 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004427 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010181 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01296 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 500 HEM HEM . 
D 3 SO4 A 1 602 600 SO4 SO4 . 
E 4 GOL A 1 603 601 GOL GOL . 
F 5 EDO A 1 604 650 EDO EDO . 
G 6 X74 A 1 605 700 X74 145 . 
H 5 EDO A 1 606 650 EDO EDO . 
I 4 GOL B 1 601 602 GOL GOL . 
J 2 HEM B 1 602 500 HEM HEM . 
K 6 X74 B 1 603 700 X74 145 . 
L 7 HOH A 1 701 35 HOH HOH . 
L 7 HOH A 2 702 31 HOH HOH . 
L 7 HOH A 3 703 27 HOH HOH . 
L 7 HOH A 4 704 3 HOH HOH . 
L 7 HOH A 5 705 42 HOH HOH . 
L 7 HOH A 6 706 2 HOH HOH . 
L 7 HOH A 7 707 13 HOH HOH . 
L 7 HOH A 8 708 38 HOH HOH . 
L 7 HOH A 9 709 14 HOH HOH . 
L 7 HOH A 10 710 8 HOH HOH . 
L 7 HOH A 11 711 44 HOH HOH . 
L 7 HOH A 12 712 41 HOH HOH . 
L 7 HOH A 13 713 49 HOH HOH . 
L 7 HOH A 14 714 11 HOH HOH . 
L 7 HOH A 15 715 15 HOH HOH . 
L 7 HOH A 16 716 28 HOH HOH . 
L 7 HOH A 17 717 34 HOH HOH . 
L 7 HOH A 18 718 5 HOH HOH . 
L 7 HOH A 19 719 47 HOH HOH . 
L 7 HOH A 20 720 48 HOH HOH . 
L 7 HOH A 21 721 37 HOH HOH . 
L 7 HOH A 22 722 29 HOH HOH . 
L 7 HOH A 23 723 46 HOH HOH . 
L 7 HOH A 24 724 33 HOH HOH . 
L 7 HOH A 25 725 39 HOH HOH . 
L 7 HOH A 26 726 9 HOH HOH . 
L 7 HOH A 27 727 32 HOH HOH . 
L 7 HOH A 28 728 6 HOH HOH . 
L 7 HOH A 29 729 1 HOH HOH . 
L 7 HOH A 30 730 12 HOH HOH . 
L 7 HOH A 31 731 10 HOH HOH . 
L 7 HOH A 32 732 45 HOH HOH . 
L 7 HOH A 33 733 30 HOH HOH . 
L 7 HOH A 34 734 43 HOH HOH . 
L 7 HOH A 35 735 7 HOH HOH . 
L 7 HOH A 36 736 24 HOH HOH . 
L 7 HOH A 37 737 26 HOH HOH . 
L 7 HOH A 38 738 36 HOH HOH . 
M 7 HOH B 1 701 23 HOH HOH . 
M 7 HOH B 2 702 50 HOH HOH . 
M 7 HOH B 3 703 20 HOH HOH . 
M 7 HOH B 4 704 18 HOH HOH . 
M 7 HOH B 5 705 22 HOH HOH . 
M 7 HOH B 6 706 16 HOH HOH . 
M 7 HOH B 7 707 51 HOH HOH . 
M 7 HOH B 8 708 17 HOH HOH . 
M 7 HOH B 9 709 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 4 -40.453 -22.904 114.205 1 130.01 ? C1 GOL 601 B 1 
HETATM 2 O O1 GOL . . . I 4 -39.432 -23.707 114.752 1 132.1 ? O1 GOL 601 B 1 
HETATM 3 C C2 GOL . . . I 4 -41.635 -22.861 115.167 1 133.4 ? C2 GOL 601 B 1 
HETATM 4 O O2 GOL . . . I 4 -42.637 -23.753 114.734 1 140.9 ? O2 GOL 601 B 1 
HETATM 5 C C3 GOL . . . I 4 -42.2 -21.448 115.226 1 129 ? C3 GOL 601 B 1 
HETATM 6 O O3 GOL . . . I 4 -41.409 -20.671 116.095 1 125.8 ? O3 GOL 601 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#