data_7KVS
#
_model_server_result.job_id            aeGB7a4C4IbIuZj1q4HRBA 
_model_server_result.datetime_utc      '2024-11-25 20:45:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kvs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":602}' 
#
_entry.id    7KVS 
#
_exptl.entry_id    7KVS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.37 
_cell.angle_gamma         90 
_cell.entry_id            7KVS 
_cell.length_a            154.51 
_cell.length_b            98.22 
_cell.length_c            93.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KVS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 G N30 X74 . A X74 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc4 J FE HEM . B HEM 602 1_555 K N30 X74 . B X74 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 151 n n 
CHA C4D HEM doub 152 n n 
CHA HHA HEM sing 153 n n 
CHB C4A HEM sing 154 n n 
CHB C1B HEM doub 155 n n 
CHB HHB HEM sing 156 n n 
CHC C4B HEM sing 157 n n 
CHC C1C HEM doub 158 n n 
CHC HHC HEM sing 159 n n 
CHD C4C HEM doub 160 n n 
CHD C1D HEM sing 161 n n 
CHD HHD HEM sing 162 n n 
C1A C2A HEM doub 163 n y 
C1A NA HEM sing 164 n y 
C2A C3A HEM sing 165 n y 
C2A CAA HEM sing 166 n n 
C3A C4A HEM doub 167 n y 
C3A CMA HEM sing 168 n n 
C4A NA HEM sing 169 n y 
CMA HMA HEM sing 170 n n 
CMA HMAA HEM sing 171 n n 
CMA HMAB HEM sing 172 n n 
CAA CBA HEM sing 173 n n 
CAA HAA HEM sing 174 n n 
CAA HAAA HEM sing 175 n n 
CBA CGA HEM sing 176 n n 
CBA HBA HEM sing 177 n n 
CBA HBAA HEM sing 178 n n 
CGA O1A HEM doub 179 n n 
CGA O2A HEM sing 180 n n 
C1B C2B HEM sing 181 n n 
C1B NB HEM sing 182 n n 
C2B C3B HEM doub 183 n n 
C2B CMB HEM sing 184 n n 
C3B C4B HEM sing 185 n n 
C3B CAB HEM sing 186 n n 
C4B NB HEM doub 187 n n 
CMB HMB HEM sing 188 n n 
CMB HMBA HEM sing 189 n n 
CMB HMBB HEM sing 190 n n 
CAB CBB HEM doub 191 n n 
CAB HAB HEM sing 192 n n 
CBB HBB HEM sing 193 n n 
CBB HBBA HEM sing 194 n n 
C1C C2C HEM sing 195 n y 
C1C NC HEM sing 196 n y 
C2C C3C HEM doub 197 n y 
C2C CMC HEM sing 198 n n 
C3C C4C HEM sing 199 n y 
C3C CAC HEM sing 200 n n 
C4C NC HEM sing 201 n y 
CMC HMC HEM sing 202 n n 
CMC HMCA HEM sing 203 n n 
CMC HMCB HEM sing 204 n n 
CAC CBC HEM doub 205 n n 
CAC HAC HEM sing 206 n n 
CBC HBC HEM sing 207 n n 
CBC HBCA HEM sing 208 n n 
C1D C2D HEM sing 209 n n 
C1D ND HEM doub 210 n n 
C2D C3D HEM doub 211 n n 
C2D CMD HEM sing 212 n n 
C3D C4D HEM sing 213 n n 
C3D CAD HEM sing 214 n n 
C4D ND HEM sing 215 n n 
CMD HMD HEM sing 216 n n 
CMD HMDA HEM sing 217 n n 
CMD HMDB HEM sing 218 n n 
CAD CBD HEM sing 219 n n 
CAD HAD HEM sing 220 n n 
CAD HADA HEM sing 221 n n 
CBD CGD HEM sing 222 n n 
CBD HBD HEM sing 223 n n 
CBD HBDA HEM sing 224 n n 
CGD O1D HEM doub 225 n n 
CGD O2D HEM sing 226 n n 
O2A H2A HEM sing 227 n n 
O2D H2D HEM sing 228 n n 
FE NA HEM sing 229 n n 
FE NB HEM sing 230 n n 
FE NC HEM sing 231 n n 
FE ND HEM sing 232 n n 
#
_atom_sites.entry_id                     7KVS 
_atom_sites.fract_transf_matrix[1][1]    0.006472 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004427 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010181 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01296 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 500 HEM HEM . 
D 3 SO4 A 1 602 600 SO4 SO4 . 
E 4 GOL A 1 603 601 GOL GOL . 
F 5 EDO A 1 604 650 EDO EDO . 
G 6 X74 A 1 605 700 X74 145 . 
H 5 EDO A 1 606 650 EDO EDO . 
I 4 GOL B 1 601 602 GOL GOL . 
J 2 HEM B 1 602 500 HEM HEM . 
K 6 X74 B 1 603 700 X74 145 . 
L 7 HOH A 1 701 35 HOH HOH . 
L 7 HOH A 2 702 31 HOH HOH . 
L 7 HOH A 3 703 27 HOH HOH . 
L 7 HOH A 4 704 3 HOH HOH . 
L 7 HOH A 5 705 42 HOH HOH . 
L 7 HOH A 6 706 2 HOH HOH . 
L 7 HOH A 7 707 13 HOH HOH . 
L 7 HOH A 8 708 38 HOH HOH . 
L 7 HOH A 9 709 14 HOH HOH . 
L 7 HOH A 10 710 8 HOH HOH . 
L 7 HOH A 11 711 44 HOH HOH . 
L 7 HOH A 12 712 41 HOH HOH . 
L 7 HOH A 13 713 49 HOH HOH . 
L 7 HOH A 14 714 11 HOH HOH . 
L 7 HOH A 15 715 15 HOH HOH . 
L 7 HOH A 16 716 28 HOH HOH . 
L 7 HOH A 17 717 34 HOH HOH . 
L 7 HOH A 18 718 5 HOH HOH . 
L 7 HOH A 19 719 47 HOH HOH . 
L 7 HOH A 20 720 48 HOH HOH . 
L 7 HOH A 21 721 37 HOH HOH . 
L 7 HOH A 22 722 29 HOH HOH . 
L 7 HOH A 23 723 46 HOH HOH . 
L 7 HOH A 24 724 33 HOH HOH . 
L 7 HOH A 25 725 39 HOH HOH . 
L 7 HOH A 26 726 9 HOH HOH . 
L 7 HOH A 27 727 32 HOH HOH . 
L 7 HOH A 28 728 6 HOH HOH . 
L 7 HOH A 29 729 1 HOH HOH . 
L 7 HOH A 30 730 12 HOH HOH . 
L 7 HOH A 31 731 10 HOH HOH . 
L 7 HOH A 32 732 45 HOH HOH . 
L 7 HOH A 33 733 30 HOH HOH . 
L 7 HOH A 34 734 43 HOH HOH . 
L 7 HOH A 35 735 7 HOH HOH . 
L 7 HOH A 36 736 24 HOH HOH . 
L 7 HOH A 37 737 26 HOH HOH . 
L 7 HOH A 38 738 36 HOH HOH . 
M 7 HOH B 1 701 23 HOH HOH . 
M 7 HOH B 2 702 50 HOH HOH . 
M 7 HOH B 3 703 20 HOH HOH . 
M 7 HOH B 4 704 18 HOH HOH . 
M 7 HOH B 5 705 22 HOH HOH . 
M 7 HOH B 6 706 16 HOH HOH . 
M 7 HOH B 7 707 51 HOH HOH . 
M 7 HOH B 8 708 17 HOH HOH . 
M 7 HOH B 9 709 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 2 -30.873 -30.369 128.213 1 71.88 ? CHA HEM 602 B 1 
HETATM 2 C CHB HEM . . . J 2 -26.806 -28.288 126.554 1 81.57 ? CHB HEM 602 B 1 
HETATM 3 C CHC HEM . . . J 2 -28.476 -23.938 127.901 1 95.62 ? CHC HEM 602 B 1 
HETATM 4 C CHD HEM . . . J 2 -32.474 -26.029 129.704 1 87.29 ? CHD HEM 602 B 1 
HETATM 5 C C1A HEM . . . J 2 -29.64 -30.188 127.621 1 82 ? C1A HEM 602 B 1 
HETATM 6 C C2A HEM . . . J 2 -28.835 -31.217 126.992 1 83.26 ? C2A HEM 602 B 1 
HETATM 7 C C3A HEM . . . J 2 -27.713 -30.642 126.543 1 79.37 ? C3A HEM 602 B 1 
HETATM 8 C C4A HEM . . . J 2 -27.769 -29.228 126.857 1 77.03 ? C4A HEM 602 B 1 
HETATM 9 C CMA HEM . . . J 2 -26.552 -31.346 125.809 1 75.91 ? CMA HEM 602 B 1 
HETATM 10 C CAA HEM . . . J 2 -29.216 -32.713 126.896 1 89.44 ? CAA HEM 602 B 1 
HETATM 11 C CBA HEM . . . J 2 -29.52 -33.139 125.465 1 94.17 ? CBA HEM 602 B 1 
HETATM 12 C CGA HEM . . . J 2 -29.726 -34.63 125.439 1 88.77 ? CGA HEM 602 B 1 
HETATM 13 O O1A HEM . . . J 2 -29.832 -35.204 124.325 1 75.05 ? O1A HEM 602 B 1 
HETATM 14 O O2A HEM . . . J 2 -29.782 -35.246 126.535 1 71.21 ? O2A HEM 602 B 1 
HETATM 15 C C1B HEM . . . J 2 -26.914 -26.924 126.734 1 83.51 ? C1B HEM 602 B 1 
HETATM 16 C C2B HEM . . . J 2 -25.974 -25.924 126.267 1 81.35 ? C2B HEM 602 B 1 
HETATM 17 C C3B HEM . . . J 2 -26.435 -24.713 126.64 1 93.39 ? C3B HEM 602 B 1 
HETATM 18 C C4B HEM . . . J 2 -27.682 -24.923 127.353 1 94.27 ? C4B HEM 602 B 1 
HETATM 19 C CMB HEM . . . J 2 -24.687 -26.273 125.483 1 84.58 ? CMB HEM 602 B 1 
HETATM 20 C CAB HEM . . . J 2 -25.837 -23.299 126.409 1 97.48 ? CAB HEM 602 B 1 
HETATM 21 C CBB HEM . . . J 2 -24.705 -23.041 125.744 1 94.05 ? CBB HEM 602 B 1 
HETATM 22 C C1C HEM . . . J 2 -29.728 -24.111 128.452 1 100.06 ? C1C HEM 602 B 1 
HETATM 23 C C2C HEM . . . J 2 -30.648 -23.057 128.824 1 111.44 ? C2C HEM 602 B 1 
HETATM 24 C C3C HEM . . . J 2 -31.755 -23.614 129.323 1 99.48 ? C3C HEM 602 B 1 
HETATM 25 C C4C HEM . . . J 2 -31.581 -25.061 129.287 1 88.51 ? C4C HEM 602 B 1 
HETATM 26 C CMC HEM . . . J 2 -30.39 -21.543 128.671 1 118.55 ? CMC HEM 602 B 1 
HETATM 27 C CAC HEM . . . J 2 -32.971 -22.801 129.833 1 108.96 ? CAC HEM 602 B 1 
HETATM 28 C CBC HEM . . . J 2 -34.063 -23.373 130.351 1 119.04 ? CBC HEM 602 B 1 
HETATM 29 C C1D HEM . . . J 2 -32.371 -27.389 129.5 1 89.42 ? C1D HEM 602 B 1 
HETATM 30 C C2D HEM . . . J 2 -33.279 -28.402 130.001 1 84.12 ? C2D HEM 602 B 1 
HETATM 31 C C3D HEM . . . J 2 -32.838 -29.596 129.592 1 85.89 ? C3D HEM 602 B 1 
HETATM 32 C C4D HEM . . . J 2 -31.633 -29.388 128.814 1 74.13 ? C4D HEM 602 B 1 
HETATM 33 C CMD HEM . . . J 2 -34.534 -28.138 130.86 1 86.37 ? CMD HEM 602 B 1 
HETATM 34 C CAD HEM . . . J 2 -33.49 -30.965 129.885 1 92.87 ? CAD HEM 602 B 1 
HETATM 35 C CBD HEM . . . J 2 -34.677 -31.176 128.95 1 102.25 ? CBD HEM 602 B 1 
HETATM 36 C CGD HEM . . . J 2 -35.231 -32.565 129.132 1 113.15 ? CGD HEM 602 B 1 
HETATM 37 O O1D HEM . . . J 2 -36.298 -32.867 128.538 1 112.48 ? O1D HEM 602 B 1 
HETATM 38 O O2D HEM . . . J 2 -34.608 -33.369 129.872 1 123.06 ? O2D HEM 602 B 1 
HETATM 39 N NA HEM . . . J 2 -28.961 -28.989 127.514 1 77.18 ? NA HEM 602 B 1 
HETATM 40 N NB HEM . . . J 2 -27.942 -26.278 127.391 1 83.86 ? NB HEM 602 B 1 
HETATM 41 N NC HEM . . . J 2 -30.332 -25.319 128.749 1 80.75 ? NC HEM 602 B 1 
HETATM 42 N ND HEM . . . J 2 -31.38 -28.029 128.78 1 79.52 ? ND HEM 602 B 1 
HETATM 43 FE FE HEM . . . J 2 -29.7 -27.139 128.023 1 96.56 ? FE HEM 602 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#