data_7KVS
#
_model_server_result.job_id            mIMjKTw-S91zpQbABjq7Nw 
_model_server_result.datetime_utc      '2024-10-11 02:16:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kvs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":605}' 
#
_entry.id    7KVS 
#
_exptl.entry_id    7KVS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              583.783 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.37 
_cell.angle_gamma         90 
_cell.entry_id            7KVS 
_cell.length_a            154.51 
_cell.length_b            98.22 
_cell.length_c            93.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KVS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 G N30 X74 . A X74 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc4 J FE HEM . B HEM 602 1_555 K N30 X74 . B X74 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'C35 H41 N3 O3 S' 
_chem_comp.formula_weight    583.783 
_chem_comp.id                X74 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 X74 sing 484 n n 
C04 C02 X74 sing 485 n n 
C03 C02 X74 sing 486 n n 
C02 O05 X74 sing 487 n n 
C16 C15 X74 doub 488 n y 
C16 C17 X74 sing 489 n y 
C15 C14 X74 sing 490 n y 
C17 C18 X74 doub 491 n y 
C36 C35 X74 doub 492 n y 
C36 C37 X74 sing 493 n y 
O05 C06 X74 sing 494 n n 
C35 C34 X74 sing 495 n y 
C37 C38 X74 doub 496 n y 
C14 C19 X74 doub 497 n y 
C14 C13 X74 sing 498 n n 
C18 C19 X74 sing 499 n y 
C06 N08 X74 sing 500 n n 
C06 O07 X74 doub 501 n n 
S11 C12 X74 sing 502 n n 
S11 C10 X74 sing 503 n n 
N08 C09 X74 sing 504 n n 
C38 C39 X74 sing 505 n y 
C32 C33 X74 sing 506 n n 
C32 C09 X74 sing 507 n n 
C34 C39 X74 doub 508 n y 
C34 C33 X74 sing 509 n y 
C13 C12 X74 sing 510 n n 
C12 C20 X74 sing 511 n n 
C28 C27 X74 doub 512 n y 
C28 C29 X74 sing 513 n y 
C39 C40 X74 sing 514 n y 
C27 C26 X74 sing 515 n y 
C33 C42 X74 doub 516 n y 
C09 C10 X74 sing 517 n n 
C20 N22 X74 sing 518 n n 
C20 O21 X74 doub 519 n n 
C29 N30 X74 doub 520 n y 
N22 C23 X74 sing 521 n n 
C42 C41 X74 sing 522 n y 
C26 C25 X74 sing 523 n n 
C26 C31 X74 doub 524 n y 
C40 C41 X74 doub 525 n y 
C25 C24 X74 sing 526 n n 
C23 C24 X74 sing 527 n n 
N30 C31 X74 sing 528 n y 
C01 H1 X74 sing 529 n n 
C01 H2 X74 sing 530 n n 
C01 H3 X74 sing 531 n n 
C03 H4 X74 sing 532 n n 
C03 H5 X74 sing 533 n n 
C03 H6 X74 sing 534 n n 
C04 H7 X74 sing 535 n n 
C04 H8 X74 sing 536 n n 
C04 H9 X74 sing 537 n n 
C09 H10 X74 sing 538 n n 
C10 H11 X74 sing 539 n n 
C10 H12 X74 sing 540 n n 
C12 H13 X74 sing 541 n n 
C13 H14 X74 sing 542 n n 
C13 H15 X74 sing 543 n n 
C15 H16 X74 sing 544 n n 
C16 H17 X74 sing 545 n n 
C17 H18 X74 sing 546 n n 
C18 H19 X74 sing 547 n n 
C19 H20 X74 sing 548 n n 
C23 H21 X74 sing 549 n n 
C23 H22 X74 sing 550 n n 
C24 H23 X74 sing 551 n n 
C24 H24 X74 sing 552 n n 
C25 H25 X74 sing 553 n n 
C25 H26 X74 sing 554 n n 
C27 H27 X74 sing 555 n n 
C28 H28 X74 sing 556 n n 
C29 H29 X74 sing 557 n n 
C31 H30 X74 sing 558 n n 
C32 H31 X74 sing 559 n n 
C32 H32 X74 sing 560 n n 
C35 H33 X74 sing 561 n n 
C36 H34 X74 sing 562 n n 
C37 H35 X74 sing 563 n n 
C38 H36 X74 sing 564 n n 
C40 H37 X74 sing 565 n n 
C41 H38 X74 sing 566 n n 
C42 H39 X74 sing 567 n n 
N08 H40 X74 sing 568 n n 
N22 H41 X74 sing 569 n n 
#
_atom_sites.entry_id                     7KVS 
_atom_sites.fract_transf_matrix[1][1]    0.006472 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004427 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010181 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01296 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 500 HEM HEM . 
D 3 SO4 A 1 602 600 SO4 SO4 . 
E 4 GOL A 1 603 601 GOL GOL . 
F 5 EDO A 1 604 650 EDO EDO . 
G 6 X74 A 1 605 700 X74 145 . 
H 5 EDO A 1 606 650 EDO EDO . 
I 4 GOL B 1 601 602 GOL GOL . 
J 2 HEM B 1 602 500 HEM HEM . 
K 6 X74 B 1 603 700 X74 145 . 
L 7 HOH A 1 701 35 HOH HOH . 
L 7 HOH A 2 702 31 HOH HOH . 
L 7 HOH A 3 703 27 HOH HOH . 
L 7 HOH A 4 704 3 HOH HOH . 
L 7 HOH A 5 705 42 HOH HOH . 
L 7 HOH A 6 706 2 HOH HOH . 
L 7 HOH A 7 707 13 HOH HOH . 
L 7 HOH A 8 708 38 HOH HOH . 
L 7 HOH A 9 709 14 HOH HOH . 
L 7 HOH A 10 710 8 HOH HOH . 
L 7 HOH A 11 711 44 HOH HOH . 
L 7 HOH A 12 712 41 HOH HOH . 
L 7 HOH A 13 713 49 HOH HOH . 
L 7 HOH A 14 714 11 HOH HOH . 
L 7 HOH A 15 715 15 HOH HOH . 
L 7 HOH A 16 716 28 HOH HOH . 
L 7 HOH A 17 717 34 HOH HOH . 
L 7 HOH A 18 718 5 HOH HOH . 
L 7 HOH A 19 719 47 HOH HOH . 
L 7 HOH A 20 720 48 HOH HOH . 
L 7 HOH A 21 721 37 HOH HOH . 
L 7 HOH A 22 722 29 HOH HOH . 
L 7 HOH A 23 723 46 HOH HOH . 
L 7 HOH A 24 724 33 HOH HOH . 
L 7 HOH A 25 725 39 HOH HOH . 
L 7 HOH A 26 726 9 HOH HOH . 
L 7 HOH A 27 727 32 HOH HOH . 
L 7 HOH A 28 728 6 HOH HOH . 
L 7 HOH A 29 729 1 HOH HOH . 
L 7 HOH A 30 730 12 HOH HOH . 
L 7 HOH A 31 731 10 HOH HOH . 
L 7 HOH A 32 732 45 HOH HOH . 
L 7 HOH A 33 733 30 HOH HOH . 
L 7 HOH A 34 734 43 HOH HOH . 
L 7 HOH A 35 735 7 HOH HOH . 
L 7 HOH A 36 736 24 HOH HOH . 
L 7 HOH A 37 737 26 HOH HOH . 
L 7 HOH A 38 738 36 HOH HOH . 
M 7 HOH B 1 701 23 HOH HOH . 
M 7 HOH B 2 702 50 HOH HOH . 
M 7 HOH B 3 703 20 HOH HOH . 
M 7 HOH B 4 704 18 HOH HOH . 
M 7 HOH B 5 705 22 HOH HOH . 
M 7 HOH B 6 706 16 HOH HOH . 
M 7 HOH B 7 707 51 HOH HOH . 
M 7 HOH B 8 708 17 HOH HOH . 
M 7 HOH B 9 709 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 X74 . . . G 6 -35.757 -12.692 83.105 1 156.39 ? C01 X74 605 A 1 
HETATM 2 C C02 X74 . . . G 6 -35.842 -13.845 84.145 1 164.53 ? C02 X74 605 A 1 
HETATM 3 C C03 X74 . . . G 6 -37.19 -14.542 83.92 1 169.06 ? C03 X74 605 A 1 
HETATM 4 C C04 X74 . . . G 6 -34.676 -14.806 83.894 1 164.59 ? C04 X74 605 A 1 
HETATM 5 C C06 X74 . . . G 6 -35.365 -14.088 86.583 1 164.04 ? C06 X74 605 A 1 
HETATM 6 C C09 X74 . . . G 6 -36.286 -16.15 87.887 1 151.29 ? C09 X74 605 A 1 
HETATM 7 C C10 X74 . . . G 6 -37.638 -16.764 88.331 1 132.21 ? C10 X74 605 A 1 
HETATM 8 C C12 X74 . . . G 6 -38.798 -19.409 87.303 1 107.65 ? C12 X74 605 A 1 
HETATM 9 C C13 X74 . . . G 6 -40.296 -19.732 87.204 1 105.01 ? C13 X74 605 A 1 
HETATM 10 C C14 X74 . . . G 6 -40.621 -21.021 86.488 1 105.77 ? C14 X74 605 A 1 
HETATM 11 C C15 X74 . . . G 6 -40.322 -21.275 85.154 1 120.78 ? C15 X74 605 A 1 
HETATM 12 C C16 X74 . . . G 6 -40.621 -22.46 84.495 1 135.07 ? C16 X74 605 A 1 
HETATM 13 C C17 X74 . . . G 6 -41.261 -23.471 85.207 1 131.19 ? C17 X74 605 A 1 
HETATM 14 C C18 X74 . . . G 6 -41.577 -23.262 86.524 1 110.09 ? C18 X74 605 A 1 
HETATM 15 C C19 X74 . . . G 6 -41.269 -22.07 87.163 1 104.2 ? C19 X74 605 A 1 
HETATM 16 C C20 X74 . . . G 6 -38.206 -19.948 88.574 1 112.5 ? C20 X74 605 A 1 
HETATM 17 C C23 X74 . . . G 6 -36.366 -21.184 89.852 1 104.37 ? C23 X74 605 A 1 
HETATM 18 C C24 X74 . . . G 6 -36.872 -22.6 90.279 1 93.52 ? C24 X74 605 A 1 
HETATM 19 C C25 X74 . . . G 6 -36.397 -23.826 89.481 1 91.32 ? C25 X74 605 A 1 
HETATM 20 C C26 X74 . . . G 6 -34.914 -23.957 89.144 1 89.08 ? C26 X74 605 A 1 
HETATM 21 C C27 X74 . . . G 6 -34.412 -23.803 87.847 1 87.01 ? C27 X74 605 A 1 
HETATM 22 C C28 X74 . . . G 6 -33.052 -23.92 87.553 1 90.98 ? C28 X74 605 A 1 
HETATM 23 C C29 X74 . . . G 6 -32.19 -24.199 88.586 1 96.28 ? C29 X74 605 A 1 
HETATM 24 C C31 X74 . . . G 6 -33.915 -24.236 90.093 1 80.01 ? C31 X74 605 A 1 
HETATM 25 C C32 X74 . . . G 6 -35.456 -17.286 87.132 1 156.95 ? C32 X74 605 A 1 
HETATM 26 C C33 X74 . . . G 6 -34.323 -18.026 87.861 1 158.68 ? C33 X74 605 A 1 
HETATM 27 C C34 X74 . . . G 6 -33.073 -18.211 87.185 1 159.92 ? C34 X74 605 A 1 
HETATM 28 C C35 X74 . . . G 6 -32.814 -17.75 85.862 1 170.31 ? C35 X74 605 A 1 
HETATM 29 C C36 X74 . . . G 6 -31.643 -17.921 85.22 1 174.95 ? C36 X74 605 A 1 
HETATM 30 C C37 X74 . . . G 6 -30.597 -18.59 85.872 1 173.83 ? C37 X74 605 A 1 
HETATM 31 C C38 X74 . . . G 6 -30.778 -19.054 87.123 1 162.72 ? C38 X74 605 A 1 
HETATM 32 C C39 X74 . . . G 6 -31.993 -18.9 87.846 1 155.41 ? C39 X74 605 A 1 
HETATM 33 C C40 X74 . . . G 6 -32.222 -19.377 89.171 1 151.53 ? C40 X74 605 A 1 
HETATM 34 C C41 X74 . . . G 6 -33.397 -19.194 89.795 1 151.41 ? C41 X74 605 A 1 
HETATM 35 C C42 X74 . . . G 6 -34.462 -18.507 89.135 1 153.28 ? C42 X74 605 A 1 
HETATM 36 N N08 X74 . . . G 6 -36.432 -14.91 87.071 1 164.4 ? N08 X74 605 A 1 
HETATM 37 N N22 X74 . . . G 6 -37.015 -20.614 88.66 1 112.87 ? N22 X74 605 A 1 
HETATM 38 N N30 X74 . . . G 6 -32.583 -24.363 89.865 1 80.67 ? N30 X74 605 A 1 
HETATM 39 O O05 X74 . . . G 6 -35.625 -13.283 85.464 1 167.12 ? O05 X74 605 A 1 
HETATM 40 O O07 X74 . . . G 6 -34.277 -14.044 87.085 1 158.71 ? O07 X74 605 A 1 
HETATM 41 O O21 X74 . . . G 6 -38.869 -19.778 89.649 1 114.57 ? O21 X74 605 A 1 
HETATM 42 S S11 X74 . . . G 6 -38.492 -17.626 86.954 1 114.23 ? S11 X74 605 A 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           42 
#