data_7KW7
#
_model_server_result.job_id            XF_9vDYDA_AoaUAfXSdFcw 
_model_server_result.datetime_utc      '2024-10-19 03:35:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kw7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":701}' 
#
_entry.id    7KW7 
#
_exptl.entry_id    7KW7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OE1 GLU 175 C GLU 175 1_555 H MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.714 ? 
metalc ? metalc2 C OD1 ASP 199 C ASP 199 1_555 H MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? 
metalc ? metalc3 D OE2 GLU 175 D GLU 175 1_555 K MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? 
metalc ? metalc4 J O2B ADP . D ADP 701 1_555 K MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7KW7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 ADP C 1 701 642 ADP ADP . 
H 6 MG C 1 702 643 MG MG . 
I 7 K C 1 703 644 K K . 
J 5 ADP D 1 701 642 ADP ADP . 
K 6 MG D 1 702 643 MG MG . 
L 7 K D 1 703 644 K K . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . G 5 126.398 211.503 198.69 1 132.02 ? PB ADP 701 C 1 
HETATM 2 O O1B ADP . . . G 5 127.397 210.821 197.808 1 132.21 ? O1B ADP 701 C 1 
HETATM 3 O O2B ADP . . . G 5 125.434 210.548 199.42 1 131.31 ? O2B ADP 701 C 1 
HETATM 4 O O3B ADP . . . G 5 127.051 212.461 199.678 1 138.42 ? O3B ADP 701 C 1 
HETATM 5 P PA ADP . . . G 5 125.545 213.573 196.889 1 124.28 ? PA ADP 701 C 1 
HETATM 6 O O1A ADP . . . G 5 124.572 213.385 195.8 1 131.91 ? O1A ADP 701 C 1 
HETATM 7 O O2A ADP . . . G 5 127.001 213.866 196.624 1 133.59 ? O2A ADP 701 C 1 
HETATM 8 O O3A ADP . . . G 5 125.362 212.287 197.808 1 135.2 ? O3A ADP 701 C 1 
HETATM 9 O O5' ADP . . . G 5 125.04 214.694 197.971 1 136.41 ? O5' ADP 701 C 1 
HETATM 10 C C5' ADP . . . G 5 123.876 215.595 197.825 1 142.22 ? C5' ADP 701 C 1 
HETATM 11 C C4' ADP . . . G 5 123.892 216.648 198.964 1 146.16 ? C4' ADP 701 C 1 
HETATM 12 O O4' ADP . . . G 5 124.13 217.908 198.339 1 160.86 ? O4' ADP 701 C 1 
HETATM 13 C C3' ADP . . . G 5 122.625 216.795 199.844 1 142.16 ? C3' ADP 701 C 1 
HETATM 14 O O3' ADP . . . G 5 123.017 216.794 201.259 1 159.27 ? O3' ADP 701 C 1 
HETATM 15 C C2' ADP . . . G 5 122.05 218.157 199.429 1 155.27 ? C2' ADP 701 C 1 
HETATM 16 O O2' ADP . . . G 5 121.314 218.891 200.435 1 176.45 ? O2' ADP 701 C 1 
HETATM 17 C C1' ADP . . . G 5 123.311 218.902 198.932 1 163.22 ? C1' ADP 701 C 1 
HETATM 18 N N9 ADP . . . G 5 123.036 219.934 197.883 1 171.17 ? N9 ADP 701 C 1 
HETATM 19 C C8 ADP . . . G 5 122.511 219.745 196.609 1 176.72 ? C8 ADP 701 C 1 
HETATM 20 N N7 ADP . . . G 5 122.402 220.923 195.944 1 183.45 ? N7 ADP 701 C 1 
HETATM 21 C C5 ADP . . . G 5 122.849 221.883 196.774 1 186.01 ? C5 ADP 701 C 1 
HETATM 22 C C6 ADP . . . G 5 123.01 223.375 196.693 1 199.58 ? C6 ADP 701 C 1 
HETATM 23 N N6 ADP . . . G 5 122.637 224 195.579 1 201.77 ? N6 ADP 701 C 1 
HETATM 24 N N1 ADP . . . G 5 123.521 224.064 197.784 1 201.98 ? N1 ADP 701 C 1 
HETATM 25 C C2 ADP . . . G 5 123.892 223.412 198.944 1 192.43 ? C2 ADP 701 C 1 
HETATM 26 N N3 ADP . . . G 5 123.788 222.027 199.107 1 176.61 ? N3 ADP 701 C 1 
HETATM 27 C C4 ADP . . . G 5 123.272 221.245 198.052 1 173.29 ? C4 ADP 701 C 1 
HETATM 28 H "H5'1" ADP . . . G 5 123.048 215.082 197.836 1 170.67 ? "H5'1" ADP 701 C 1 
HETATM 29 H "H5'2" ADP . . . G 5 123.893 216.047 196.949 1 170.67 ? "H5'2" ADP 701 C 1 
HETATM 30 H H4' ADP . . . G 5 124.631 216.407 199.561 1 175.39 ? H4' ADP 701 C 1 
HETATM 31 H H3' ADP . . . G 5 121.962 216.093 199.745 1 170.59 ? H3' ADP 701 C 1 
HETATM 32 H HO3' ADP . . . G 5 123.411 217.521 201.454 1 191.12 ? HO3' ADP 701 C 1 
HETATM 33 H H2' ADP . . . G 5 121.342 218.083 198.757 1 186.32 ? H2' ADP 701 C 1 
HETATM 34 H HO2' ADP . . . G 5 121.006 218.382 201.049 1 211.74 ? HO2' ADP 701 C 1 
HETATM 35 H H1' ADP . . . G 5 123.739 219.36 199.688 1 195.86 ? H1' ADP 701 C 1 
HETATM 36 H H8 ADP . . . G 5 122.258 218.882 196.237 1 212.07 ? H8 ADP 701 C 1 
HETATM 37 H HN61 ADP . . . G 5 122.743 224.861 195.573 1 242.12 ? HN61 ADP 701 C 1 
HETATM 38 H HN62 ADP . . . G 5 121.945 223.692 195.196 1 242.12 ? HN62 ADP 701 C 1 
HETATM 39 H H2 ADP . . . G 5 124.245 223.942 199.668 1 230.91 ? H2 ADP 701 C 1 
#
_model_server_stats.io_time_ms              110 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    113 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           39 
#