data_7KW7
#
_model_server_result.job_id            K-IgFQpzjon94M-HGgyBJg 
_model_server_result.datetime_utc      '2025-08-31 17:49:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kw7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":701}' 
#
_entry.id    7KW7 
#
_exptl.entry_id    7KW7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OE1 GLU 175 C GLU 175 1_555 H MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.714 ? 
metalc ? metalc2 C OD1 ASP 199 C ASP 199 1_555 H MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? 
metalc ? metalc3 D OE2 GLU 175 D GLU 175 1_555 K MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? 
metalc ? metalc4 J O2B ADP . D ADP 701 1_555 K MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7KW7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 ADP C 1 701 642 ADP ADP . 
H 6 MG C 1 702 643 MG MG . 
I 7 K C 1 703 644 K K . 
J 5 ADP D 1 701 642 ADP ADP . 
K 6 MG D 1 702 643 MG MG . 
L 7 K D 1 703 644 K K . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . J 5 173.084 126.458 144.086 1 67.57 ? PB ADP 701 D 1 
HETATM 2 O O1B ADP . . . J 5 173.13 126.337 142.565 1 67.31 ? O1B ADP 701 D 1 
HETATM 3 O O2B ADP . . . J 5 173.538 127.849 144.593 1 81.83 ? O2B ADP 701 D 1 
HETATM 4 O O3B ADP . . . J 5 171.759 126.034 144.639 1 65.28 ? O3B ADP 701 D 1 
HETATM 5 P PA ADP . . . J 5 174.001 123.775 144.806 1 62.81 ? PA ADP 701 D 1 
HETATM 6 O O1A ADP . . . J 5 172.593 123.417 144.855 1 66.94 ? O1A ADP 701 D 1 
HETATM 7 O O2A ADP . . . J 5 174.97 123.297 145.861 1 73.31 ? O2A ADP 701 D 1 
HETATM 8 O O3A ADP . . . J 5 174.104 125.375 144.626 1 72.33 ? O3A ADP 701 D 1 
HETATM 9 O O5' ADP . . . J 5 174.695 123.15 143.468 1 67.47 ? O5' ADP 701 D 1 
HETATM 10 C C5' ADP . . . J 5 174.855 121.688 143.246 1 74.76 ? C5' ADP 701 D 1 
HETATM 11 C C4' ADP . . . J 5 176.026 121.394 142.278 1 70.92 ? C4' ADP 701 D 1 
HETATM 12 O O4' ADP . . . J 5 177.006 120.674 143.021 1 74.14 ? O4' ADP 701 D 1 
HETATM 13 C C3' ADP . . . J 5 175.737 120.56 141.016 1 65.26 ? C3' ADP 701 D 1 
HETATM 14 O O3' ADP . . . J 5 176.564 121.111 139.944 1 75.53 ? O3' ADP 701 D 1 
HETATM 15 C C2' ADP . . . J 5 176.178 119.143 141.421 1 65.37 ? C2' ADP 701 D 1 
HETATM 16 O O2' ADP . . . J 5 176.528 118.248 140.341 1 78.84 ? O2' ADP 701 D 1 
HETATM 17 C C1' ADP . . . J 5 177.354 119.452 142.369 1 68.25 ? C1' ADP 701 D 1 
HETATM 18 N N9 ADP . . . J 5 177.589 118.44 143.45 1 86.59 ? N9 ADP 701 D 1 
HETATM 19 C C8 ADP . . . J 5 176.67 117.942 144.364 1 94.56 ? C8 ADP 701 D 1 
HETATM 20 N N7 ADP . . . J 5 177.248 117.038 145.195 1 93.56 ? N7 ADP 701 D 1 
HETATM 21 C C5 ADP . . . J 5 178.535 116.935 144.838 1 84.83 ? C5 ADP 701 D 1 
HETATM 22 C C6 ADP . . . J 5 179.699 116.138 145.331 1 76.32 ? C6 ADP 701 D 1 
HETATM 23 N N6 ADP . . . J 5 179.481 115.306 146.348 1 83.38 ? N6 ADP 701 D 1 
HETATM 24 N N1 ADP . . . J 5 180.935 116.287 144.721 1 78.05 ? N1 ADP 701 D 1 
HETATM 25 C C2 ADP . . . J 5 181.121 117.159 143.65 1 79.41 ? C2 ADP 701 D 1 
HETATM 26 N N3 ADP . . . J 5 180.078 117.937 143.124 1 83.36 ? N3 ADP 701 D 1 
HETATM 27 C C4 ADP . . . J 5 178.784 117.848 143.691 1 86.9 ? C4 ADP 701 D 1 
HETATM 28 H "H5'1" ADP . . . J 5 174.024 121.326 142.894 1 89.72 ? "H5'1" ADP 701 D 1 
HETATM 29 H "H5'2" ADP . . . J 5 175.008 121.202 144.088 1 89.72 ? "H5'2" ADP 701 D 1 
HETATM 30 H H4' ADP . . . J 5 176.364 122.268 141.979 1 85.11 ? H4' ADP 701 D 1 
HETATM 31 H H3' ADP . . . J 5 174.818 120.568 140.69 1 78.31 ? H3' ADP 701 D 1 
HETATM 32 H HO3' ADP . . . J 5 177.37 121.156 140.211 1 90.64 ? HO3' ADP 701 D 1 
HETATM 33 H H2' ADP . . . J 5 175.458 118.622 141.829 1 78.44 ? H2' ADP 701 D 1 
HETATM 34 H HO2' ADP . . . J 5 175.848 117.754 140.087 1 94.61 ? HO2' ADP 701 D 1 
HETATM 35 H H1' ADP . . . J 5 178.18 119.507 141.844 1 81.9 ? H1' ADP 701 D 1 
HETATM 36 H H8 ADP . . . J 5 175.736 118.202 144.41 1 113.48 ? H8 ADP 701 D 1 
HETATM 37 H HN61 ADP . . . J 5 178.738 115.376 146.777 1 100.06 ? HN61 ADP 701 D 1 
HETATM 38 H HN62 ADP . . . J 5 179.937 114.585 146.397 1 100.06 ? HN62 ADP 701 D 1 
HETATM 39 H H2 ADP . . . J 5 182.003 117.236 143.253 1 95.29 ? H2 ADP 701 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    60 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          50 
_model_server_stats.element_count           39 
#