data_7KWO # _model_server_result.job_id QONpNiAQvZGOPOAFgse4DA _model_server_result.datetime_utc '2024-10-26 02:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1701}' # _entry.id 7KWO # _exptl.entry_id 7KWO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KWO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 I N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG A 3444 NAG 3 n C NAG 2 B 2 NAG A 3445 NAG 3 n C BMA 3 B 3 BMA A 3446 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 153 1_555 A SG CYS 198 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 267 A CYS 248 1_555 A SG CYS 348 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 547 A CYS 528 1_555 A SG CYS 573 A CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 649 A CYS 630 1_555 A SG CYS 730 A CYS 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 1239 A CYS 1832 1_555 A SG CYS 1265 A CYS 1858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 1428 A CYS 2021 1_555 A SG CYS 1576 A CYS 2169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 A SG CYS 1581 A CYS 2174 1_555 A SG CYS 1733 A CYS 2326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 767 V CYS 767 1_555 B SG CYS 808 V CYS 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 776 V CYS 776 1_555 B SG CYS 804 V CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? disulf ? disulf10 B SG CYS 788 V CYS 788 1_555 B SG CYS 799 V CYS 799 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 B SG CYS 792 V CYS 792 1_555 B SG CYS 827 V CYS 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 B SG CYS 810 V CYS 810 1_555 B SG CYS 821 V CYS 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 B SG CYS 829 V CYS 829 1_555 B SG CYS 851 V CYS 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 B SG CYS 846 V CYS 846 1_555 B SG CYS 863 V CYS 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 849 V CYS 849 1_555 B SG CYS 858 V CYS 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 B SG CYS 867 V CYS 867 1_555 B SG CYS 996 V CYS 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 B SG CYS 889 V CYS 889 1_555 B SG CYS 1031 V CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 B SG CYS 898 V CYS 898 1_555 B SG CYS 993 V CYS 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 B SG CYS 914 V CYS 914 1_555 B SG CYS 921 V CYS 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 B SG CYS 1046 V CYS 1046 1_555 B SG CYS 1089 V CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 B SG CYS 1060 V CYS 1060 1_555 B SG CYS 1084 V CYS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf22 B SG CYS 1071 V CYS 1071 1_555 B SG CYS 1111 V CYS 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf23 B SG CYS 1091 V CYS 1091 1_555 B SG CYS 1097 V CYS 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf24 B SG CYS 1101 V CYS 1101 1_555 B SG CYS 1126 V CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf25 B SG CYS 1130 V CYS 1130 1_555 B SG CYS 1173 V CYS 1173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf26 B SG CYS 1149 V CYS 1149 1_555 B SG CYS 1169 V CYS 1169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf27 B SG CYS 1153 V CYS 1153 1_555 B SG CYS 1165 V CYS 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf28 B SG CYS 1157 V CYS 1157 1_555 B SG CYS 1196 V CYS 1196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf29 B SG CYS 1177 V CYS 1177 1_555 B SG CYS 1190 V CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf30 B SG CYS 1199 V CYS 1199 1_555 B SG CYS 1227 V CYS 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf31 B SG CYS 1222 V CYS 1222 1_555 B SG CYS 1237 V CYS 1237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf32 B SG CYS 1225 V CYS 1225 1_555 B SG CYS 1234 V CYS 1234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 258 A ASN 239 1_555 D C1 NAG . A NAG 2601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A C ILE 1086 A ILE 1679 1_555 A N TYS 1087 A TYS 1680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C TYS 1087 A TYS 1680 1_555 A N ASP 1088 A ASP 1681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A ND2 ASN 1217 A ASN 1810 1_555 E C1 NAG . A NAG 2602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 A ND2 ASN 1525 A ASN 2118 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 857 V ASN 857 1_555 I C1 NAG . V NAG 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 C O4 NAG . B NAG 2 1_555 C C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O LYS 126 A LYS 107 1_555 F CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 A O GLU 141 A GLU 122 1_555 F CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc3 A OD1 ASP 144 A ASP 125 1_555 F CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 A OD2 ASP 144 A ASP 125 1_555 F CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc5 A OD1 ASP 145 A ASP 126 1_555 F CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc6 A ND1 HIS 286 A HIS 267 1_555 G ZN ZN . A ZN 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 A SG CYS 329 A CYS 310 1_555 G ZN ZN . A ZN 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc8 A ND1 HIS 334 A HIS 315 1_555 G ZN ZN . A ZN 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 A SG CYS 1407 A CYS 2000 1_555 H CU CU . A CU 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc10 A ND1 HIS 1412 A HIS 2005 1_555 H CU CU . A CU 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc11 B OD2 ASP 879 V ASP 879 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc12 B OD1 ASN 998 V ASN 998 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc13 B OD1 ASP 1000 V ASP 1000 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc14 B O ILE 1002 V ILE 1002 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc15 B OD1 ASN 1005 V ASN 1005 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc16 B OD1 ASP 1006 V ASP 1006 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 259 n n C1 O1 NAG sing 260 n n C1 O5 NAG sing 261 n n C1 H1 NAG sing 262 n n C2 C3 NAG sing 263 n n C2 N2 NAG sing 264 n n C2 H2 NAG sing 265 n n C3 C4 NAG sing 266 n n C3 O3 NAG sing 267 n n C3 H3 NAG sing 268 n n C4 C5 NAG sing 269 n n C4 O4 NAG sing 270 n n C4 H4 NAG sing 271 n n C5 C6 NAG sing 272 n n C5 O5 NAG sing 273 n n C5 H5 NAG sing 274 n n C6 O6 NAG sing 275 n n C6 H61 NAG sing 276 n n C6 H62 NAG sing 277 n n C7 C8 NAG sing 278 n n C7 N2 NAG sing 279 n n C7 O7 NAG doub 280 n n C8 H81 NAG sing 281 n n C8 H82 NAG sing 282 n n C8 H83 NAG sing 283 n n N2 HN2 NAG sing 284 n n O1 HO1 NAG sing 285 n n O3 HO3 NAG sing 286 n n O4 HO4 NAG sing 287 n n O6 HO6 NAG sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7KWO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 2601 2831 NAG NAG . E 4 NAG A 1 2602 3447 NAG NAG . F 5 CA A 1 2603 2830 CA CA . G 6 ZN A 1 2604 2831 ZN ZN . H 7 CU A 1 2605 2832 CU CU . I 4 NAG V 1 1701 1653 NAG NAG . J 5 CA V 1 1702 1718 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 4 205.057 152.564 189.103 1 75.21 ? C1 NAG 1701 V 1 HETATM 2 C C2 NAG . . . I 4 206.221 152.025 189.939 1 75.21 ? C2 NAG 1701 V 1 HETATM 3 C C3 NAG . . . I 4 206.459 150.547 189.636 1 75.21 ? C3 NAG 1701 V 1 HETATM 4 C C4 NAG . . . I 4 205.169 149.755 189.8 1 75.21 ? C4 NAG 1701 V 1 HETATM 5 C C5 NAG . . . I 4 204.059 150.38 188.96 1 75.21 ? C5 NAG 1701 V 1 HETATM 6 C C6 NAG . . . I 4 202.719 149.711 189.161 1 75.21 ? C6 NAG 1701 V 1 HETATM 7 C C7 NAG . . . I 4 208.072 152.918 188.56 1 75.21 ? C7 NAG 1701 V 1 HETATM 8 C C8 NAG . . . I 4 209.308 153.765 188.57 1 75.21 ? C8 NAG 1701 V 1 HETATM 9 N N2 NAG . . . I 4 207.436 152.801 189.734 1 75.21 ? N2 NAG 1701 V 1 HETATM 10 O O3 NAG . . . I 4 207.458 150.039 190.513 1 75.21 ? O3 NAG 1701 V 1 HETATM 11 O O4 NAG . . . I 4 205.369 148.408 189.385 1 75.21 ? O4 NAG 1701 V 1 HETATM 12 O O5 NAG . . . I 4 203.891 151.758 189.323 1 75.21 ? O5 NAG 1701 V 1 HETATM 13 O O6 NAG . . . I 4 202.063 150.201 190.323 1 75.21 ? O6 NAG 1701 V 1 HETATM 14 O O7 NAG . . . I 4 207.67 152.37 187.537 1 75.21 ? O7 NAG 1701 V 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #