data_7KWO # _model_server_result.job_id ftRpjZZAEvVIntAt3dLMMg _model_server_result.datetime_utc '2024-10-26 02:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1702}' # _entry.id 7KWO # _exptl.entry_id 7KWO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KWO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG A 3444 NAG 3 n C NAG 2 B 2 NAG A 3445 NAG 3 n C BMA 3 B 3 BMA A 3446 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 153 1_555 A SG CYS 198 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 267 A CYS 248 1_555 A SG CYS 348 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 547 A CYS 528 1_555 A SG CYS 573 A CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 649 A CYS 630 1_555 A SG CYS 730 A CYS 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 1239 A CYS 1832 1_555 A SG CYS 1265 A CYS 1858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 1428 A CYS 2021 1_555 A SG CYS 1576 A CYS 2169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 A SG CYS 1581 A CYS 2174 1_555 A SG CYS 1733 A CYS 2326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 767 V CYS 767 1_555 B SG CYS 808 V CYS 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 776 V CYS 776 1_555 B SG CYS 804 V CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? disulf ? disulf10 B SG CYS 788 V CYS 788 1_555 B SG CYS 799 V CYS 799 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 B SG CYS 792 V CYS 792 1_555 B SG CYS 827 V CYS 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 B SG CYS 810 V CYS 810 1_555 B SG CYS 821 V CYS 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 B SG CYS 829 V CYS 829 1_555 B SG CYS 851 V CYS 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 B SG CYS 846 V CYS 846 1_555 B SG CYS 863 V CYS 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 849 V CYS 849 1_555 B SG CYS 858 V CYS 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 B SG CYS 867 V CYS 867 1_555 B SG CYS 996 V CYS 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 B SG CYS 889 V CYS 889 1_555 B SG CYS 1031 V CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 B SG CYS 898 V CYS 898 1_555 B SG CYS 993 V CYS 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 B SG CYS 914 V CYS 914 1_555 B SG CYS 921 V CYS 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 B SG CYS 1046 V CYS 1046 1_555 B SG CYS 1089 V CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 B SG CYS 1060 V CYS 1060 1_555 B SG CYS 1084 V CYS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf22 B SG CYS 1071 V CYS 1071 1_555 B SG CYS 1111 V CYS 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf23 B SG CYS 1091 V CYS 1091 1_555 B SG CYS 1097 V CYS 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf24 B SG CYS 1101 V CYS 1101 1_555 B SG CYS 1126 V CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf25 B SG CYS 1130 V CYS 1130 1_555 B SG CYS 1173 V CYS 1173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf26 B SG CYS 1149 V CYS 1149 1_555 B SG CYS 1169 V CYS 1169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf27 B SG CYS 1153 V CYS 1153 1_555 B SG CYS 1165 V CYS 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf28 B SG CYS 1157 V CYS 1157 1_555 B SG CYS 1196 V CYS 1196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf29 B SG CYS 1177 V CYS 1177 1_555 B SG CYS 1190 V CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf30 B SG CYS 1199 V CYS 1199 1_555 B SG CYS 1227 V CYS 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf31 B SG CYS 1222 V CYS 1222 1_555 B SG CYS 1237 V CYS 1237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf32 B SG CYS 1225 V CYS 1225 1_555 B SG CYS 1234 V CYS 1234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 258 A ASN 239 1_555 D C1 NAG . A NAG 2601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A C ILE 1086 A ILE 1679 1_555 A N TYS 1087 A TYS 1680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C TYS 1087 A TYS 1680 1_555 A N ASP 1088 A ASP 1681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A ND2 ASN 1217 A ASN 1810 1_555 E C1 NAG . A NAG 2602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 A ND2 ASN 1525 A ASN 2118 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 857 V ASN 857 1_555 I C1 NAG . V NAG 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 C O4 NAG . B NAG 2 1_555 C C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O LYS 126 A LYS 107 1_555 F CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 A O GLU 141 A GLU 122 1_555 F CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc3 A OD1 ASP 144 A ASP 125 1_555 F CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 A OD2 ASP 144 A ASP 125 1_555 F CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc5 A OD1 ASP 145 A ASP 126 1_555 F CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc6 A ND1 HIS 286 A HIS 267 1_555 G ZN ZN . A ZN 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 A SG CYS 329 A CYS 310 1_555 G ZN ZN . A ZN 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc8 A ND1 HIS 334 A HIS 315 1_555 G ZN ZN . A ZN 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 A SG CYS 1407 A CYS 2000 1_555 H CU CU . A CU 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc10 A ND1 HIS 1412 A HIS 2005 1_555 H CU CU . A CU 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc11 B OD2 ASP 879 V ASP 879 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc12 B OD1 ASN 998 V ASN 998 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc13 B OD1 ASP 1000 V ASP 1000 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc14 B O ILE 1002 V ILE 1002 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc15 B OD1 ASN 1005 V ASN 1005 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc16 B OD1 ASP 1006 V ASP 1006 1_555 J CA CA . V CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KWO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 2601 2831 NAG NAG . E 4 NAG A 1 2602 3447 NAG NAG . F 5 CA A 1 2603 2830 CA CA . G 6 ZN A 1 2604 2831 ZN ZN . H 7 CU A 1 2605 2832 CU CU . I 4 NAG V 1 1701 1653 NAG NAG . J 5 CA V 1 1702 1718 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x 210.532 _atom_site.Cartn_y 174.433 _atom_site.Cartn_z 165.341 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1702 _atom_site.auth_asym_id V _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #