data_7KX6 # _model_server_result.job_id z8xWirPm-5wg94hPK5U6Zg _model_server_result.datetime_utc '2024-12-23 07:07:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kx6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7KX6 # _exptl.entry_id 7KX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.543 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.47 _cell.angle_gamma 90 _cell.entry_id 7KX6 _cell.length_a 66.18 _cell.length_b 63.33 _cell.length_c 152.491 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C25 H29 N7 O2' _chem_comp.formula_weight 459.543 _chem_comp.id X7Y _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C23 X7Y doub 376 n y C22 C21 X7Y sing 377 n y C23 C24 X7Y sing 378 n y C21 C20 X7Y doub 379 n y C24 C19 X7Y doub 380 n y C20 C19 X7Y sing 381 n y C20 C X7Y sing 382 n n O C X7Y doub 383 n n C19 N6 X7Y sing 384 n n C N X7Y sing 385 n n N6 C18 X7Y sing 386 n n N6 C3 X7Y sing 387 n n N C1 X7Y sing 388 n n N C2 X7Y sing 389 n n C3 C2 X7Y doub 390 n y C3 N1 X7Y sing 391 n y C2 C17 X7Y sing 392 n y N1 C4 X7Y doub 393 n y C17 N5 X7Y doub 394 n y C4 N5 X7Y sing 395 n y C4 N2 X7Y sing 396 n n C16 C15 X7Y doub 397 n y C16 C5 X7Y sing 398 n y C15 C9 X7Y sing 399 n y C10 C11 X7Y sing 400 n n C10 N3 X7Y sing 401 n n C11 N4 X7Y sing 402 n n N2 C5 X7Y sing 403 n n C5 C6 X7Y doub 404 n y C9 N3 X7Y sing 405 n n C9 C8 X7Y doub 406 n y N3 C14 X7Y sing 407 n n N4 C12 X7Y sing 408 n n N4 C13 X7Y sing 409 n n C6 C8 X7Y sing 410 n y C6 O1 X7Y sing 411 n n C14 C13 X7Y sing 412 n n O1 C7 X7Y sing 413 n n C7 H1 X7Y sing 414 n n C7 H2 X7Y sing 415 n n C7 H3 X7Y sing 416 n n C8 H4 X7Y sing 417 n n N2 H5 X7Y sing 418 n n C1 H6 X7Y sing 419 n n C1 H7 X7Y sing 420 n n C1 H8 X7Y sing 421 n n C10 H10 X7Y sing 422 n n C10 H11 X7Y sing 423 n n C11 H12 X7Y sing 424 n n C11 H13 X7Y sing 425 n n C12 H14 X7Y sing 426 n n C12 H15 X7Y sing 427 n n C12 H16 X7Y sing 428 n n C13 H17 X7Y sing 429 n n C13 H18 X7Y sing 430 n n C14 H19 X7Y sing 431 n n C14 H20 X7Y sing 432 n n C15 H21 X7Y sing 433 n n C16 H22 X7Y sing 434 n n C17 H23 X7Y sing 435 n n C18 H24 X7Y sing 436 n n C18 H25 X7Y sing 437 n n C18 H26 X7Y sing 438 n n C21 H27 X7Y sing 439 n n C22 H28 X7Y sing 440 n n C23 H29 X7Y sing 441 n n C24 H30 X7Y sing 442 n n # _atom_sites.entry_id 7KX6 _atom_sites.fract_transf_matrix[1][1] 0.01511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002792 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X7Y A 1 701 1 X7Y XXX . D 2 X7Y B 1 701 1 X7Y XXX . E 3 HOH A 1 801 75 HOH HOH . E 3 HOH A 2 802 33 HOH HOH . E 3 HOH A 3 803 65 HOH HOH . E 3 HOH A 4 804 97 HOH HOH . E 3 HOH A 5 805 56 HOH HOH . E 3 HOH A 6 806 62 HOH HOH . E 3 HOH A 7 807 71 HOH HOH . E 3 HOH A 8 808 35 HOH HOH . E 3 HOH A 9 809 48 HOH HOH . E 3 HOH A 10 810 19 HOH HOH . E 3 HOH A 11 811 39 HOH HOH . E 3 HOH A 12 812 21 HOH HOH . E 3 HOH A 13 813 25 HOH HOH . E 3 HOH A 14 814 22 HOH HOH . E 3 HOH A 15 815 106 HOH HOH . E 3 HOH A 16 816 99 HOH HOH . E 3 HOH A 17 817 14 HOH HOH . E 3 HOH A 18 818 52 HOH HOH . E 3 HOH A 19 819 13 HOH HOH . E 3 HOH A 20 820 7 HOH HOH . E 3 HOH A 21 821 110 HOH HOH . E 3 HOH A 22 822 5 HOH HOH . E 3 HOH A 23 823 12 HOH HOH . E 3 HOH A 24 824 27 HOH HOH . E 3 HOH A 25 825 54 HOH HOH . E 3 HOH A 26 826 81 HOH HOH . E 3 HOH A 27 827 79 HOH HOH . E 3 HOH A 28 828 55 HOH HOH . E 3 HOH A 29 829 3 HOH HOH . E 3 HOH A 30 830 67 HOH HOH . E 3 HOH A 31 831 122 HOH HOH . E 3 HOH A 32 832 11 HOH HOH . E 3 HOH A 33 833 69 HOH HOH . E 3 HOH A 34 834 36 HOH HOH . E 3 HOH A 35 835 18 HOH HOH . E 3 HOH A 36 836 29 HOH HOH . E 3 HOH A 37 837 28 HOH HOH . E 3 HOH A 38 838 49 HOH HOH . E 3 HOH A 39 839 103 HOH HOH . E 3 HOH A 40 840 1 HOH HOH . E 3 HOH A 41 841 41 HOH HOH . E 3 HOH A 42 842 101 HOH HOH . E 3 HOH A 43 843 10 HOH HOH . E 3 HOH A 44 844 30 HOH HOH . E 3 HOH A 45 845 4 HOH HOH . E 3 HOH A 46 846 42 HOH HOH . E 3 HOH A 47 847 15 HOH HOH . E 3 HOH A 48 848 83 HOH HOH . E 3 HOH A 49 849 51 HOH HOH . E 3 HOH A 50 850 61 HOH HOH . E 3 HOH A 51 851 46 HOH HOH . E 3 HOH A 52 852 76 HOH HOH . E 3 HOH A 53 853 115 HOH HOH . E 3 HOH A 54 854 123 HOH HOH . E 3 HOH A 55 855 86 HOH HOH . E 3 HOH A 56 856 120 HOH HOH . E 3 HOH A 57 857 95 HOH HOH . E 3 HOH A 58 858 91 HOH HOH . E 3 HOH A 59 859 105 HOH HOH . F 3 HOH B 1 801 24 HOH HOH . F 3 HOH B 2 802 44 HOH HOH . F 3 HOH B 3 803 26 HOH HOH . F 3 HOH B 4 804 58 HOH HOH . F 3 HOH B 5 805 50 HOH HOH . F 3 HOH B 6 806 96 HOH HOH . F 3 HOH B 7 807 38 HOH HOH . F 3 HOH B 8 808 16 HOH HOH . F 3 HOH B 9 809 59 HOH HOH . F 3 HOH B 10 810 40 HOH HOH . F 3 HOH B 11 811 93 HOH HOH . F 3 HOH B 12 812 34 HOH HOH . F 3 HOH B 13 813 74 HOH HOH . F 3 HOH B 14 814 9 HOH HOH . F 3 HOH B 15 815 31 HOH HOH . F 3 HOH B 16 816 20 HOH HOH . F 3 HOH B 17 817 43 HOH HOH . F 3 HOH B 18 818 112 HOH HOH . F 3 HOH B 19 819 32 HOH HOH . F 3 HOH B 20 820 72 HOH HOH . F 3 HOH B 21 821 70 HOH HOH . F 3 HOH B 22 822 47 HOH HOH . F 3 HOH B 23 823 37 HOH HOH . F 3 HOH B 24 824 6 HOH HOH . F 3 HOH B 25 825 124 HOH HOH . F 3 HOH B 26 826 23 HOH HOH . F 3 HOH B 27 827 53 HOH HOH . F 3 HOH B 28 828 98 HOH HOH . F 3 HOH B 29 829 8 HOH HOH . F 3 HOH B 30 830 84 HOH HOH . F 3 HOH B 31 831 92 HOH HOH . F 3 HOH B 32 832 116 HOH HOH . F 3 HOH B 33 833 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 X7Y . . . C 2 -10.385 24.501 -10.215 1 31.54 ? N1 X7Y 701 A 1 HETATM 2 C C7 X7Y . . . C 2 -10.598 27.167 -4.617 1 44.49 ? C7 X7Y 701 A 1 HETATM 3 C C8 X7Y . . . C 2 -12.282 27.894 -6.752 1 35.16 ? C8 X7Y 701 A 1 HETATM 4 N N2 X7Y . . . C 2 -9.839 25.61 -8.277 1 33.02 ? N2 X7Y 701 A 1 HETATM 5 C C9 X7Y . . . C 2 -13.165 28.137 -7.807 1 44.13 ? C9 X7Y 701 A 1 HETATM 6 O O1 X7Y . . . C 2 -10.328 26.693 -5.933 1 40.56 ? O1 X7Y 701 A 1 HETATM 7 C C1 X7Y . . . C 2 -8.206 20.344 -11.123 1 25.8 ? C1 X7Y 701 A 1 HETATM 8 C C5 X7Y . . . C 2 -10.944 26.468 -8.166 1 35.28 ? C5 X7Y 701 A 1 HETATM 9 C C6 X7Y . . . C 2 -11.198 27.055 -6.926 1 40.9 ? C6 X7Y 701 A 1 HETATM 10 N N3 X7Y . . . C 2 -14.308 28.891 -7.62 1 51.38 ? N3 X7Y 701 A 1 HETATM 11 C C4 X7Y . . . C 2 -9.495 24.701 -9.234 1 32.92 ? C4 X7Y 701 A 1 HETATM 12 C C3 X7Y . . . C 2 -10.137 23.497 -11.059 1 32.85 ? C3 X7Y 701 A 1 HETATM 13 C C2 X7Y . . . C 2 -8.977 22.691 -10.942 1 29.16 ? C2 X7Y 701 A 1 HETATM 14 N N4 X7Y . . . C 2 -16.593 30.593 -7.409 1 57.24 ? N4 X7Y 701 A 1 HETATM 15 N N X7Y . . . C 2 -8.727 21.551 -11.757 1 31.71 ? N X7Y 701 A 1 HETATM 16 C C X7Y . . . C 2 -8.949 21.489 -13.112 1 36.36 ? C X7Y 701 A 1 HETATM 17 O O X7Y . . . C 2 -8.715 20.469 -13.734 1 31.75 ? O X7Y 701 A 1 HETATM 18 C C10 X7Y . . . C 2 -15.171 29.141 -8.775 1 48.98 ? C10 X7Y 701 A 1 HETATM 19 C C11 X7Y . . . C 2 -16.58 29.452 -8.319 1 50.93 ? C11 X7Y 701 A 1 HETATM 20 C C12 X7Y . . . C 2 -17.962 30.909 -6.996 1 53.91 ? C12 X7Y 701 A 1 HETATM 21 C C13 X7Y . . . C 2 -15.757 30.299 -6.247 1 49.21 ? C13 X7Y 701 A 1 HETATM 22 C C14 X7Y . . . C 2 -14.33 30.002 -6.668 1 45.64 ? C14 X7Y 701 A 1 HETATM 23 C C15 X7Y . . . C 2 -12.912 27.545 -9.038 1 42.1 ? C15 X7Y 701 A 1 HETATM 24 C C16 X7Y . . . C 2 -11.832 26.703 -9.211 1 33.79 ? C16 X7Y 701 A 1 HETATM 25 C C17 X7Y . . . C 2 -8.111 23.034 -9.913 1 29.35 ? C17 X7Y 701 A 1 HETATM 26 C C18 X7Y . . . C 2 -12.425 23.795 -11.779 1 31.26 ? C18 X7Y 701 A 1 HETATM 27 C C19 X7Y . . . C 2 -10.526 23.498 -13.347 1 25.38 ? C19 X7Y 701 A 1 HETATM 28 C C20 X7Y . . . C 2 -9.491 22.686 -13.829 1 29.99 ? C20 X7Y 701 A 1 HETATM 29 C C21 X7Y . . . C 2 -8.926 22.97 -15.071 1 29.99 ? C21 X7Y 701 A 1 HETATM 30 C C22 X7Y . . . C 2 -9.393 24.037 -15.816 1 32.25 ? C22 X7Y 701 A 1 HETATM 31 C C23 X7Y . . . C 2 -10.419 24.826 -15.34 1 29.67 ? C23 X7Y 701 A 1 HETATM 32 C C24 X7Y . . . C 2 -10.992 24.564 -14.108 1 26.05 ? C24 X7Y 701 A 1 HETATM 33 N N5 X7Y . . . C 2 -8.35 24.029 -9.048 1 32.64 ? N5 X7Y 701 A 1 HETATM 34 N N6 X7Y . . . C 2 -11.085 23.278 -12.057 1 32.65 ? N6 X7Y 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #