data_7KX6
#
_model_server_result.job_id            dmEM0kIynAvrzQYetBKD5Q 
_model_server_result.datetime_utc      '2024-12-23 06:09:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kx6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    7KX6 
#
_exptl.entry_id    7KX6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              459.543 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.47 
_cell.angle_gamma         90 
_cell.entry_id            7KX6 
_cell.length_a            66.18 
_cell.length_b            63.33 
_cell.length_c            152.491 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KX6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C25 H29 N7 O2' 
_chem_comp.formula_weight    459.543 
_chem_comp.id                X7Y 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C23 X7Y doub 376 n y 
C22 C21 X7Y sing 377 n y 
C23 C24 X7Y sing 378 n y 
C21 C20 X7Y doub 379 n y 
C24 C19 X7Y doub 380 n y 
C20 C19 X7Y sing 381 n y 
C20 C X7Y sing 382 n n 
O C X7Y doub 383 n n 
C19 N6 X7Y sing 384 n n 
C N X7Y sing 385 n n 
N6 C18 X7Y sing 386 n n 
N6 C3 X7Y sing 387 n n 
N C1 X7Y sing 388 n n 
N C2 X7Y sing 389 n n 
C3 C2 X7Y doub 390 n y 
C3 N1 X7Y sing 391 n y 
C2 C17 X7Y sing 392 n y 
N1 C4 X7Y doub 393 n y 
C17 N5 X7Y doub 394 n y 
C4 N5 X7Y sing 395 n y 
C4 N2 X7Y sing 396 n n 
C16 C15 X7Y doub 397 n y 
C16 C5 X7Y sing 398 n y 
C15 C9 X7Y sing 399 n y 
C10 C11 X7Y sing 400 n n 
C10 N3 X7Y sing 401 n n 
C11 N4 X7Y sing 402 n n 
N2 C5 X7Y sing 403 n n 
C5 C6 X7Y doub 404 n y 
C9 N3 X7Y sing 405 n n 
C9 C8 X7Y doub 406 n y 
N3 C14 X7Y sing 407 n n 
N4 C12 X7Y sing 408 n n 
N4 C13 X7Y sing 409 n n 
C6 C8 X7Y sing 410 n y 
C6 O1 X7Y sing 411 n n 
C14 C13 X7Y sing 412 n n 
O1 C7 X7Y sing 413 n n 
C7 H1 X7Y sing 414 n n 
C7 H2 X7Y sing 415 n n 
C7 H3 X7Y sing 416 n n 
C8 H4 X7Y sing 417 n n 
N2 H5 X7Y sing 418 n n 
C1 H6 X7Y sing 419 n n 
C1 H7 X7Y sing 420 n n 
C1 H8 X7Y sing 421 n n 
C10 H10 X7Y sing 422 n n 
C10 H11 X7Y sing 423 n n 
C11 H12 X7Y sing 424 n n 
C11 H13 X7Y sing 425 n n 
C12 H14 X7Y sing 426 n n 
C12 H15 X7Y sing 427 n n 
C12 H16 X7Y sing 428 n n 
C13 H17 X7Y sing 429 n n 
C13 H18 X7Y sing 430 n n 
C14 H19 X7Y sing 431 n n 
C14 H20 X7Y sing 432 n n 
C15 H21 X7Y sing 433 n n 
C16 H22 X7Y sing 434 n n 
C17 H23 X7Y sing 435 n n 
C18 H24 X7Y sing 436 n n 
C18 H25 X7Y sing 437 n n 
C18 H26 X7Y sing 438 n n 
C21 H27 X7Y sing 439 n n 
C22 H28 X7Y sing 440 n n 
C23 H29 X7Y sing 441 n n 
C24 H30 X7Y sing 442 n n 
#
_atom_sites.entry_id                     7KX6 
_atom_sites.fract_transf_matrix[1][1]    0.01511 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002792 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01579 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006669 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 X7Y A 1 701 1 X7Y XXX . 
D 2 X7Y B 1 701 1 X7Y XXX . 
E 3 HOH A 1 801 75 HOH HOH . 
E 3 HOH A 2 802 33 HOH HOH . 
E 3 HOH A 3 803 65 HOH HOH . 
E 3 HOH A 4 804 97 HOH HOH . 
E 3 HOH A 5 805 56 HOH HOH . 
E 3 HOH A 6 806 62 HOH HOH . 
E 3 HOH A 7 807 71 HOH HOH . 
E 3 HOH A 8 808 35 HOH HOH . 
E 3 HOH A 9 809 48 HOH HOH . 
E 3 HOH A 10 810 19 HOH HOH . 
E 3 HOH A 11 811 39 HOH HOH . 
E 3 HOH A 12 812 21 HOH HOH . 
E 3 HOH A 13 813 25 HOH HOH . 
E 3 HOH A 14 814 22 HOH HOH . 
E 3 HOH A 15 815 106 HOH HOH . 
E 3 HOH A 16 816 99 HOH HOH . 
E 3 HOH A 17 817 14 HOH HOH . 
E 3 HOH A 18 818 52 HOH HOH . 
E 3 HOH A 19 819 13 HOH HOH . 
E 3 HOH A 20 820 7 HOH HOH . 
E 3 HOH A 21 821 110 HOH HOH . 
E 3 HOH A 22 822 5 HOH HOH . 
E 3 HOH A 23 823 12 HOH HOH . 
E 3 HOH A 24 824 27 HOH HOH . 
E 3 HOH A 25 825 54 HOH HOH . 
E 3 HOH A 26 826 81 HOH HOH . 
E 3 HOH A 27 827 79 HOH HOH . 
E 3 HOH A 28 828 55 HOH HOH . 
E 3 HOH A 29 829 3 HOH HOH . 
E 3 HOH A 30 830 67 HOH HOH . 
E 3 HOH A 31 831 122 HOH HOH . 
E 3 HOH A 32 832 11 HOH HOH . 
E 3 HOH A 33 833 69 HOH HOH . 
E 3 HOH A 34 834 36 HOH HOH . 
E 3 HOH A 35 835 18 HOH HOH . 
E 3 HOH A 36 836 29 HOH HOH . 
E 3 HOH A 37 837 28 HOH HOH . 
E 3 HOH A 38 838 49 HOH HOH . 
E 3 HOH A 39 839 103 HOH HOH . 
E 3 HOH A 40 840 1 HOH HOH . 
E 3 HOH A 41 841 41 HOH HOH . 
E 3 HOH A 42 842 101 HOH HOH . 
E 3 HOH A 43 843 10 HOH HOH . 
E 3 HOH A 44 844 30 HOH HOH . 
E 3 HOH A 45 845 4 HOH HOH . 
E 3 HOH A 46 846 42 HOH HOH . 
E 3 HOH A 47 847 15 HOH HOH . 
E 3 HOH A 48 848 83 HOH HOH . 
E 3 HOH A 49 849 51 HOH HOH . 
E 3 HOH A 50 850 61 HOH HOH . 
E 3 HOH A 51 851 46 HOH HOH . 
E 3 HOH A 52 852 76 HOH HOH . 
E 3 HOH A 53 853 115 HOH HOH . 
E 3 HOH A 54 854 123 HOH HOH . 
E 3 HOH A 55 855 86 HOH HOH . 
E 3 HOH A 56 856 120 HOH HOH . 
E 3 HOH A 57 857 95 HOH HOH . 
E 3 HOH A 58 858 91 HOH HOH . 
E 3 HOH A 59 859 105 HOH HOH . 
F 3 HOH B 1 801 24 HOH HOH . 
F 3 HOH B 2 802 44 HOH HOH . 
F 3 HOH B 3 803 26 HOH HOH . 
F 3 HOH B 4 804 58 HOH HOH . 
F 3 HOH B 5 805 50 HOH HOH . 
F 3 HOH B 6 806 96 HOH HOH . 
F 3 HOH B 7 807 38 HOH HOH . 
F 3 HOH B 8 808 16 HOH HOH . 
F 3 HOH B 9 809 59 HOH HOH . 
F 3 HOH B 10 810 40 HOH HOH . 
F 3 HOH B 11 811 93 HOH HOH . 
F 3 HOH B 12 812 34 HOH HOH . 
F 3 HOH B 13 813 74 HOH HOH . 
F 3 HOH B 14 814 9 HOH HOH . 
F 3 HOH B 15 815 31 HOH HOH . 
F 3 HOH B 16 816 20 HOH HOH . 
F 3 HOH B 17 817 43 HOH HOH . 
F 3 HOH B 18 818 112 HOH HOH . 
F 3 HOH B 19 819 32 HOH HOH . 
F 3 HOH B 20 820 72 HOH HOH . 
F 3 HOH B 21 821 70 HOH HOH . 
F 3 HOH B 22 822 47 HOH HOH . 
F 3 HOH B 23 823 37 HOH HOH . 
F 3 HOH B 24 824 6 HOH HOH . 
F 3 HOH B 25 825 124 HOH HOH . 
F 3 HOH B 26 826 23 HOH HOH . 
F 3 HOH B 27 827 53 HOH HOH . 
F 3 HOH B 28 828 98 HOH HOH . 
F 3 HOH B 29 829 8 HOH HOH . 
F 3 HOH B 30 830 84 HOH HOH . 
F 3 HOH B 31 831 92 HOH HOH . 
F 3 HOH B 32 832 116 HOH HOH . 
F 3 HOH B 33 833 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 X7Y . . . D 2 -40.543 13.541 -19.566 1 32.45 ? N1 X7Y 701 B 1 
HETATM 2 C C7 X7Y . . . D 2 -44.805 17.073 -16.847 1 47.36 ? C7 X7Y 701 B 1 
HETATM 3 C C8 X7Y . . . D 2 -42.784 15.722 -15.434 1 43.35 ? C8 X7Y 701 B 1 
HETATM 4 N N2 X7Y . . . D 2 -42.546 14.377 -18.843 1 32.23 ? N2 X7Y 701 B 1 
HETATM 5 C C9 X7Y . . . D 2 -41.706 15.111 -14.79 1 43.05 ? C9 X7Y 701 B 1 
HETATM 6 O O1 X7Y . . . D 2 -44.002 16.099 -17.508 1 40.58 ? O1 X7Y 701 B 1 
HETATM 7 C C1 X7Y . . . D 2 -39.661 13.62 -24.274 1 29.31 ? C1 X7Y 701 B 1 
HETATM 8 C C5 X7Y . . . D 2 -42.248 14.574 -17.485 1 36.24 ? C5 X7Y 701 B 1 
HETATM 9 C C6 X7Y . . . D 2 -43.035 15.474 -16.769 1 38.92 ? C6 X7Y 701 B 1 
HETATM 10 N N3 X7Y . . . D 2 -41.391 15.422 -13.483 1 50.59 ? N3 X7Y 701 B 1 
HETATM 11 C C4 X7Y . . . D 2 -41.811 13.849 -19.863 1 31.66 ? C4 X7Y 701 B 1 
HETATM 12 C C3 X7Y . . . D 2 -39.751 13.201 -20.584 1 33.49 ? C3 X7Y 701 B 1 
HETATM 13 C C2 X7Y . . . D 2 -40.234 13.135 -21.915 1 33.28 ? C2 X7Y 701 B 1 
HETATM 14 N N4 X7Y . . . D 2 -40.77 15.832 -10.723 1 53.21 ? N4 X7Y 701 B 1 
HETATM 15 N N X7Y . . . D 2 -39.415 12.868 -23.048 1 35.68 ? N X7Y 701 B 1 
HETATM 16 C C X7Y . . . D 2 -38.381 11.959 -23.095 1 35.26 ? C X7Y 701 B 1 
HETATM 17 O O X7Y . . . D 2 -37.727 11.824 -24.111 1 33.45 ? O X7Y 701 B 1 
HETATM 18 C C10 X7Y . . . D 2 -40.227 14.783 -12.869 1 46.65 ? C10 X7Y 701 B 1 
HETATM 19 C C11 X7Y . . . D 2 -39.719 15.621 -11.715 1 51.89 ? C11 X7Y 701 B 1 
HETATM 20 C C12 X7Y . . . D 2 -40.265 16.617 -9.596 1 44.71 ? C12 X7Y 701 B 1 
HETATM 21 C C13 X7Y . . . D 2 -41.906 16.503 -11.352 1 58.79 ? C13 X7Y 701 B 1 
HETATM 22 C C14 X7Y . . . D 2 -42.45 15.681 -12.506 1 52.37 ? C14 X7Y 701 B 1 
HETATM 23 C C15 X7Y . . . D 2 -40.907 14.235 -15.513 1 35.78 ? C15 X7Y 701 B 1 
HETATM 24 C C16 X7Y . . . D 2 -41.157 13.988 -16.849 1 38.68 ? C16 X7Y 701 B 1 
HETATM 25 C C17 X7Y . . . D 2 -41.58 13.43 -22.081 1 30.47 ? C17 X7Y 701 B 1 
HETATM 26 C C18 X7Y . . . D 2 -37.89 13.575 -19.06 1 34.94 ? C18 X7Y 701 B 1 
HETATM 27 C C19 X7Y . . . D 2 -38.039 11.608 -20.569 1 33.66 ? C19 X7Y 701 B 1 
HETATM 28 C C20 X7Y . . . D 2 -38.045 11.138 -21.89 1 31.72 ? C20 X7Y 701 B 1 
HETATM 29 C C21 X7Y . . . D 2 -37.668 9.82 -22.141 1 31.22 ? C21 X7Y 701 B 1 
HETATM 30 C C22 X7Y . . . D 2 -37.286 8.995 -21.099 1 34.13 ? C22 X7Y 701 B 1 
HETATM 31 C C23 X7Y . . . D 2 -37.282 9.466 -19.803 1 35.2 ? C23 X7Y 701 B 1 
HETATM 32 C C24 X7Y . . . D 2 -37.659 10.769 -19.528 1 36.01 ? C24 X7Y 701 B 1 
HETATM 33 N N5 X7Y . . . D 2 -42.383 13.791 -21.073 1 31.56 ? N5 X7Y 701 B 1 
HETATM 34 N N6 X7Y . . . D 2 -38.418 12.946 -20.27 1 35.32 ? N6 X7Y 701 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#