data_7KX8 # _model_server_result.job_id 4v2ZJ0h46REQyh7NUh-qnw _model_server_result.datetime_utc '2024-11-27 20:58:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7KX8 # _exptl.entry_id 7KX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.57 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-ethyl-2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-11-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.07 _cell.angle_gamma 90 _cell.entry_id 7KX8 _cell.length_a 65.92 _cell.length_b 62.43 _cell.length_c 72.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H31 N7 O2' _chem_comp.formula_weight 473.57 _chem_comp.id X8J _chem_comp.mon_nstd_flag . _chem_comp.name 5-ethyl-2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-11-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 X8J doub 374 n y C23 C24 X8J sing 375 n y C22 C21 X8J sing 376 n y C24 C25 X8J doub 377 n y O C X8J doub 378 n n C21 C X8J sing 379 n n C21 C20 X8J doub 380 n y C25 C20 X8J sing 381 n y C N X8J sing 382 n n C20 N6 X8J sing 383 n n N C1 X8J sing 384 n n N C3 X8J sing 385 n n N6 C19 X8J sing 386 n n N6 C4 X8J sing 387 n n C2 C1 X8J sing 388 n n C3 C4 X8J doub 389 n y C3 C18 X8J sing 390 n y C4 N1 X8J sing 391 n y C18 N5 X8J doub 392 n y N1 C5 X8J doub 393 n y C5 N5 X8J sing 394 n y C5 N2 X8J sing 395 n n C17 C16 X8J doub 396 n y C17 C6 X8J sing 397 n y C16 C10 X8J sing 398 n y N2 C6 X8J sing 399 n n C6 C7 X8J doub 400 n y C15 C14 X8J sing 401 n n C15 N3 X8J sing 402 n n C10 N3 X8J sing 403 n n C10 C9 X8J doub 404 n y C14 N4 X8J sing 405 n n N3 C11 X8J sing 406 n n N4 C13 X8J sing 407 n n N4 C12 X8J sing 408 n n C11 C12 X8J sing 409 n n C7 C9 X8J sing 410 n y C7 O1 X8J sing 411 n n O1 C8 X8J sing 412 n n C8 H1 X8J sing 413 n n C8 H2 X8J sing 414 n n C8 H3 X8J sing 415 n n N2 H4 X8J sing 416 n n C9 H5 X8J sing 417 n n C1 H6 X8J sing 418 n n C1 H7 X8J sing 419 n n C2 H8 X8J sing 420 n n C2 H9 X8J sing 421 n n C2 H10 X8J sing 422 n n C11 H12 X8J sing 423 n n C11 H13 X8J sing 424 n n C12 H14 X8J sing 425 n n C12 H15 X8J sing 426 n n C13 H16 X8J sing 427 n n C13 H17 X8J sing 428 n n C13 H18 X8J sing 429 n n C14 H19 X8J sing 430 n n C14 H20 X8J sing 431 n n C15 H21 X8J sing 432 n n C15 H22 X8J sing 433 n n C16 H23 X8J sing 434 n n C17 H24 X8J sing 435 n n C18 H25 X8J sing 436 n n C19 H26 X8J sing 437 n n C19 H27 X8J sing 438 n n C19 H28 X8J sing 439 n n C22 H29 X8J sing 440 n n C23 H30 X8J sing 441 n n C24 H31 X8J sing 442 n n C25 H32 X8J sing 443 n n # _atom_sites.entry_id 7KX8 _atom_sites.fract_transf_matrix[1][1] 0.01517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001613 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X8J A 1 701 1 X8J XXX . D 2 X8J B 1 701 1 X8J XXX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 X8J . . . C 2 57.864 -8.563 98.788 1 40.9 ? N1 X8J 701 A 1 HETATM 2 C C7 X8J . . . C 2 57.207 -6.404 102.223 1 52.95 ? C7 X8J 701 A 1 HETATM 3 C C8 X8J . . . C 2 57.63 -7.026 104.489 1 53.59 ? C8 X8J 701 A 1 HETATM 4 N N2 X8J . . . C 2 58.664 -7.367 100.582 1 42.3 ? N2 X8J 701 A 1 HETATM 5 C C9 X8J . . . C 2 56.119 -5.628 102.573 1 59.2 ? C9 X8J 701 A 1 HETATM 6 O O1 X8J . . . C 2 57.979 -7.101 103.109 1 51.19 ? O1 X8J 701 A 1 HETATM 7 C C1 X8J . . . C 2 59.941 -12.633 97.401 1 37.7 ? C1 X8J 701 A 1 HETATM 8 C C5 X8J . . . C 2 58.87 -8.334 99.646 1 39.32 ? C5 X8J 701 A 1 HETATM 9 C C6 X8J . . . C 2 57.591 -6.526 100.889 1 48.1 ? C6 X8J 701 A 1 HETATM 10 N N3 X8J . . . C 2 54.263 -4.212 101.935 1 59.31 ? N3 X8J 701 A 1 HETATM 11 C C4 X8J . . . C 2 58.065 -9.526 97.882 1 34.28 ? C4 X8J 701 A 1 HETATM 12 C C3 X8J . . . C 2 59.265 -10.28 97.835 1 33.43 ? C3 X8J 701 A 1 HETATM 13 C C2 X8J . . . C 2 58.973 -13.788 97.377 1 31.83 ? C2 X8J 701 A 1 HETATM 14 N N4 X8J . . . C 2 51.718 -2.895 101.941 1 71.6 ? N4 X8J 701 A 1 HETATM 15 N N X8J . . . C 2 59.491 -11.329 96.891 1 38.14 ? N X8J 701 A 1 HETATM 16 C C X8J . . . C 2 59.312 -11.21 95.543 1 41.57 ? C X8J 701 A 1 HETATM 17 O O X8J . . . C 2 59.73 -12.062 94.781 1 43.15 ? O X8J 701 A 1 HETATM 18 C C10 X8J . . . C 2 55.386 -4.954 101.596 1 57.46 ? C10 X8J 701 A 1 HETATM 19 C C11 X8J . . . C 2 53.016 -4.967 102.081 1 57.05 ? C11 X8J 701 A 1 HETATM 20 C C12 X8J . . . C 2 51.945 -4.108 102.72 1 64.24 ? C12 X8J 701 A 1 HETATM 21 C C13 X8J . . . C 2 50.655 -2.086 102.539 1 68.16 ? C13 X8J 701 A 1 HETATM 22 C C14 X8J . . . C 2 52.962 -2.135 101.857 1 66.87 ? C14 X8J 701 A 1 HETATM 23 C C15 X8J . . . C 2 54.055 -2.96 101.204 1 64.99 ? C15 X8J 701 A 1 HETATM 24 C C16 X8J . . . C 2 55.784 -5.065 100.268 1 54.2 ? C16 X8J 701 A 1 HETATM 25 C C17 X8J . . . C 2 56.874 -5.84 99.915 1 50.3 ? C17 X8J 701 A 1 HETATM 26 C C18 X8J . . . C 2 60.222 -9.939 98.779 1 36.1 ? C18 X8J 701 A 1 HETATM 27 C C19 X8J . . . C 2 55.743 -9.334 97.346 1 34.66 ? C19 X8J 701 A 1 HETATM 28 C C20 X8J . . . C 2 57.542 -9.348 95.639 1 36.82 ? C20 X8J 701 A 1 HETATM 29 C C21 X8J . . . C 2 58.599 -10.013 95 1 36.75 ? C21 X8J 701 A 1 HETATM 30 C C22 X8J . . . C 2 59.051 -9.547 93.768 1 34.83 ? C22 X8J 701 A 1 HETATM 31 C C23 X8J . . . C 2 58.458 -8.442 93.184 1 35.29 ? C23 X8J 701 A 1 HETATM 32 C C24 X8J . . . C 2 57.416 -7.797 93.813 1 34.87 ? C24 X8J 701 A 1 HETATM 33 C C25 X8J . . . C 2 56.952 -8.243 95.038 1 35.4 ? C25 X8J 701 A 1 HETATM 34 N N5 X8J . . . C 2 60.048 -8.971 99.687 1 37.49 ? N5 X8J 701 A 1 HETATM 35 N N6 X8J . . . C 2 57.077 -9.754 96.922 1 34.09 ? N6 X8J 701 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #