data_7KX8
#
_model_server_result.job_id            08Z9W-UmJ9ZYNr36Ceuo4A 
_model_server_result.datetime_utc      '2024-10-20 01:24:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kx8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    7KX8 
#
_exptl.entry_id    7KX8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              473.57 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-ethyl-2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-11-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.07 
_cell.angle_gamma         90 
_cell.entry_id            7KX8 
_cell.length_a            65.92 
_cell.length_b            62.43 
_cell.length_c            72.08 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KX8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C26 H31 N7 O2' 
_chem_comp.formula_weight    473.57 
_chem_comp.id                X8J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-ethyl-2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-11-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C22 X8J doub 374 n y 
C23 C24 X8J sing 375 n y 
C22 C21 X8J sing 376 n y 
C24 C25 X8J doub 377 n y 
O C X8J doub 378 n n 
C21 C X8J sing 379 n n 
C21 C20 X8J doub 380 n y 
C25 C20 X8J sing 381 n y 
C N X8J sing 382 n n 
C20 N6 X8J sing 383 n n 
N C1 X8J sing 384 n n 
N C3 X8J sing 385 n n 
N6 C19 X8J sing 386 n n 
N6 C4 X8J sing 387 n n 
C2 C1 X8J sing 388 n n 
C3 C4 X8J doub 389 n y 
C3 C18 X8J sing 390 n y 
C4 N1 X8J sing 391 n y 
C18 N5 X8J doub 392 n y 
N1 C5 X8J doub 393 n y 
C5 N5 X8J sing 394 n y 
C5 N2 X8J sing 395 n n 
C17 C16 X8J doub 396 n y 
C17 C6 X8J sing 397 n y 
C16 C10 X8J sing 398 n y 
N2 C6 X8J sing 399 n n 
C6 C7 X8J doub 400 n y 
C15 C14 X8J sing 401 n n 
C15 N3 X8J sing 402 n n 
C10 N3 X8J sing 403 n n 
C10 C9 X8J doub 404 n y 
C14 N4 X8J sing 405 n n 
N3 C11 X8J sing 406 n n 
N4 C13 X8J sing 407 n n 
N4 C12 X8J sing 408 n n 
C11 C12 X8J sing 409 n n 
C7 C9 X8J sing 410 n y 
C7 O1 X8J sing 411 n n 
O1 C8 X8J sing 412 n n 
C8 H1 X8J sing 413 n n 
C8 H2 X8J sing 414 n n 
C8 H3 X8J sing 415 n n 
N2 H4 X8J sing 416 n n 
C9 H5 X8J sing 417 n n 
C1 H6 X8J sing 418 n n 
C1 H7 X8J sing 419 n n 
C2 H8 X8J sing 420 n n 
C2 H9 X8J sing 421 n n 
C2 H10 X8J sing 422 n n 
C11 H12 X8J sing 423 n n 
C11 H13 X8J sing 424 n n 
C12 H14 X8J sing 425 n n 
C12 H15 X8J sing 426 n n 
C13 H16 X8J sing 427 n n 
C13 H17 X8J sing 428 n n 
C13 H18 X8J sing 429 n n 
C14 H19 X8J sing 430 n n 
C14 H20 X8J sing 431 n n 
C15 H21 X8J sing 432 n n 
C15 H22 X8J sing 433 n n 
C16 H23 X8J sing 434 n n 
C17 H24 X8J sing 435 n n 
C18 H25 X8J sing 436 n n 
C19 H26 X8J sing 437 n n 
C19 H27 X8J sing 438 n n 
C19 H28 X8J sing 439 n n 
C22 H29 X8J sing 440 n n 
C23 H30 X8J sing 441 n n 
C24 H31 X8J sing 442 n n 
C25 H32 X8J sing 443 n n 
#
_atom_sites.entry_id                     7KX8 
_atom_sites.fract_transf_matrix[1][1]    0.01517 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001613 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016018 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013952 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 X8J A 1 701 1 X8J XXX . 
D 2 X8J B 1 701 1 X8J XXX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 X8J . . . D 2 28.113 -17.522 89.778 1 36.09 ? N1 X8J 701 B 1 
HETATM 2 C C7 X8J . . . D 2 25.709 -15.617 92.65 1 47.28 ? C7 X8J 701 B 1 
HETATM 3 C C8 X8J . . . D 2 24.081 -13.88 92.485 1 55.82 ? C8 X8J 701 B 1 
HETATM 4 N N2 X8J . . . D 2 26.082 -16.897 90.66 1 41.37 ? N2 X8J 701 B 1 
HETATM 5 C C9 X8J . . . D 2 25.999 -15.307 93.964 1 50.73 ? C9 X8J 701 B 1 
HETATM 6 O O1 X8J . . . D 2 24.781 -14.967 91.887 1 51.05 ? O1 X8J 701 B 1 
HETATM 7 C C1 X8J . . . D 2 28.831 -17.471 85.083 1 30.1 ? C1 X8J 701 B 1 
HETATM 8 C C5 X8J . . . D 2 26.806 -17.294 89.58 1 36.49 ? C5 X8J 701 B 1 
HETATM 9 C C6 X8J . . . D 2 26.387 -16.647 91.998 1 44.14 ? C6 X8J 701 B 1 
HETATM 10 N N3 X8J . . . D 2 27.317 -15.674 95.95 1 53.96 ? N3 X8J 701 B 1 
HETATM 11 C C4 X8J . . . D 2 28.821 -17.888 88.704 1 34.13 ? C4 X8J 701 B 1 
HETATM 12 C C3 X8J . . . D 2 28.228 -18.02 87.426 1 30.72 ? C3 X8J 701 B 1 
HETATM 13 C C2 X8J . . . D 2 30.103 -16.673 85.149 1 25.63 ? C2 X8J 701 B 1 
HETATM 14 N N4 X8J . . . D 2 28.78 -15.426 98.401 1 72.42 ? N4 X8J 701 B 1 
HETATM 15 N N X8J . . . D 2 28.973 -18.353 86.249 1 28.84 ? N X8J 701 B 1 
HETATM 16 C C X8J . . . D 2 29.809 -19.422 86.134 1 31.34 ? C X8J 701 B 1 
HETATM 17 O O X8J . . . D 2 30.157 -19.826 85.039 1 32.11 ? O X8J 701 B 1 
HETATM 18 C C10 X8J . . . D 2 26.982 -16.014 94.657 1 53.54 ? C10 X8J 701 B 1 
HETATM 19 C C11 X8J . . . D 2 28.449 -14.75 96.07 1 55.69 ? C11 X8J 701 B 1 
HETATM 20 C C12 X8J . . . D 2 28.614 -14.287 97.503 1 63.34 ? C12 X8J 701 B 1 
HETATM 21 C C13 X8J . . . D 2 28.977 -14.976 99.78 1 65.5 ? C13 X8J 701 B 1 
HETATM 22 C C14 X8J . . . D 2 27.609 -16.293 98.303 1 63.83 ? C14 X8J 701 B 1 
HETATM 23 C C15 X8J . . . D 2 27.428 -16.796 96.886 1 54.41 ? C15 X8J 701 B 1 
HETATM 24 C C16 X8J . . . D 2 27.647 -17.047 94.006 1 50.39 ? C16 X8J 701 B 1 
HETATM 25 C C17 X8J . . . D 2 27.354 -17.365 92.693 1 43.08 ? C17 X8J 701 B 1 
HETATM 26 C C18 X8J . . . D 2 26.868 -17.765 87.361 1 30.49 ? C18 X8J 701 B 1 
HETATM 27 C C19 X8J . . . D 2 30.754 -17.533 90.061 1 30.53 ? C19 X8J 701 B 1 
HETATM 28 C C20 X8J . . . D 2 30.493 -19.524 88.625 1 30.12 ? C20 X8J 701 B 1 
HETATM 29 C C21 X8J . . . D 2 30.307 -20.114 87.364 1 30.75 ? C21 X8J 701 B 1 
HETATM 30 C C22 X8J . . . D 2 30.627 -21.458 87.189 1 28.92 ? C22 X8J 701 B 1 
HETATM 31 C C23 X8J . . . D 2 31.129 -22.197 88.244 1 30.7 ? C23 X8J 701 B 1 
HETATM 32 C C24 X8J . . . D 2 31.314 -21.613 89.477 1 37.89 ? C24 X8J 701 B 1 
HETATM 33 C C25 X8J . . . D 2 30.998 -20.281 89.676 1 32 ? C25 X8J 701 B 1 
HETATM 34 N N5 X8J . . . D 2 26.14 -17.402 88.422 1 35.1 ? N5 X8J 701 B 1 
HETATM 35 N N6 X8J . . . D 2 30.181 -18.157 88.869 1 30.1 ? N6 X8J 701 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           35 
#