data_7KXB # _model_server_result.job_id UfHvGkWtj8S2oak9zA3iHg _model_server_result.datetime_utc '2024-11-16 00:46:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7KXB # _exptl.entry_id 7KXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-{3-[(1,3-dimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)sulfanyl]propyl}-N'-[2-(morpholin-4-yl)ethyl]thiourea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KXB _cell.length_a 113.636 _cell.length_b 113.636 _cell.length_c 39.37 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H27 N7 O3 S2' _chem_comp.formula_weight 441.571 _chem_comp.id XB1 _chem_comp.mon_nstd_flag . _chem_comp.name "N-{3-[(1,3-dimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)sulfanyl]propyl}-N'-[2-(morpholin-4-yl)ethyl]thiourea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 O19 XB1 sing 361 n n C20 C21 XB1 sing 362 n n O19 C18 XB1 sing 363 n n C21 N16 XB1 sing 364 n n C18 C17 XB1 sing 365 n n N16 C17 XB1 sing 366 n n N16 C15 XB1 sing 367 n n C15 C14 XB1 sing 368 n n C14 N13 XB1 sing 369 n n N13 C12 XB1 sing 370 n n C25 N24 XB1 sing 371 n n S22 C12 XB1 doub 372 n n N11 C12 XB1 sing 373 n n N11 C10 XB1 sing 374 n n N24 C04 XB1 sing 375 n n N24 C26 XB1 sing 376 n n N05 C04 XB1 sing 377 n y N05 C06 XB1 sing 378 n y C10 C09 XB1 sing 379 n n O29 C26 XB1 doub 380 n n C04 C03 XB1 doub 381 n y C26 N27 XB1 sing 382 n n S07 C06 XB1 sing 383 n n S07 C08 XB1 sing 384 n n C06 N23 XB1 doub 385 n y C09 C08 XB1 sing 386 n n C03 N23 XB1 sing 387 n y C03 C02 XB1 sing 388 n n N27 C02 XB1 sing 389 n n N27 C28 XB1 sing 390 n n C02 O01 XB1 doub 391 n n C10 H1 XB1 sing 392 n n C10 H2 XB1 sing 393 n n C15 H3 XB1 sing 394 n n C15 H4 XB1 sing 395 n n C17 H5 XB1 sing 396 n n C17 H6 XB1 sing 397 n n C20 H7 XB1 sing 398 n n C20 H8 XB1 sing 399 n n C21 H9 XB1 sing 400 n n C21 H10 XB1 sing 401 n n C28 H11 XB1 sing 402 n n C28 H12 XB1 sing 403 n n C28 H13 XB1 sing 404 n n C08 H14 XB1 sing 405 n n C08 H15 XB1 sing 406 n n C09 H16 XB1 sing 407 n n C09 H17 XB1 sing 408 n n C14 H19 XB1 sing 409 n n C14 H20 XB1 sing 410 n n C18 H21 XB1 sing 411 n n C18 H22 XB1 sing 412 n n C25 H23 XB1 sing 413 n n C25 H24 XB1 sing 414 n n C25 H25 XB1 sing 415 n n N05 H26 XB1 sing 416 n n N11 H27 XB1 sing 417 n n N13 H29 XB1 sing 418 n n # _atom_sites.entry_id 7KXB _atom_sites.fract_transf_matrix[1][1] 0.0088 _atom_sites.fract_transf_matrix[1][2] 0.005081 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XB1 A 1 201 201 XB1 LIG . C 3 BME A 1 202 301 BME BME . D 4 SO4 A 1 203 401 SO4 SO4 . E 4 SO4 A 1 204 402 SO4 SO4 . F 4 SO4 A 1 205 403 SO4 SO4 . G 5 HOH A 1 301 183 HOH HOH . G 5 HOH A 2 302 107 HOH HOH . G 5 HOH A 3 303 52 HOH HOH . G 5 HOH A 4 304 46 HOH HOH . G 5 HOH A 5 305 132 HOH HOH . G 5 HOH A 6 306 152 HOH HOH . G 5 HOH A 7 307 94 HOH HOH . G 5 HOH A 8 308 62 HOH HOH . G 5 HOH A 9 309 186 HOH HOH . G 5 HOH A 10 310 84 HOH HOH . G 5 HOH A 11 311 155 HOH HOH . G 5 HOH A 12 312 40 HOH HOH . G 5 HOH A 13 313 166 HOH HOH . G 5 HOH A 14 314 38 HOH HOH . G 5 HOH A 15 315 99 HOH HOH . G 5 HOH A 16 316 191 HOH HOH . G 5 HOH A 17 317 138 HOH HOH . G 5 HOH A 18 318 49 HOH HOH . G 5 HOH A 19 319 154 HOH HOH . G 5 HOH A 20 320 29 HOH HOH . G 5 HOH A 21 321 133 HOH HOH . G 5 HOH A 22 322 36 HOH HOH . G 5 HOH A 23 323 90 HOH HOH . G 5 HOH A 24 324 121 HOH HOH . G 5 HOH A 25 325 27 HOH HOH . G 5 HOH A 26 326 156 HOH HOH . G 5 HOH A 27 327 177 HOH HOH . G 5 HOH A 28 328 135 HOH HOH . G 5 HOH A 29 329 19 HOH HOH . G 5 HOH A 30 330 147 HOH HOH . G 5 HOH A 31 331 18 HOH HOH . G 5 HOH A 32 332 117 HOH HOH . G 5 HOH A 33 333 109 HOH HOH . G 5 HOH A 34 334 67 HOH HOH . G 5 HOH A 35 335 1 HOH HOH . G 5 HOH A 36 336 10 HOH HOH . G 5 HOH A 37 337 184 HOH HOH . G 5 HOH A 38 338 69 HOH HOH . G 5 HOH A 39 339 103 HOH HOH . G 5 HOH A 40 340 118 HOH HOH . G 5 HOH A 41 341 41 HOH HOH . G 5 HOH A 42 342 141 HOH HOH . G 5 HOH A 43 343 4 HOH HOH . G 5 HOH A 44 344 66 HOH HOH . G 5 HOH A 45 345 25 HOH HOH . G 5 HOH A 46 346 20 HOH HOH . G 5 HOH A 47 347 8 HOH HOH . G 5 HOH A 48 348 9 HOH HOH . G 5 HOH A 49 349 3 HOH HOH . G 5 HOH A 50 350 58 HOH HOH . G 5 HOH A 51 351 119 HOH HOH . G 5 HOH A 52 352 120 HOH HOH . G 5 HOH A 53 353 26 HOH HOH . G 5 HOH A 54 354 24 HOH HOH . G 5 HOH A 55 355 86 HOH HOH . G 5 HOH A 56 356 97 HOH HOH . G 5 HOH A 57 357 31 HOH HOH . G 5 HOH A 58 358 149 HOH HOH . G 5 HOH A 59 359 6 HOH HOH . G 5 HOH A 60 360 61 HOH HOH . G 5 HOH A 61 361 13 HOH HOH . G 5 HOH A 62 362 116 HOH HOH . G 5 HOH A 63 363 34 HOH HOH . G 5 HOH A 64 364 95 HOH HOH . G 5 HOH A 65 365 35 HOH HOH . G 5 HOH A 66 366 54 HOH HOH . G 5 HOH A 67 367 7 HOH HOH . G 5 HOH A 68 368 22 HOH HOH . G 5 HOH A 69 369 48 HOH HOH . G 5 HOH A 70 370 16 HOH HOH . G 5 HOH A 71 371 5 HOH HOH . G 5 HOH A 72 372 65 HOH HOH . G 5 HOH A 73 373 14 HOH HOH . G 5 HOH A 74 374 50 HOH HOH . G 5 HOH A 75 375 72 HOH HOH . G 5 HOH A 76 376 59 HOH HOH . G 5 HOH A 77 377 80 HOH HOH . G 5 HOH A 78 378 169 HOH HOH . G 5 HOH A 79 379 47 HOH HOH . G 5 HOH A 80 380 55 HOH HOH . G 5 HOH A 81 381 56 HOH HOH . G 5 HOH A 82 382 42 HOH HOH . G 5 HOH A 83 383 37 HOH HOH . G 5 HOH A 84 384 28 HOH HOH . G 5 HOH A 85 385 163 HOH HOH . G 5 HOH A 86 386 77 HOH HOH . G 5 HOH A 87 387 101 HOH HOH . G 5 HOH A 88 388 175 HOH HOH . G 5 HOH A 89 389 93 HOH HOH . G 5 HOH A 90 390 12 HOH HOH . G 5 HOH A 91 391 85 HOH HOH . G 5 HOH A 92 392 63 HOH HOH . G 5 HOH A 93 393 179 HOH HOH . G 5 HOH A 94 394 188 HOH HOH . G 5 HOH A 95 395 113 HOH HOH . G 5 HOH A 96 396 124 HOH HOH . G 5 HOH A 97 397 30 HOH HOH . G 5 HOH A 98 398 153 HOH HOH . G 5 HOH A 99 399 45 HOH HOH . G 5 HOH A 100 400 83 HOH HOH . G 5 HOH A 101 401 142 HOH HOH . G 5 HOH A 102 402 168 HOH HOH . G 5 HOH A 103 403 88 HOH HOH . G 5 HOH A 104 404 33 HOH HOH . G 5 HOH A 105 405 126 HOH HOH . G 5 HOH A 106 406 23 HOH HOH . G 5 HOH A 107 407 73 HOH HOH . G 5 HOH A 108 408 180 HOH HOH . G 5 HOH A 109 409 111 HOH HOH . G 5 HOH A 110 410 185 HOH HOH . G 5 HOH A 111 411 115 HOH HOH . G 5 HOH A 112 412 106 HOH HOH . G 5 HOH A 113 413 96 HOH HOH . G 5 HOH A 114 414 51 HOH HOH . G 5 HOH A 115 415 105 HOH HOH . G 5 HOH A 116 416 53 HOH HOH . G 5 HOH A 117 417 11 HOH HOH . G 5 HOH A 118 418 162 HOH HOH . G 5 HOH A 119 419 91 HOH HOH . G 5 HOH A 120 420 68 HOH HOH . G 5 HOH A 121 421 17 HOH HOH . G 5 HOH A 122 422 140 HOH HOH . G 5 HOH A 123 423 174 HOH HOH . G 5 HOH A 124 424 159 HOH HOH . G 5 HOH A 125 425 78 HOH HOH . G 5 HOH A 126 426 150 HOH HOH . G 5 HOH A 127 427 57 HOH HOH . G 5 HOH A 128 428 75 HOH HOH . G 5 HOH A 129 429 122 HOH HOH . G 5 HOH A 130 430 2 HOH HOH . G 5 HOH A 131 431 128 HOH HOH . G 5 HOH A 132 432 143 HOH HOH . G 5 HOH A 133 433 145 HOH HOH . G 5 HOH A 134 434 144 HOH HOH . G 5 HOH A 135 435 161 HOH HOH . G 5 HOH A 136 436 129 HOH HOH . G 5 HOH A 137 437 74 HOH HOH . G 5 HOH A 138 438 176 HOH HOH . G 5 HOH A 139 439 39 HOH HOH . G 5 HOH A 140 440 87 HOH HOH . G 5 HOH A 141 441 125 HOH HOH . G 5 HOH A 142 442 189 HOH HOH . G 5 HOH A 143 443 187 HOH HOH . G 5 HOH A 144 444 21 HOH HOH . G 5 HOH A 145 445 79 HOH HOH . G 5 HOH A 146 446 148 HOH HOH . G 5 HOH A 147 447 190 HOH HOH . G 5 HOH A 148 448 102 HOH HOH . G 5 HOH A 149 449 15 HOH HOH . G 5 HOH A 150 450 165 HOH HOH . G 5 HOH A 151 451 114 HOH HOH . G 5 HOH A 152 452 170 HOH HOH . G 5 HOH A 153 453 89 HOH HOH . G 5 HOH A 154 454 104 HOH HOH . G 5 HOH A 155 455 172 HOH HOH . G 5 HOH A 156 456 92 HOH HOH . G 5 HOH A 157 457 146 HOH HOH . G 5 HOH A 158 458 64 HOH HOH . G 5 HOH A 159 459 139 HOH HOH . G 5 HOH A 160 460 157 HOH HOH . G 5 HOH A 161 461 123 HOH HOH . G 5 HOH A 162 462 127 HOH HOH . G 5 HOH A 163 463 100 HOH HOH . G 5 HOH A 164 464 108 HOH HOH . G 5 HOH A 165 465 70 HOH HOH . G 5 HOH A 166 466 181 HOH HOH . G 5 HOH A 167 467 71 HOH HOH . G 5 HOH A 168 468 167 HOH HOH . G 5 HOH A 169 469 98 HOH HOH . G 5 HOH A 170 470 171 HOH HOH . G 5 HOH A 171 471 164 HOH HOH . G 5 HOH A 172 472 60 HOH HOH . G 5 HOH A 173 473 137 HOH HOH . G 5 HOH A 174 474 110 HOH HOH . G 5 HOH A 175 475 76 HOH HOH . G 5 HOH A 176 476 112 HOH HOH . G 5 HOH A 177 477 43 HOH HOH . G 5 HOH A 178 478 32 HOH HOH . G 5 HOH A 179 479 160 HOH HOH . G 5 HOH A 180 480 81 HOH HOH . G 5 HOH A 181 481 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XB1 . . . B 2 35.45 -36.209 7.814 1 58.98 ? C10 XB1 201 A 1 HETATM 2 C C15 XB1 . . . B 2 39.07 -39.736 5.199 1 48.18 ? C15 XB1 201 A 1 HETATM 3 C C17 XB1 . . . B 2 40.647 -38.138 4.392 1 45.66 ? C17 XB1 201 A 1 HETATM 4 C C20 XB1 . . . B 2 39.63 -38.35 1.747 1 62.27 ? C20 XB1 201 A 1 HETATM 5 C C21 XB1 . . . B 2 39.217 -39.331 2.868 1 54.27 ? C21 XB1 201 A 1 HETATM 6 C C26 XB1 . . . B 2 34.618 -29.849 8.481 1 53.22 ? C26 XB1 201 A 1 HETATM 7 C C28 XB1 . . . B 2 34.953 -28.628 10.549 1 56.96 ? C28 XB1 201 A 1 HETATM 8 C C02 XB1 . . . B 2 33.911 -30.926 10.54 1 61.03 ? C02 XB1 201 A 1 HETATM 9 C C03 XB1 . . . B 2 33.489 -32.001 9.801 1 63.66 ? C03 XB1 201 A 1 HETATM 10 C C04 XB1 . . . B 2 33.637 -32.015 8.329 1 59.76 ? C04 XB1 201 A 1 HETATM 11 C C06 XB1 . . . B 2 32.72 -33.883 8.977 1 66.47 ? C06 XB1 201 A 1 HETATM 12 C C08 XB1 . . . B 2 33.35 -36.774 9.394 1 72.9 ? C08 XB1 201 A 1 HETATM 13 C C09 XB1 . . . B 2 34.833 -36.284 9.273 1 69.39 ? C09 XB1 201 A 1 HETATM 14 C C12 XB1 . . . B 2 36.098 -38.533 6.928 1 62.68 ? C12 XB1 201 A 1 HETATM 15 C C14 XB1 . . . B 2 37.567 -39.875 5.487 1 52.96 ? C14 XB1 201 A 1 HETATM 16 C C18 XB1 . . . B 2 40.994 -37.117 3.292 1 59.15 ? C18 XB1 201 A 1 HETATM 17 C C25 XB1 . . . B 2 34.383 -30.87 6.226 1 52.9 ? C25 XB1 201 A 1 HETATM 18 N N05 XB1 . . . B 2 33.17 -33.175 7.789 1 64.86 ? N05 XB1 201 A 1 HETATM 19 N N11 XB1 . . . B 2 35.152 -37.37 6.923 1 68.32 ? N11 XB1 201 A 1 HETATM 20 N N13 XB1 . . . B 2 37.003 -38.541 5.795 1 64.27 ? N13 XB1 201 A 1 HETATM 21 N N16 XB1 . . . B 2 39.273 -38.686 4.213 1 50.09 ? N16 XB1 201 A 1 HETATM 22 N N23 XB1 . . . B 2 32.897 -33.256 10.141 1 61.58 ? N23 XB1 201 A 1 HETATM 23 N N24 XB1 . . . B 2 34.211 -30.897 7.673 1 54.2 ? N24 XB1 201 A 1 HETATM 24 N N27 XB1 . . . B 2 34.493 -29.807 9.868 1 57.55 ? N27 XB1 201 A 1 HETATM 25 O O01 XB1 . . . B 2 33.829 -30.783 11.915 1 61.17 ? O01 XB1 201 A 1 HETATM 26 O O19 XB1 . . . B 2 40.018 -37.077 2.259 1 64.72 ? O19 XB1 201 A 1 HETATM 27 O O29 XB1 . . . B 2 35.146 -28.834 7.904 1 55.19 ? O29 XB1 201 A 1 HETATM 28 S S07 XB1 . . . B 2 32.026 -35.533 8.819 1 72.33 ? S07 XB1 201 A 1 HETATM 29 S S22 XB1 . . . B 2 35.071 -40.174 6.768 1 51.3 ? S22 XB1 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 29 #