data_7KXT # _model_server_result.job_id yCeGb83E-iHY5kxEMJB6kA _model_server_result.datetime_utc '2024-12-23 09:40:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kxt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7KXT # _exptl.entry_id 7KXT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.57 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(4-fluorophenyl)methyl]-N-{1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl}-1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.11 _cell.angle_gamma 90 _cell.entry_id 7KXT _cell.length_a 81.47 _cell.length_b 49.94 _cell.length_c 105.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KXT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EB 1 1 B,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,FB 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 EA N N # _chem_comp.formula 'C28 H31 F N4 O' _chem_comp.formula_weight 458.57 _chem_comp.id XB7 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(4-fluorophenyl)methyl]-N-{1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl}-1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 XB7 sing 376 n n O1 C2 XB7 sing 377 n n C3 C2 XB7 doub 378 n y C3 C4 XB7 sing 379 n y C2 C28 XB7 sing 380 n y C4 C5 XB7 doub 381 n y C28 C27 XB7 doub 382 n y C5 C27 XB7 sing 383 n y C5 C6 XB7 sing 384 n n C7 C6 XB7 sing 385 n n C7 N1 XB7 sing 386 n n C12 N1 XB7 sing 387 n n C12 C11 XB7 sing 388 n n N1 C8 XB7 sing 389 n n C11 C10 XB7 sing 390 n n C8 C9 XB7 sing 391 n n F1 C24 XB7 sing 392 n n C10 C9 XB7 sing 393 n n C10 N2 XB7 sing 394 n n C24 C23 XB7 doub 395 n y C24 C25 XB7 sing 396 n y C23 C22 XB7 sing 397 n y N3 C13 XB7 doub 398 n y N3 C14 XB7 sing 399 n y C25 C26 XB7 doub 400 n y N2 C13 XB7 sing 401 n n C13 N4 XB7 sing 402 n y C15 C14 XB7 doub 403 n y C15 C16 XB7 sing 404 n y C22 C21 XB7 doub 405 n y C14 C19 XB7 sing 406 n y C26 C21 XB7 sing 407 n y C21 C20 XB7 sing 408 n n C16 C17 XB7 doub 409 n y N4 C19 XB7 sing 410 n y N4 C20 XB7 sing 411 n n C19 C18 XB7 doub 412 n y C17 C18 XB7 sing 413 n y C1 H1 XB7 sing 414 n n C1 H2 XB7 sing 415 n n C1 H3 XB7 sing 416 n n C10 H4 XB7 sing 417 n n C11 H5 XB7 sing 418 n n C11 H6 XB7 sing 419 n n C12 H7 XB7 sing 420 n n C12 H8 XB7 sing 421 n n C15 H9 XB7 sing 422 n n C16 H10 XB7 sing 423 n n C17 H11 XB7 sing 424 n n C18 H12 XB7 sing 425 n n C20 H13 XB7 sing 426 n n C20 H14 XB7 sing 427 n n C22 H15 XB7 sing 428 n n C23 H16 XB7 sing 429 n n C25 H17 XB7 sing 430 n n C26 H18 XB7 sing 431 n n C27 H19 XB7 sing 432 n n C28 H20 XB7 sing 433 n n C3 H21 XB7 sing 434 n n C4 H22 XB7 sing 435 n n C6 H23 XB7 sing 436 n n C6 H24 XB7 sing 437 n n C7 H25 XB7 sing 438 n n C7 H26 XB7 sing 439 n n C8 H27 XB7 sing 440 n n C8 H28 XB7 sing 441 n n C9 H29 XB7 sing 442 n n C9 H30 XB7 sing 443 n n N2 H32 XB7 sing 444 n n # _atom_sites.entry_id 7KXT _atom_sites.fract_transf_matrix[1][1] 0.012274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003314 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XB7 A 1 501 501 XB7 UNL . D 3 UNX A 1 502 8 UNX UNX . E 3 UNX A 1 503 9 UNX UNX . F 3 UNX A 1 504 10 UNX UNX . G 3 UNX A 1 505 12 UNX UNX . H 3 UNX A 1 506 13 UNX UNX . I 3 UNX A 1 507 14 UNX UNX . J 3 UNX A 1 508 16 UNX UNX . K 3 UNX A 1 509 17 UNX UNX . L 3 UNX A 1 510 18 UNX UNX . M 3 UNX A 1 511 19 UNX UNX . N 3 UNX A 1 512 20 UNX UNX . O 3 UNX A 1 513 21 UNX UNX . P 3 UNX A 1 514 22 UNX UNX . Q 3 UNX A 1 515 23 UNX UNX . R 3 UNX A 1 516 35 UNX UNX . S 3 UNX A 1 517 37 UNX UNX . T 3 UNX A 1 518 39 UNX UNX . U 3 UNX A 1 519 44 UNX UNX . V 3 UNX A 1 520 46 UNX UNX . W 3 UNX A 1 521 47 UNX UNX . X 3 UNX A 1 522 48 UNX UNX . Y 3 UNX A 1 523 49 UNX UNX . Z 3 UNX A 1 524 50 UNX UNX . AA 3 UNX A 1 525 51 UNX UNX . BA 3 UNX A 1 526 52 UNX UNX . CA 3 UNX A 1 527 54 UNX UNX . DA 3 UNX A 1 528 55 UNX UNX . EA 2 XB7 B 1 501 501 XB7 UNL . FA 3 UNX B 1 502 1 UNX UNX . GA 3 UNX B 1 503 2 UNX UNX . HA 3 UNX B 1 504 3 UNX UNX . IA 3 UNX B 1 505 4 UNX UNX . JA 3 UNX B 1 506 5 UNX UNX . KA 3 UNX B 1 507 6 UNX UNX . LA 3 UNX B 1 508 7 UNX UNX . MA 3 UNX B 1 509 24 UNX UNX . NA 3 UNX B 1 510 26 UNX UNX . OA 3 UNX B 1 511 27 UNX UNX . PA 3 UNX B 1 512 28 UNX UNX . QA 3 UNX B 1 513 29 UNX UNX . RA 3 UNX B 1 514 30 UNX UNX . SA 3 UNX B 1 515 31 UNX UNX . TA 3 UNX B 1 516 32 UNX UNX . UA 3 UNX B 1 517 33 UNX UNX . VA 3 UNX B 1 518 34 UNX UNX . WA 3 UNX B 1 519 36 UNX UNX . XA 3 UNX B 1 520 38 UNX UNX . YA 3 UNX B 1 521 40 UNX UNX . ZA 3 UNX B 1 522 41 UNX UNX . AB 3 UNX B 1 523 42 UNX UNX . BB 3 UNX B 1 524 43 UNX UNX . CB 3 UNX B 1 525 45 UNX UNX . DB 3 UNX B 1 526 53 UNX UNX . EB 4 HOH A 1 601 67 HOH HOH . EB 4 HOH A 2 602 74 HOH HOH . EB 4 HOH A 3 603 153 HOH HOH . EB 4 HOH A 4 604 16 HOH HOH . EB 4 HOH A 5 605 45 HOH HOH . EB 4 HOH A 6 606 128 HOH HOH . EB 4 HOH A 7 607 86 HOH HOH . EB 4 HOH A 8 608 50 HOH HOH . EB 4 HOH A 9 609 9 HOH HOH . EB 4 HOH A 10 610 137 HOH HOH . EB 4 HOH A 11 611 11 HOH HOH . EB 4 HOH A 12 612 93 HOH HOH . EB 4 HOH A 13 613 120 HOH HOH . EB 4 HOH A 14 614 131 HOH HOH . EB 4 HOH A 15 615 76 HOH HOH . EB 4 HOH A 16 616 10 HOH HOH . EB 4 HOH A 17 617 61 HOH HOH . EB 4 HOH A 18 618 19 HOH HOH . EB 4 HOH A 19 619 20 HOH HOH . EB 4 HOH A 20 620 132 HOH HOH . EB 4 HOH A 21 621 88 HOH HOH . EB 4 HOH A 22 622 13 HOH HOH . EB 4 HOH A 23 623 146 HOH HOH . EB 4 HOH A 24 624 123 HOH HOH . EB 4 HOH A 25 625 28 HOH HOH . EB 4 HOH A 26 626 125 HOH HOH . EB 4 HOH A 27 627 36 HOH HOH . EB 4 HOH A 28 628 97 HOH HOH . EB 4 HOH A 29 629 27 HOH HOH . EB 4 HOH A 30 630 129 HOH HOH . EB 4 HOH A 31 631 40 HOH HOH . EB 4 HOH A 32 632 127 HOH HOH . EB 4 HOH A 33 633 54 HOH HOH . EB 4 HOH A 34 634 8 HOH HOH . EB 4 HOH A 35 635 58 HOH HOH . EB 4 HOH A 36 636 135 HOH HOH . EB 4 HOH A 37 637 78 HOH HOH . EB 4 HOH A 38 638 130 HOH HOH . EB 4 HOH A 39 639 92 HOH HOH . EB 4 HOH A 40 640 147 HOH HOH . EB 4 HOH A 41 641 69 HOH HOH . EB 4 HOH A 42 642 94 HOH HOH . EB 4 HOH A 43 643 51 HOH HOH . EB 4 HOH A 44 644 150 HOH HOH . EB 4 HOH A 45 645 63 HOH HOH . EB 4 HOH A 46 646 34 HOH HOH . EB 4 HOH A 47 647 95 HOH HOH . EB 4 HOH A 48 648 122 HOH HOH . EB 4 HOH A 49 649 136 HOH HOH . EB 4 HOH A 50 650 81 HOH HOH . EB 4 HOH A 51 651 134 HOH HOH . FB 4 HOH B 1 601 115 HOH HOH . FB 4 HOH B 2 602 90 HOH HOH . FB 4 HOH B 3 603 142 HOH HOH . FB 4 HOH B 4 604 23 HOH HOH . FB 4 HOH B 5 605 3 HOH HOH . FB 4 HOH B 6 606 48 HOH HOH . FB 4 HOH B 7 607 151 HOH HOH . FB 4 HOH B 8 608 43 HOH HOH . FB 4 HOH B 9 609 21 HOH HOH . FB 4 HOH B 10 610 87 HOH HOH . FB 4 HOH B 11 611 77 HOH HOH . FB 4 HOH B 12 612 143 HOH HOH . FB 4 HOH B 13 613 91 HOH HOH . FB 4 HOH B 14 614 108 HOH HOH . FB 4 HOH B 15 615 148 HOH HOH . FB 4 HOH B 16 616 79 HOH HOH . FB 4 HOH B 17 617 114 HOH HOH . FB 4 HOH B 18 618 98 HOH HOH . FB 4 HOH B 19 619 105 HOH HOH . FB 4 HOH B 20 620 116 HOH HOH . FB 4 HOH B 21 621 29 HOH HOH . FB 4 HOH B 22 622 110 HOH HOH . FB 4 HOH B 23 623 56 HOH HOH . FB 4 HOH B 24 624 101 HOH HOH . FB 4 HOH B 25 625 112 HOH HOH . FB 4 HOH B 26 626 100 HOH HOH . FB 4 HOH B 27 627 26 HOH HOH . FB 4 HOH B 28 628 152 HOH HOH . FB 4 HOH B 29 629 113 HOH HOH . FB 4 HOH B 30 630 62 HOH HOH . FB 4 HOH B 31 631 145 HOH HOH . FB 4 HOH B 32 632 89 HOH HOH . FB 4 HOH B 33 633 71 HOH HOH . FB 4 HOH B 34 634 119 HOH HOH . FB 4 HOH B 35 635 59 HOH HOH . FB 4 HOH B 36 636 117 HOH HOH . FB 4 HOH B 37 637 32 HOH HOH . FB 4 HOH B 38 638 5 HOH HOH . FB 4 HOH B 39 639 109 HOH HOH . FB 4 HOH B 40 640 99 HOH HOH . FB 4 HOH B 41 641 60 HOH HOH . FB 4 HOH B 42 642 52 HOH HOH . FB 4 HOH B 43 643 102 HOH HOH . FB 4 HOH B 44 644 103 HOH HOH . FB 4 HOH B 45 645 118 HOH HOH . FB 4 HOH B 46 646 141 HOH HOH . FB 4 HOH B 47 647 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XB7 . . . C 2 -3.601 -15.151 -34.319 1 49.44 ? C1 XB7 501 A 1 HETATM 2 C C10 XB7 . . . C 2 -11.319 -12.529 -26.198 1 39.74 ? C10 XB7 501 A 1 HETATM 3 C C11 XB7 . . . C 2 -11.369 -11.838 -27.532 1 41.73 ? C11 XB7 501 A 1 HETATM 4 C C12 XB7 . . . C 2 -10.613 -12.639 -28.567 1 41.83 ? C12 XB7 501 A 1 HETATM 5 C C13 XB7 . . . C 2 -13.36 -12.056 -24.856 1 50.8 ? C13 XB7 501 A 1 HETATM 6 C C14 XB7 . . . C 2 -15.312 -12.947 -24.724 1 52.15 ? C14 XB7 501 A 1 HETATM 7 C C15 XB7 . . . C 2 -16.441 -13.738 -24.854 1 51.38 ? C15 XB7 501 A 1 HETATM 8 C C16 XB7 . . . C 2 -17.557 -13.382 -24.133 1 47.17 ? C16 XB7 501 A 1 HETATM 9 C C17 XB7 . . . C 2 -17.566 -12.266 -23.297 1 48.36 ? C17 XB7 501 A 1 HETATM 10 C C18 XB7 . . . C 2 -16.454 -11.465 -23.154 1 54.35 ? C18 XB7 501 A 1 HETATM 11 C C19 XB7 . . . C 2 -15.336 -11.831 -23.882 1 52.56 ? C19 XB7 501 A 1 HETATM 12 C C2 XB7 . . . C 2 -4.846 -15.361 -32.281 1 45.02 ? C2 XB7 501 A 1 HETATM 13 C C20 XB7 . . . C 2 -13.621 -10.056 -23.287 1 58.21 ? C20 XB7 501 A 1 HETATM 14 C C21 XB7 . . . C 2 -13.726 -8.856 -24.199 1 60.47 ? C21 XB7 501 A 1 HETATM 15 C C22 XB7 . . . C 2 -14.927 -8.533 -24.796 1 58.46 ? C22 XB7 501 A 1 HETATM 16 C C23 XB7 . . . C 2 -15.042 -7.443 -25.643 1 57.61 ? C23 XB7 501 A 1 HETATM 17 C C24 XB7 . . . C 2 -13.926 -6.7 -25.885 1 65.66 ? C24 XB7 501 A 1 HETATM 18 C C25 XB7 . . . C 2 -12.712 -6.987 -25.328 1 69.02 ? C25 XB7 501 A 1 HETATM 19 C C26 XB7 . . . C 2 -12.622 -8.079 -24.48 1 61.13 ? C26 XB7 501 A 1 HETATM 20 C C27 XB7 . . . C 2 -5.878 -15.481 -30.122 1 37.83 ? C27 XB7 501 A 1 HETATM 21 C C28 XB7 . . . C 2 -5.197 -16.096 -31.16 1 36.85 ? C28 XB7 501 A 1 HETATM 22 C C3 XB7 . . . C 2 -5.177 -14.015 -32.352 1 37.16 ? C3 XB7 501 A 1 HETATM 23 C C4 XB7 . . . C 2 -5.859 -13.421 -31.302 1 45.32 ? C4 XB7 501 A 1 HETATM 24 C C5 XB7 . . . C 2 -6.22 -14.139 -30.171 1 47.34 ? C5 XB7 501 A 1 HETATM 25 C C6 XB7 . . . C 2 -6.958 -13.478 -29.03 1 41.99 ? C6 XB7 501 A 1 HETATM 26 C C7 XB7 . . . C 2 -8.466 -13.52 -29.229 1 39.97 ? C7 XB7 501 A 1 HETATM 27 C C8 XB7 . . . C 2 -9.143 -13.536 -26.895 1 49.6 ? C8 XB7 501 A 1 HETATM 28 C C9 XB7 . . . C 2 -9.896 -12.795 -25.791 1 40.04 ? C9 XB7 501 A 1 HETATM 29 F F1 XB7 . . . C 2 -14.024 -5.627 -26.722 1 57.71 ? F1 XB7 501 A 1 HETATM 30 N N1 XB7 . . . C 2 -9.216 -12.82 -28.178 1 48.64 ? N1 XB7 501 A 1 HETATM 31 N N2 XB7 . . . C 2 -12.053 -11.776 -25.189 1 47.47 ? N2 XB7 501 A 1 HETATM 32 N N3 XB7 . . . C 2 -14.061 -13.07 -25.329 1 47.94 ? N3 XB7 501 A 1 HETATM 33 N N4 XB7 . . . C 2 -14.073 -11.266 -23.969 1 52.76 ? N4 XB7 501 A 1 HETATM 34 O O1 XB7 . . . C 2 -4.157 -15.973 -33.296 1 53.25 ? O1 XB7 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #