data_7KXZ # _model_server_result.job_id feX6EYjyed6vtKvdVBIWgw _model_server_result.datetime_utc '2024-11-21 18:11:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kxz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 7KXZ # _exptl.entry_id 7KXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 542.675 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "(20R)-10,15,20-trimethyl-2-[(4-methylpiperazin-1-yl)methyl]-18,19,20,21-tetrahydro-15H,17H-12,8-(metheno)pyrazolo[3',4':2,3][1,5,10,12]oxatriazacycloheptadecino[12,11-a]benzimidazol-7(6H)-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KXZ _cell.length_a 145.293 _cell.length_b 145.293 _cell.length_c 145.293 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H38 N8 O2' _chem_comp.formula_weight 542.675 _chem_comp.id XA4 _chem_comp.mon_nstd_flag . _chem_comp.name "(20R)-10,15,20-trimethyl-2-[(4-methylpiperazin-1-yl)methyl]-18,19,20,21-tetrahydro-15H,17H-12,8-(metheno)pyrazolo[3',4':2,3][1,5,10,12]oxatriazacycloheptadecino[12,11-a]benzimidazol-7(6H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N17 C18 XA4 doub 376 n y N17 N15 XA4 sing 377 n y C18 C06 XA4 sing 378 n y C16 N15 XA4 sing 379 n n N15 C07 XA4 sing 380 n y C06 C07 XA4 doub 381 n y C06 C05 XA4 sing 382 n n N19 C05 XA4 doub 383 n y N19 C20 XA4 sing 384 n y C21 C20 XA4 sing 385 n n C07 O08 XA4 sing 386 n n C05 C04 XA4 sing 387 n y C20 C22 XA4 doub 388 n y O08 C09 XA4 sing 389 n n C04 C03 XA4 doub 390 n y C22 C03 XA4 sing 391 n y C09 C10 XA4 sing 392 n n C03 C02 XA4 sing 393 n n C10 C11 XA4 sing 394 n n C02 O01 XA4 doub 395 n n C02 N23 XA4 sing 396 n n C11 C12 XA4 sing 397 n n N23 C24 XA4 doub 398 n n C12 C14 XA4 sing 399 n n C12 C13 XA4 sing 400 n n C14 N25 XA4 sing 401 n n C24 N25 XA4 sing 402 n n C24 N40 XA4 sing 403 n n N25 C26 XA4 sing 404 n n N40 C39 XA4 sing 405 n n C26 C39 XA4 doub 406 n y C26 C27 XA4 sing 407 n y C39 C38 XA4 sing 408 n y C27 C28 XA4 doub 409 n y C38 C37 XA4 doub 410 n y C28 C37 XA4 sing 411 n y C28 C29 XA4 sing 412 n n C29 N30 XA4 sing 413 n n N30 C36 XA4 sing 414 n n N30 C31 XA4 sing 415 n n C36 C35 XA4 sing 416 n n C31 C32 XA4 sing 417 n n C35 N33 XA4 sing 418 n n C32 N33 XA4 sing 419 n n N33 C34 XA4 sing 420 n n C18 H1 XA4 sing 421 n n C16 H2 XA4 sing 422 n n C16 H3 XA4 sing 423 n n C16 H4 XA4 sing 424 n n C14 H5 XA4 sing 425 n n C14 H6 XA4 sing 426 n n C13 H7 XA4 sing 427 n n C13 H8 XA4 sing 428 n n C13 H9 XA4 sing 429 n n C12 H10 XA4 sing 430 n n C10 H11 XA4 sing 431 n n C10 H12 XA4 sing 432 n n C11 H13 XA4 sing 433 n n C11 H14 XA4 sing 434 n n C21 H15 XA4 sing 435 n n C21 H16 XA4 sing 436 n n C21 H17 XA4 sing 437 n n C22 H18 XA4 sing 438 n n C27 H19 XA4 sing 439 n n C29 H20 XA4 sing 440 n n C29 H21 XA4 sing 441 n n C31 H23 XA4 sing 442 n n C31 H24 XA4 sing 443 n n C04 H25 XA4 sing 444 n n C09 H26 XA4 sing 445 n n C09 H27 XA4 sing 446 n n C32 H28 XA4 sing 447 n n C32 H29 XA4 sing 448 n n C34 H30 XA4 sing 449 n n C34 H31 XA4 sing 450 n n C34 H32 XA4 sing 451 n n C35 H33 XA4 sing 452 n n C35 H34 XA4 sing 453 n n C36 H35 XA4 sing 454 n n C36 H36 XA4 sing 455 n n C37 H37 XA4 sing 456 n n C38 H38 XA4 sing 457 n n N40 H22 XA4 sing 458 n n # _atom_sites.entry_id 7KXZ _atom_sites.fract_transf_matrix[1][1] 0.006883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 1101 1099 CL CL . C 3 XA4 A 1 1102 1101 XA4 BI4 . D 4 HOH A 1 1201 50 HOH HOH . D 4 HOH A 2 1202 30 HOH HOH . D 4 HOH A 3 1203 6 HOH HOH . D 4 HOH A 4 1204 40 HOH HOH . D 4 HOH A 5 1205 20 HOH HOH . D 4 HOH A 6 1206 25 HOH HOH . D 4 HOH A 7 1207 29 HOH HOH . D 4 HOH A 8 1208 53 HOH HOH . D 4 HOH A 9 1209 21 HOH HOH . D 4 HOH A 10 1210 46 HOH HOH . D 4 HOH A 11 1211 16 HOH HOH . D 4 HOH A 12 1212 4 HOH HOH . D 4 HOH A 13 1213 32 HOH HOH . D 4 HOH A 14 1214 24 HOH HOH . D 4 HOH A 15 1215 13 HOH HOH . D 4 HOH A 16 1216 5 HOH HOH . D 4 HOH A 17 1217 52 HOH HOH . D 4 HOH A 18 1218 17 HOH HOH . D 4 HOH A 19 1219 27 HOH HOH . D 4 HOH A 20 1220 7 HOH HOH . D 4 HOH A 21 1221 14 HOH HOH . D 4 HOH A 22 1222 28 HOH HOH . D 4 HOH A 23 1223 42 HOH HOH . D 4 HOH A 24 1224 39 HOH HOH . D 4 HOH A 25 1225 3 HOH HOH . D 4 HOH A 26 1226 48 HOH HOH . D 4 HOH A 27 1227 31 HOH HOH . D 4 HOH A 28 1228 1 HOH HOH . D 4 HOH A 29 1229 2 HOH HOH . D 4 HOH A 30 1230 37 HOH HOH . D 4 HOH A 31 1231 9 HOH HOH . D 4 HOH A 32 1232 41 HOH HOH . D 4 HOH A 33 1233 23 HOH HOH . D 4 HOH A 34 1234 43 HOH HOH . D 4 HOH A 35 1235 11 HOH HOH . D 4 HOH A 36 1236 51 HOH HOH . D 4 HOH A 37 1237 19 HOH HOH . D 4 HOH A 38 1238 49 HOH HOH . D 4 HOH A 39 1239 47 HOH HOH . D 4 HOH A 40 1240 15 HOH HOH . D 4 HOH A 41 1241 33 HOH HOH . D 4 HOH A 42 1242 22 HOH HOH . D 4 HOH A 43 1243 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 XA4 . . . C 3 -1.916 52.528 -26.806 1 69.88 ? C18 XA4 1102 A 1 HETATM 2 C C16 XA4 . . . C 3 -3.865 49.494 -26.05 1 77.55 ? C16 XA4 1102 A 1 HETATM 3 C C14 XA4 . . . C 3 -0.475 49.801 -19.474 1 69.21 ? C14 XA4 1102 A 1 HETATM 4 C C13 XA4 . . . C 3 -2.802 50.62 -18.902 1 64.09 ? C13 XA4 1102 A 1 HETATM 5 C C12 XA4 . . . C 3 -1.86 50.203 -20.03 1 68.05 ? C12 XA4 1102 A 1 HETATM 6 C C10 XA4 . . . C 3 -3.295 49.468 -22.016 1 80.82 ? C10 XA4 1102 A 1 HETATM 7 C C11 XA4 . . . C 3 -2.37 49.042 -20.879 1 79.79 ? C11 XA4 1102 A 1 HETATM 8 N N19 XA4 . . . C 3 0.004 54.39 -25.263 1 66.24 ? N19 XA4 1102 A 1 HETATM 9 C C20 XA4 . . . C 3 0.872 55.196 -24.59 1 58.7 ? C20 XA4 1102 A 1 HETATM 10 C C21 XA4 . . . C 3 1.289 56.5 -25.244 1 59.83 ? C21 XA4 1102 A 1 HETATM 11 C C22 XA4 . . . C 3 1.369 54.845 -23.304 1 59.49 ? C22 XA4 1102 A 1 HETATM 12 C C24 XA4 . . . C 3 0.851 51.903 -19.38 1 64.9 ? C24 XA4 1102 A 1 HETATM 13 C C26 XA4 . . . C 3 0.631 50.877 -17.296 1 66.93 ? C26 XA4 1102 A 1 HETATM 14 C C27 XA4 . . . C 3 0.359 50.025 -16.195 1 72.73 ? C27 XA4 1102 A 1 HETATM 15 C C28 XA4 . . . C 3 0.839 50.365 -14.897 1 78.48 ? C28 XA4 1102 A 1 HETATM 16 C C29 XA4 . . . C 3 0.562 49.447 -13.692 1 86.15 ? C29 XA4 1102 A 1 HETATM 17 N N30 XA4 . . . C 3 -0.893 49.272 -13.555 1 98.98 ? N30 XA4 1102 A 1 HETATM 18 C C31 XA4 . . . C 3 -1.596 50.605 -13.431 1 92.09 ? C31 XA4 1102 A 1 HETATM 19 C C02 XA4 . . . C 3 1.37 53.192 -21.359 1 64.15 ? C02 XA4 1102 A 1 HETATM 20 C C03 XA4 . . . C 3 1.016 53.638 -22.719 1 60.27 ? C03 XA4 1102 A 1 HETATM 21 C C04 XA4 . . . C 3 0.08 52.831 -23.422 1 64.11 ? C04 XA4 1102 A 1 HETATM 22 C C05 XA4 . . . C 3 -0.41 53.199 -24.722 1 69.12 ? C05 XA4 1102 A 1 HETATM 23 C C06 XA4 . . . C 3 -1.399 52.297 -25.437 1 71.68 ? C06 XA4 1102 A 1 HETATM 24 C C07 XA4 . . . C 3 -2.131 51.147 -25.074 1 74.84 ? C07 XA4 1102 A 1 HETATM 25 C C09 XA4 . . . C 3 -2.945 50.785 -22.781 1 69.91 ? C09 XA4 1102 A 1 HETATM 26 C C32 XA4 . . . C 3 -3.033 50.594 -12.903 1 99.84 ? C32 XA4 1102 A 1 HETATM 27 C C34 XA4 . . . C 3 -3.92 48.387 -12.574 1 101.1 ? C34 XA4 1102 A 1 HETATM 28 C C35 XA4 . . . C 3 -1.989 49.012 -11.301 1 106.1 ? C35 XA4 1102 A 1 HETATM 29 C C36 XA4 . . . C 3 -1.166 48.372 -12.4 1 106.63 ? C36 XA4 1102 A 1 HETATM 30 C C37 XA4 . . . C 3 1.585 51.557 -14.753 1 71.4 ? C37 XA4 1102 A 1 HETATM 31 C C38 XA4 . . . C 3 1.865 52.415 -15.839 1 64.94 ? C38 XA4 1102 A 1 HETATM 32 C C39 XA4 . . . C 3 1.374 52.051 -17.12 1 65.25 ? C39 XA4 1102 A 1 HETATM 33 N N15 XA4 . . . C 3 -2.954 50.695 -26.057 1 79.78 ? N15 XA4 1102 A 1 HETATM 34 N N17 XA4 . . . C 3 -2.836 51.551 -27.164 1 76.95 ? N17 XA4 1102 A 1 HETATM 35 N N23 XA4 . . . C 3 0.682 52.223 -20.618 1 62.07 ? N23 XA4 1102 A 1 HETATM 36 N N25 XA4 . . . C 3 0.29 50.788 -18.675 1 67.67 ? N25 XA4 1102 A 1 HETATM 37 N N33 XA4 . . . C 3 -3.276 49.504 -11.885 1 104.52 ? N33 XA4 1102 A 1 HETATM 38 N N40 XA4 . . . C 3 1.491 52.692 -18.365 1 59.95 ? N40 XA4 1102 A 1 HETATM 39 O O01 XA4 . . . C 3 2.29 53.795 -20.7 1 57.64 ? O01 XA4 1102 A 1 HETATM 40 O O08 XA4 . . . C 3 -1.99 50.53 -23.815 1 74.06 ? O08 XA4 1102 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #