data_7KY0
#
_model_server_result.job_id            2trxxyG_1qYxJuOTjRL9qg 
_model_server_result.datetime_utc      '2024-11-09 02:34:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ky0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1101}' 
#
_entry.id    7KY0 
#
_exptl.entry_id    7KY0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              542.675 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(20R)-10,15,20-trimethyl-2-[(4-methylpiperazin-1-yl)methyl]-18,19,20,21-tetrahydro-15H,17H-12,8-(metheno)pyrazolo[3',4':2,3][1,5,10,12]oxatriazacycloheptadecino[12,11-a]benzimidazol-7(6H)-one" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.07 
_cell.angle_gamma         90 
_cell.entry_id            7KY0 
_cell.length_a            70.221 
_cell.length_b            100.729 
_cell.length_c            86.789 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KY0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C30 H38 N8 O2' 
_chem_comp.formula_weight    542.675 
_chem_comp.id                XA4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(20R)-10,15,20-trimethyl-2-[(4-methylpiperazin-1-yl)methyl]-18,19,20,21-tetrahydro-15H,17H-12,8-(metheno)pyrazolo[3',4':2,3][1,5,10,12]oxatriazacycloheptadecino[12,11-a]benzimidazol-7(6H)-one" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N17 C18 XA4 doub 374 n y 
N17 N15 XA4 sing 375 n y 
C18 C06 XA4 sing 376 n y 
C16 N15 XA4 sing 377 n n 
N15 C07 XA4 sing 378 n y 
C06 C07 XA4 doub 379 n y 
C06 C05 XA4 sing 380 n n 
N19 C05 XA4 doub 381 n y 
N19 C20 XA4 sing 382 n y 
C21 C20 XA4 sing 383 n n 
C07 O08 XA4 sing 384 n n 
C05 C04 XA4 sing 385 n y 
C20 C22 XA4 doub 386 n y 
O08 C09 XA4 sing 387 n n 
C04 C03 XA4 doub 388 n y 
C22 C03 XA4 sing 389 n y 
C09 C10 XA4 sing 390 n n 
C03 C02 XA4 sing 391 n n 
C10 C11 XA4 sing 392 n n 
C02 O01 XA4 doub 393 n n 
C02 N23 XA4 sing 394 n n 
C11 C12 XA4 sing 395 n n 
N23 C24 XA4 doub 396 n n 
C12 C14 XA4 sing 397 n n 
C12 C13 XA4 sing 398 n n 
C14 N25 XA4 sing 399 n n 
C24 N25 XA4 sing 400 n n 
C24 N40 XA4 sing 401 n n 
N25 C26 XA4 sing 402 n n 
N40 C39 XA4 sing 403 n n 
C26 C39 XA4 doub 404 n y 
C26 C27 XA4 sing 405 n y 
C39 C38 XA4 sing 406 n y 
C27 C28 XA4 doub 407 n y 
C38 C37 XA4 doub 408 n y 
C28 C37 XA4 sing 409 n y 
C28 C29 XA4 sing 410 n n 
C29 N30 XA4 sing 411 n n 
N30 C36 XA4 sing 412 n n 
N30 C31 XA4 sing 413 n n 
C36 C35 XA4 sing 414 n n 
C31 C32 XA4 sing 415 n n 
C35 N33 XA4 sing 416 n n 
C32 N33 XA4 sing 417 n n 
N33 C34 XA4 sing 418 n n 
C18 H1 XA4 sing 419 n n 
C16 H2 XA4 sing 420 n n 
C16 H3 XA4 sing 421 n n 
C16 H4 XA4 sing 422 n n 
C14 H5 XA4 sing 423 n n 
C14 H6 XA4 sing 424 n n 
C13 H7 XA4 sing 425 n n 
C13 H8 XA4 sing 426 n n 
C13 H9 XA4 sing 427 n n 
C12 H10 XA4 sing 428 n n 
C10 H11 XA4 sing 429 n n 
C10 H12 XA4 sing 430 n n 
C11 H13 XA4 sing 431 n n 
C11 H14 XA4 sing 432 n n 
C21 H15 XA4 sing 433 n n 
C21 H16 XA4 sing 434 n n 
C21 H17 XA4 sing 435 n n 
C22 H18 XA4 sing 436 n n 
C27 H19 XA4 sing 437 n n 
C29 H20 XA4 sing 438 n n 
C29 H21 XA4 sing 439 n n 
C31 H23 XA4 sing 440 n n 
C31 H24 XA4 sing 441 n n 
C04 H25 XA4 sing 442 n n 
C09 H26 XA4 sing 443 n n 
C09 H27 XA4 sing 444 n n 
C32 H28 XA4 sing 445 n n 
C32 H29 XA4 sing 446 n n 
C34 H30 XA4 sing 447 n n 
C34 H31 XA4 sing 448 n n 
C34 H32 XA4 sing 449 n n 
C35 H33 XA4 sing 450 n n 
C35 H34 XA4 sing 451 n n 
C36 H35 XA4 sing 452 n n 
C36 H36 XA4 sing 453 n n 
C37 H37 XA4 sing 454 n n 
C38 H38 XA4 sing 455 n n 
N40 H22 XA4 sing 456 n n 
#
_atom_sites.entry_id                     7KY0 
_atom_sites.fract_transf_matrix[1][1]    0.014241 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002785 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01174 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 XA4 D 1 1101 1076 XA4 BI4 . 
F 2 XA4 A 1 1101 1076 XA4 BI4 . 
G 2 XA4 B 1 1101 1076 XA4 BI4 . 
H 2 XA4 C 1 1101 1076 XA4 BI4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 XA4 . . . H 2 2.881 -9.483 -0.513 1 42.15 ? C18 XA4 1101 C 1 
HETATM 2 C C16 XA4 . . . H 2 1.364 -9.891 2.828 1 51.25 ? C16 XA4 1101 C 1 
HETATM 3 C C14 XA4 . . . H 2 -1.532 -14.839 -1.171 1 39.63 ? C14 XA4 1101 C 1 
HETATM 4 C C13 XA4 . . . H 2 -0.347 -16.471 0.414 1 32.22 ? C13 XA4 1101 C 1 
HETATM 5 C C12 XA4 . . . H 2 -0.54 -15.018 0.03 1 34.89 ? C12 XA4 1101 C 1 
HETATM 6 C C10 XA4 . . . H 2 0.002 -13.878 2.172 1 39.22 ? C10 XA4 1101 C 1 
HETATM 7 C C11 XA4 . . . H 2 -1.078 -14.224 1.187 1 36.72 ? C11 XA4 1101 C 1 
HETATM 8 N N19 XA4 . . . H 2 3.374 -11.131 -2.928 1 46.83 ? N19 XA4 1101 C 1 
HETATM 9 C C20 XA4 . . . H 2 3.58 -11.688 -4.123 1 44.68 ? C20 XA4 1101 C 1 
HETATM 10 C C21 XA4 . . . H 2 4.792 -11.239 -4.943 1 44.04 ? C21 XA4 1101 C 1 
HETATM 11 C C22 XA4 . . . H 2 2.7 -12.662 -4.593 1 43.31 ? C22 XA4 1101 C 1 
HETATM 12 C C24 XA4 . . . H 2 -0.899 -15.848 -3.511 1 35.84 ? C24 XA4 1101 C 1 
HETATM 13 C C26 XA4 . . . H 2 -2.311 -17.138 -2.146 1 38.97 ? C26 XA4 1101 C 1 
HETATM 14 C C27 XA4 . . . H 2 -3.105 -17.742 -1.131 1 43.51 ? C27 XA4 1101 C 1 
HETATM 15 C C28 XA4 . . . H 2 -3.683 -19.027 -1.354 1 44.2 ? C28 XA4 1101 C 1 
HETATM 16 C C29 XA4 . . . H 2 -4.516 -19.684 -0.293 1 42.55 ? C29 XA4 1101 C 1 
HETATM 17 N N30 XA4 . . . H 2 -4.063 -21.086 -0.13 1 44.64 ? N30 XA4 1101 C 1 
HETATM 18 C C31 XA4 . . . H 2 -3.856 -21.434 1.287 1 49.63 ? C31 XA4 1101 C 1 
HETATM 19 C C02 XA4 . . . H 2 0.784 -14.122 -4.51 1 41.04 ? C02 XA4 1101 C 1 
HETATM 20 C C03 XA4 . . . H 2 1.626 -13.119 -3.857 1 40.28 ? C03 XA4 1101 C 1 
HETATM 21 C C04 XA4 . . . H 2 1.384 -12.5 -2.604 1 41.24 ? C04 XA4 1101 C 1 
HETATM 22 C C05 XA4 . . . H 2 2.334 -11.482 -2.135 1 46.98 ? C05 XA4 1101 C 1 
HETATM 23 C C06 XA4 . . . H 2 2.219 -10.772 -0.797 1 46.26 ? C06 XA4 1101 C 1 
HETATM 24 C C07 XA4 . . . H 2 1.615 -11.041 0.439 1 42.23 ? C07 XA4 1101 C 1 
HETATM 25 C C09 XA4 . . . H 2 1.275 -13.218 1.578 1 33.53 ? C09 XA4 1101 C 1 
HETATM 26 C C32 XA4 . . . H 2 -3.887 -22.929 1.668 1 50.05 ? C32 XA4 1101 C 1 
HETATM 27 C C34 XA4 . . . H 2 -3.85 -25.119 0.679 1 52.84 ? C34 XA4 1101 C 1 
HETATM 28 C C35 XA4 . . . H 2 -4.954 -23.427 -0.531 1 50.78 ? C35 XA4 1101 C 1 
HETATM 29 C C36 XA4 . . . H 2 -5.155 -21.939 -0.736 1 50.94 ? C36 XA4 1101 C 1 
HETATM 30 C C37 XA4 . . . H 2 -3.448 -19.668 -2.579 1 44.26 ? C37 XA4 1101 C 1 
HETATM 31 C C38 XA4 . . . H 2 -2.659 -19.096 -3.593 1 42.11 ? C38 XA4 1101 C 1 
HETATM 32 C C39 XA4 . . . H 2 -2.095 -17.821 -3.342 1 39.51 ? C39 XA4 1101 C 1 
HETATM 33 N N15 XA4 . . . H 2 1.836 -10.034 1.359 1 46.34 ? N15 XA4 1101 C 1 
HETATM 34 N N17 XA4 . . . H 2 2.633 -9.066 0.766 1 42.78 ? N17 XA4 1101 C 1 
HETATM 35 N N23 XA4 . . . H 2 -0.192 -15.133 -4.342 1 35.66 ? N23 XA4 1101 C 1 
HETATM 36 N N25 XA4 . . . H 2 -1.633 -15.875 -2.213 1 36.43 ? N25 XA4 1101 C 1 
HETATM 37 N N33 XA4 . . . H 2 -3.812 -23.714 0.357 1 57.18 ? N33 XA4 1101 C 1 
HETATM 38 N N40 XA4 . . . H 2 -1.308 -17.073 -4.125 1 37.25 ? N40 XA4 1101 C 1 
HETATM 39 O O01 XA4 . . . H 2 0.993 -14.077 -5.759 1 49.29 ? O01 XA4 1101 C 1 
HETATM 40 O O08 XA4 . . . H 2 0.858 -12.222 0.649 1 32.91 ? O08 XA4 1101 C 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           40 
#