data_7KY8 # _model_server_result.job_id sDbaEHJj3mgZTPF9OPRXFA _model_server_result.datetime_utc '2024-12-26 14:06:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ky8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1704}' # _entry.id 7KY8 # _exptl.entry_id 7KY8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KY8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 3 MAN MAN C3 H3 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 1001 NAG 3 n C NAG 2 C 2 NAG B 1009 NAG 4 n D NAG 1 D 1 NAG B 1002 NAG 4 n D NAG 2 D 2 NAG B 1003 NAG 4 n D MAN 3 D 3 MAN B 1010 MAN 4 n D MAN 4 D 4 MAN B 1011 MAN 3 n E NAG 1 E 1 NAG B 1005 NAG 3 n E NAG 2 E 2 NAG B 1006 NAG 3 n F NAG 1 F 1 NAG B 1007 NAG 3 n F NAG 2 F 2 NAG B 1008 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 110 B CYS 110 1_555 B SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 216 B CYS 216 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B ND2 ASN 113 B ASN 113 1_555 O C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 240 B ASN 240 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 B ND2 ASN 256 B ASN 256 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 B ND2 ASN 298 B ASN 298 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 B ND2 ASN 332 B ASN 332 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale8 D O4 NAG . D NAG 2 1_555 D C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 D O3 MAN . D MAN 3 1_555 D C3 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OG1 THR 714 A THR 714 1_555 K MG MG . A MG 1705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc2 A O ASP 1173 A ASP 1173 1_555 K MG MG . A MG 1705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 121 n n C1 C10 CLR sing 122 n n C1 H11 CLR sing 123 n n C1 H12 CLR sing 124 n n C2 C3 CLR sing 125 n n C2 H21 CLR sing 126 n n C2 H22 CLR sing 127 n n C3 C4 CLR sing 128 n n C3 O1 CLR sing 129 n n C3 H3 CLR sing 130 n n C4 C5 CLR sing 131 n n C4 H41 CLR sing 132 n n C4 H42 CLR sing 133 n n C5 C6 CLR doub 134 n n C5 C10 CLR sing 135 n n C6 C7 CLR sing 136 n n C6 H6 CLR sing 137 n n C7 C8 CLR sing 138 n n C7 H71 CLR sing 139 n n C7 H72 CLR sing 140 n n C8 C9 CLR sing 141 n n C8 C14 CLR sing 142 n n C8 H8 CLR sing 143 n n C9 C10 CLR sing 144 n n C9 C11 CLR sing 145 n n C9 H9 CLR sing 146 n n C10 C19 CLR sing 147 n n C11 C12 CLR sing 148 n n C11 H111 CLR sing 149 n n C11 H112 CLR sing 150 n n C12 C13 CLR sing 151 n n C12 H121 CLR sing 152 n n C12 H122 CLR sing 153 n n C13 C14 CLR sing 154 n n C13 C17 CLR sing 155 n n C13 C18 CLR sing 156 n n C14 C15 CLR sing 157 n n C14 H14 CLR sing 158 n n C15 C16 CLR sing 159 n n C15 H151 CLR sing 160 n n C15 H152 CLR sing 161 n n C16 C17 CLR sing 162 n n C16 H161 CLR sing 163 n n C16 H162 CLR sing 164 n n C17 C20 CLR sing 165 n n C17 H17 CLR sing 166 n n C18 H181 CLR sing 167 n n C18 H182 CLR sing 168 n n C18 H183 CLR sing 169 n n C19 H191 CLR sing 170 n n C19 H192 CLR sing 171 n n C19 H193 CLR sing 172 n n C20 C21 CLR sing 173 n n C20 C22 CLR sing 174 n n C20 H20 CLR sing 175 n n C21 H211 CLR sing 176 n n C21 H212 CLR sing 177 n n C21 H213 CLR sing 178 n n C22 C23 CLR sing 179 n n C22 H221 CLR sing 180 n n C22 H222 CLR sing 181 n n C23 C24 CLR sing 182 n n C23 H231 CLR sing 183 n n C23 H232 CLR sing 184 n n C24 C25 CLR sing 185 n n C24 H241 CLR sing 186 n n C24 H242 CLR sing 187 n n C25 C26 CLR sing 188 n n C25 C27 CLR sing 189 n n C25 H25 CLR sing 190 n n C26 H261 CLR sing 191 n n C26 H262 CLR sing 192 n n C26 H263 CLR sing 193 n n C27 H271 CLR sing 194 n n C27 H272 CLR sing 195 n n C27 H273 CLR sing 196 n n O1 H1 CLR sing 197 n n # _atom_sites.entry_id 7KY8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 CLR A 1 1701 2007 CLR CLR . H 5 CLR A 1 1702 2008 CLR CLR . I 5 CLR A 1 1703 2009 CLR CLR . J 5 CLR A 1 1704 2011 CLR CLR . K 6 MG A 1 1705 2012 MG MG . L 7 ACP A 1 1706 2013 ACP ACP . M 8 MAN A 1 1707 1012 MAN MAN . N 5 CLR B 1 501 2005 CLR CLR . O 9 NAG B 1 502 1004 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . J 5 97.617 123.255 116.154 1 47.28 ? C1 CLR 1704 A 1 HETATM 2 C C2 CLR . . . J 5 98.167 122.007 116.84 1 47.28 ? C2 CLR 1704 A 1 HETATM 3 C C3 CLR . . . J 5 97.418 120.764 116.321 1 47.28 ? C3 CLR 1704 A 1 HETATM 4 C C4 CLR . . . J 5 97.611 120.655 114.797 1 47.28 ? C4 CLR 1704 A 1 HETATM 5 C C5 CLR . . . J 5 97.227 121.932 114.126 1 47.28 ? C5 CLR 1704 A 1 HETATM 6 C C6 CLR . . . J 5 96.498 121.871 113.026 1 47.28 ? C6 CLR 1704 A 1 HETATM 7 C C7 CLR . . . J 5 96.205 123.056 112.188 1 47.28 ? C7 CLR 1704 A 1 HETATM 8 C C8 CLR . . . J 5 97.268 124.117 112.442 1 47.28 ? C8 CLR 1704 A 1 HETATM 9 C C9 CLR . . . J 5 97.365 124.428 113.946 1 47.28 ? C9 CLR 1704 A 1 HETATM 10 C C10 CLR . . . J 5 97.895 123.17 114.653 1 47.28 ? C10 CLR 1704 A 1 HETATM 11 C C11 CLR . . . J 5 98.297 125.626 114.24 1 47.28 ? C11 CLR 1704 A 1 HETATM 12 C C12 CLR . . . J 5 98.09 126.837 113.322 1 47.28 ? C12 CLR 1704 A 1 HETATM 13 C C13 CLR . . . J 5 98.107 126.387 111.861 1 47.28 ? C13 CLR 1704 A 1 HETATM 14 C C14 CLR . . . J 5 96.94 125.392 111.692 1 47.28 ? C14 CLR 1704 A 1 HETATM 15 C C15 CLR . . . J 5 96.791 125.295 110.185 1 47.28 ? C15 CLR 1704 A 1 HETATM 16 C C16 CLR . . . J 5 96.934 126.753 109.743 1 47.28 ? C16 CLR 1704 A 1 HETATM 17 C C17 CLR . . . J 5 97.792 127.475 110.815 1 47.28 ? C17 CLR 1704 A 1 HETATM 18 C C18 CLR . . . J 5 99.435 125.708 111.497 1 47.28 ? C18 CLR 1704 A 1 HETATM 19 C C19 CLR . . . J 5 99.396 123.046 114.417 1 47.28 ? C19 CLR 1704 A 1 HETATM 20 C C20 CLR . . . J 5 99.076 128.111 110.233 1 47.28 ? C20 CLR 1704 A 1 HETATM 21 C C21 CLR . . . J 5 99.239 129.541 110.749 1 47.28 ? C21 CLR 1704 A 1 HETATM 22 C C22 CLR . . . J 5 99.113 128.043 108.693 1 47.28 ? C22 CLR 1704 A 1 HETATM 23 C C23 CLR . . . J 5 98.762 129.398 108.09 1 47.28 ? C23 CLR 1704 A 1 HETATM 24 C C24 CLR . . . J 5 98.154 129.218 106.712 1 47.28 ? C24 CLR 1704 A 1 HETATM 25 C C25 CLR . . . J 5 99.207 128.706 105.739 1 47.28 ? C25 CLR 1704 A 1 HETATM 26 C C26 CLR . . . J 5 98.577 128.547 104.368 1 47.28 ? C26 CLR 1704 A 1 HETATM 27 C C27 CLR . . . J 5 100.372 129.682 105.674 1 47.28 ? C27 CLR 1704 A 1 HETATM 28 O O1 CLR . . . J 5 97.98 119.657 116.95 1 47.28 ? O1 CLR 1704 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #