data_7KYB # _model_server_result.job_id eg9G2dy0adqtg8Gn8tjaXA _model_server_result.datetime_utc '2024-12-26 19:34:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1601}' # _entry.id 7KYB # _exptl.entry_id 7KYB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KYB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 1002 NAG 3 n C NAG 2 C 2 NAG B 1003 NAG 3 n C MAN 3 C 3 MAN B 1004 MAN 4 n D NAG 1 D 1 NAG B 1006 NAG 4 n D NAG 2 D 2 NAG B 1007 NAG 4 n E NAG 1 E 1 NAG B 1008 NAG 4 n E NAG 2 E 2 NAG B 1009 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 110 B CYS 110 1_555 B SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 216 B CYS 216 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 B ND2 ASN 113 B ASN 113 1_555 L C1 NAG . B NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 B ND2 ASN 240 B ASN 240 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale3 B ND2 ASN 256 B ASN 256 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale4 B ND2 ASN 298 B ASN 298 1_555 K C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 B ND2 ASN 332 B ASN 332 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A O GLN 797 A GLN 797 1_555 J MG MG . A MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc2 A OE1 GLU 1151 A GLU 1151 1_555 J MG MG . A MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc3 G O3B ADP . A ADP 1602 1_555 I MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc4 G O2A ADP . A ADP 1602 1_555 I MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 360 n n N C13 POV sing 361 n n N C14 POV sing 362 n n N C15 POV sing 363 n n P O11 POV sing 364 n n P O12 POV sing 365 n n P O13 POV sing 366 n n P O14 POV doub 367 n n C1 C2 POV sing 368 n n C1 O11 POV sing 369 n n C1 H1 POV sing 370 n n C1 H1A POV sing 371 n n C2 C3 POV sing 372 n n C2 O21 POV sing 373 n n C2 H2 POV sing 374 n n C3 O31 POV sing 375 n n C3 H3 POV sing 376 n n C3 H3A POV sing 377 n n C210 C211 POV sing 378 n n C210 C29 POV doub 379 z n C210 H210 POV sing 380 n n C310 C311 POV sing 381 n n C310 C39 POV sing 382 n n C310 H310 POV sing 383 n n C310 H31A POV sing 384 n n C11 C12 POV sing 385 n n C11 O12 POV sing 386 n n C11 H11 POV sing 387 n n C11 H11A POV sing 388 n n C211 C212 POV sing 389 n n C211 H211 POV sing 390 n n C211 H21A POV sing 391 n n C311 C312 POV sing 392 n n C311 H311 POV sing 393 n n C311 H31B POV sing 394 n n C12 H12 POV sing 395 n n C12 H12A POV sing 396 n n C212 C213 POV sing 397 n n C212 H212 POV sing 398 n n C212 H21B POV sing 399 n n C312 C313 POV sing 400 n n C312 H312 POV sing 401 n n C312 H31C POV sing 402 n n C13 H13 POV sing 403 n n C13 H13A POV sing 404 n n C13 H13B POV sing 405 n n C213 C214 POV sing 406 n n C213 H213 POV sing 407 n n C213 H21C POV sing 408 n n C313 C314 POV sing 409 n n C313 H313 POV sing 410 n n C313 H31D POV sing 411 n n C14 H14 POV sing 412 n n C14 H14A POV sing 413 n n C14 H14B POV sing 414 n n C214 C215 POV sing 415 n n C214 H214 POV sing 416 n n C214 H21D POV sing 417 n n C314 C315 POV sing 418 n n C314 H314 POV sing 419 n n C314 H31E POV sing 420 n n C15 H15 POV sing 421 n n C15 H15A POV sing 422 n n C15 H15B POV sing 423 n n C215 C216 POV sing 424 n n C215 H215 POV sing 425 n n C215 H21E POV sing 426 n n C315 C316 POV sing 427 n n C315 H315 POV sing 428 n n C315 H31F POV sing 429 n n C216 C217 POV sing 430 n n C216 H216 POV sing 431 n n C216 H21F POV sing 432 n n C316 H316 POV sing 433 n n C316 H31G POV sing 434 n n C316 H31H POV sing 435 n n C217 C218 POV sing 436 n n C217 H217 POV sing 437 n n C217 H21G POV sing 438 n n C218 H218 POV sing 439 n n C218 H21H POV sing 440 n n C218 H21J POV sing 441 n n C21 O21 POV sing 442 n n C21 C22 POV sing 443 n n C21 O22 POV doub 444 n n C22 C23 POV sing 445 n n C22 H22 POV sing 446 n n C22 H22A POV sing 447 n n C23 C24 POV sing 448 n n C23 H23 POV sing 449 n n C23 H23A POV sing 450 n n C24 C25 POV sing 451 n n C24 H24 POV sing 452 n n C24 H24A POV sing 453 n n C25 C26 POV sing 454 n n C25 H25 POV sing 455 n n C25 H25A POV sing 456 n n C26 C27 POV sing 457 n n C26 H26 POV sing 458 n n C26 H26A POV sing 459 n n C27 C28 POV sing 460 n n C27 H27 POV sing 461 n n C27 H27A POV sing 462 n n C28 C29 POV sing 463 n n C28 H28 POV sing 464 n n C28 H28A POV sing 465 n n C29 H29 POV sing 466 n n C31 O31 POV sing 467 n n C31 C32 POV sing 468 n n C31 O32 POV doub 469 n n C32 C33 POV sing 470 n n C32 H32 POV sing 471 n n C32 H32A POV sing 472 n n C33 C34 POV sing 473 n n C33 H33 POV sing 474 n n C33 H33A POV sing 475 n n C34 C35 POV sing 476 n n C34 H34 POV sing 477 n n C34 H34A POV sing 478 n n C35 C36 POV sing 479 n n C35 H35 POV sing 480 n n C35 H35A POV sing 481 n n C36 C37 POV sing 482 n n C36 H36 POV sing 483 n n C36 H36A POV sing 484 n n C37 C38 POV sing 485 n n C37 H37 POV sing 486 n n C37 H37A POV sing 487 n n C38 C39 POV sing 488 n n C38 H38 POV sing 489 n n C38 H38A POV sing 490 n n C39 H39 POV sing 491 n n C39 H39A POV sing 492 n n # _atom_sites.entry_id 7KYB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 POV A 1 1601 2010 POV POV . G 6 ADP A 1 1602 2201 ADP ADP . H 7 ALF A 1 1603 2202 ALF ALF . I 8 MG A 1 1604 2203 MG MG . J 8 MG A 1 1605 2204 MG MG . K 9 NAG B 1 1001 1001 NAG NAG . L 9 NAG B 1 1002 1005 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . F 5 129.458 158.757 132.124 1 58.83 ? N POV 1601 A 1 HETATM 2 P P POV . . . F 5 127.218 154.474 130.679 1 58.83 ? P POV 1601 A 1 HETATM 3 C C1 POV . . . F 5 127.845 151.961 131.23 1 58.83 ? C1 POV 1601 A 1 HETATM 4 C C2 POV . . . F 5 128.629 150.756 130.714 1 58.83 ? C2 POV 1601 A 1 HETATM 5 C C3 POV . . . F 5 129.965 151.23 130.135 1 58.83 ? C3 POV 1601 A 1 HETATM 6 C C210 POV . . . F 5 124.634 142.55 121.176 1 58.83 ? C210 POV 1601 A 1 HETATM 7 C C310 POV . . . F 5 128.983 144.549 122.347 1 58.83 ? C310 POV 1601 A 1 HETATM 8 C C11 POV . . . F 5 128.309 156.882 130.986 1 58.83 ? C11 POV 1601 A 1 HETATM 9 O O11 POV . . . F 5 128.004 153.044 130.342 1 58.83 ? O11 POV 1601 A 1 HETATM 10 C C211 POV . . . F 5 124.965 141.542 120.044 1 58.83 ? C211 POV 1601 A 1 HETATM 11 C C311 POV . . . F 5 129.71 144.358 120.986 1 58.83 ? C311 POV 1601 A 1 HETATM 12 C C12 POV . . . F 5 128.36 157.796 132.242 1 58.83 ? C12 POV 1601 A 1 HETATM 13 O O12 POV . . . F 5 128.304 155.52 131.391 1 58.83 ? O12 POV 1601 A 1 HETATM 14 C C212 POV . . . F 5 124.741 142.199 118.669 1 58.83 ? C212 POV 1601 A 1 HETATM 15 C C312 POV . . . F 5 130.395 145.677 120.551 1 58.83 ? C312 POV 1601 A 1 HETATM 16 C C13 POV . . . F 5 129.371 159.468 130.881 1 58.83 ? C13 POV 1601 A 1 HETATM 17 O O13 POV . . . F 5 126.083 154.197 131.632 1 58.83 ? O13 POV 1601 A 1 HETATM 18 C C213 POV . . . F 5 123.751 141.328 117.86 1 58.83 ? C213 POV 1601 A 1 HETATM 19 C C313 POV . . . F 5 129.833 146.137 119.181 1 58.83 ? C313 POV 1601 A 1 HETATM 20 C C14 POV . . . F 5 130.707 158.067 132.184 1 58.83 ? C14 POV 1601 A 1 HETATM 21 O O14 POV . . . F 5 126.668 155.087 129.415 1 58.83 ? O14 POV 1601 A 1 HETATM 22 C C214 POV . . . F 5 122.683 142.204 117.157 1 58.83 ? C214 POV 1601 A 1 HETATM 23 C C314 POV . . . F 5 130.126 145.077 118.093 1 58.83 ? C314 POV 1601 A 1 HETATM 24 C C15 POV . . . F 5 129.373 159.704 133.215 1 58.83 ? C15 POV 1601 A 1 HETATM 25 C C215 POV . . . F 5 121.759 142.891 118.182 1 58.83 ? C215 POV 1601 A 1 HETATM 26 C C315 POV . . . F 5 129.233 145.309 116.857 1 58.83 ? C315 POV 1601 A 1 HETATM 27 C C216 POV . . . F 5 120.358 142.275 118.128 1 58.83 ? C216 POV 1601 A 1 HETATM 28 C C316 POV . . . F 5 127.772 145.034 117.219 1 58.83 ? C316 POV 1601 A 1 HETATM 29 C C217 POV . . . F 5 119.41 143.068 119.029 1 58.83 ? C217 POV 1601 A 1 HETATM 30 C C218 POV . . . F 5 120.013 143.257 120.426 1 58.83 ? C218 POV 1601 A 1 HETATM 31 C C21 POV . . . F 5 127.685 148.724 129.942 1 58.83 ? C21 POV 1601 A 1 HETATM 32 O O21 POV . . . F 5 127.89 150.111 129.717 1 58.83 ? O21 POV 1601 A 1 HETATM 33 C C22 POV . . . F 5 126.604 147.946 129.146 1 58.83 ? C22 POV 1601 A 1 HETATM 34 O O22 POV . . . F 5 128.344 148.161 130.745 1 58.83 ? O22 POV 1601 A 1 HETATM 35 C C23 POV . . . F 5 127.256 147.192 127.962 1 58.83 ? C23 POV 1601 A 1 HETATM 36 C C24 POV . . . F 5 126.254 146.135 127.438 1 58.83 ? C24 POV 1601 A 1 HETATM 37 C C25 POV . . . F 5 126.921 145.27 126.343 1 58.83 ? C25 POV 1601 A 1 HETATM 38 C C26 POV . . . F 5 125.938 145.121 125.162 1 58.83 ? C26 POV 1601 A 1 HETATM 39 C C27 POV . . . F 5 126.103 143.759 124.456 1 58.83 ? C27 POV 1601 A 1 HETATM 40 C C28 POV . . . F 5 125.023 143.654 123.367 1 58.83 ? C28 POV 1601 A 1 HETATM 41 C C29 POV . . . F 5 125.406 142.637 122.268 1 58.83 ? C29 POV 1601 A 1 HETATM 42 C C31 POV . . . F 5 130.888 151.268 127.934 1 58.83 ? C31 POV 1601 A 1 HETATM 43 O O31 POV . . . F 5 129.774 151.549 128.771 1 58.83 ? O31 POV 1601 A 1 HETATM 44 C C32 POV . . . F 5 130.661 150.99 126.424 1 58.83 ? C32 POV 1601 A 1 HETATM 45 O O32 POV . . . F 5 131.976 151.253 128.377 1 58.83 ? O32 POV 1601 A 1 HETATM 46 C C33 POV . . . F 5 131.995 150.541 125.789 1 58.83 ? C33 POV 1601 A 1 HETATM 47 C C34 POV . . . F 5 131.731 150.147 124.312 1 58.83 ? C34 POV 1601 A 1 HETATM 48 C C35 POV . . . F 5 132.29 148.731 124.052 1 58.83 ? C35 POV 1601 A 1 HETATM 49 C C36 POV . . . F 5 131.158 147.872 123.435 1 58.83 ? C36 POV 1601 A 1 HETATM 50 C C37 POV . . . F 5 130.022 147.652 124.478 1 58.83 ? C37 POV 1601 A 1 HETATM 51 C C38 POV . . . F 5 129.053 146.559 123.942 1 58.83 ? C38 POV 1601 A 1 HETATM 52 C C39 POV . . . F 5 129.875 145.4 123.299 1 58.83 ? C39 POV 1601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 52 #