data_7KYC # _model_server_result.job_id RYIqNUBkM7IGkiQj66AM5A _model_server_result.datetime_utc '2024-12-26 11:32:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1604}' # _entry.id 7KYC # _exptl.entry_id 7KYC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N ? 7 J N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 1002 NAG 3 n C NAG 2 C 2 NAG B 1003 NAG 3 n C MAN 3 C 3 MAN B 1004 MAN 4 n D NAG 1 D 1 NAG B 1006 NAG 4 n D NAG 2 D 2 NAG B 1007 NAG 4 n E NAG 1 E 1 NAG B 1008 NAG 4 n E NAG 2 E 2 NAG B 1009 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 110 B CYS 110 1_555 B SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 B SG CYS 216 B CYS 216 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 B ND2 ASN 113 B ASN 113 1_555 L C1 NAG . B NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 240 B ASN 240 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale3 B ND2 ASN 256 B ASN 256 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 B ND2 ASN 298 B ASN 298 1_555 K C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale5 B ND2 ASN 332 B ASN 332 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? metalc ? metalc1 A OD2 ASP 667 A ASP 667 1_555 F BE BEF . A BEF 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? metalc ? metalc2 A OD1 ASP 667 A ASP 667 1_555 G MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 A O THR 669 A THR 669 1_555 G MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc4 A O ASP 1130 A ASP 1130 1_555 G MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc5 A OD1 ASP 1130 A ASP 1130 1_555 G MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 315 n n N C13 POV sing 316 n n N C14 POV sing 317 n n N C15 POV sing 318 n n P O11 POV sing 319 n n P O12 POV sing 320 n n P O13 POV sing 321 n n P O14 POV doub 322 n n C1 C2 POV sing 323 n n C1 O11 POV sing 324 n n C1 H1 POV sing 325 n n C1 H1A POV sing 326 n n C2 C3 POV sing 327 n n C2 O21 POV sing 328 n n C2 H2 POV sing 329 n n C3 O31 POV sing 330 n n C3 H3 POV sing 331 n n C3 H3A POV sing 332 n n C210 C211 POV sing 333 n n C210 C29 POV doub 334 z n C210 H210 POV sing 335 n n C310 C311 POV sing 336 n n C310 C39 POV sing 337 n n C310 H310 POV sing 338 n n C310 H31A POV sing 339 n n C11 C12 POV sing 340 n n C11 O12 POV sing 341 n n C11 H11 POV sing 342 n n C11 H11A POV sing 343 n n C211 C212 POV sing 344 n n C211 H211 POV sing 345 n n C211 H21A POV sing 346 n n C311 C312 POV sing 347 n n C311 H311 POV sing 348 n n C311 H31B POV sing 349 n n C12 H12 POV sing 350 n n C12 H12A POV sing 351 n n C212 C213 POV sing 352 n n C212 H212 POV sing 353 n n C212 H21B POV sing 354 n n C312 C313 POV sing 355 n n C312 H312 POV sing 356 n n C312 H31C POV sing 357 n n C13 H13 POV sing 358 n n C13 H13A POV sing 359 n n C13 H13B POV sing 360 n n C213 C214 POV sing 361 n n C213 H213 POV sing 362 n n C213 H21C POV sing 363 n n C313 C314 POV sing 364 n n C313 H313 POV sing 365 n n C313 H31D POV sing 366 n n C14 H14 POV sing 367 n n C14 H14A POV sing 368 n n C14 H14B POV sing 369 n n C214 C215 POV sing 370 n n C214 H214 POV sing 371 n n C214 H21D POV sing 372 n n C314 C315 POV sing 373 n n C314 H314 POV sing 374 n n C314 H31E POV sing 375 n n C15 H15 POV sing 376 n n C15 H15A POV sing 377 n n C15 H15B POV sing 378 n n C215 C216 POV sing 379 n n C215 H215 POV sing 380 n n C215 H21E POV sing 381 n n C315 C316 POV sing 382 n n C315 H315 POV sing 383 n n C315 H31F POV sing 384 n n C216 C217 POV sing 385 n n C216 H216 POV sing 386 n n C216 H21F POV sing 387 n n C316 H316 POV sing 388 n n C316 H31G POV sing 389 n n C316 H31H POV sing 390 n n C217 C218 POV sing 391 n n C217 H217 POV sing 392 n n C217 H21G POV sing 393 n n C218 H218 POV sing 394 n n C218 H21H POV sing 395 n n C218 H21J POV sing 396 n n C21 O21 POV sing 397 n n C21 C22 POV sing 398 n n C21 O22 POV doub 399 n n C22 C23 POV sing 400 n n C22 H22 POV sing 401 n n C22 H22A POV sing 402 n n C23 C24 POV sing 403 n n C23 H23 POV sing 404 n n C23 H23A POV sing 405 n n C24 C25 POV sing 406 n n C24 H24 POV sing 407 n n C24 H24A POV sing 408 n n C25 C26 POV sing 409 n n C25 H25 POV sing 410 n n C25 H25A POV sing 411 n n C26 C27 POV sing 412 n n C26 H26 POV sing 413 n n C26 H26A POV sing 414 n n C27 C28 POV sing 415 n n C27 H27 POV sing 416 n n C27 H27A POV sing 417 n n C28 C29 POV sing 418 n n C28 H28 POV sing 419 n n C28 H28A POV sing 420 n n C29 H29 POV sing 421 n n C31 O31 POV sing 422 n n C31 C32 POV sing 423 n n C31 O32 POV doub 424 n n C32 C33 POV sing 425 n n C32 H32 POV sing 426 n n C32 H32A POV sing 427 n n C33 C34 POV sing 428 n n C33 H33 POV sing 429 n n C33 H33A POV sing 430 n n C34 C35 POV sing 431 n n C34 H34 POV sing 432 n n C34 H34A POV sing 433 n n C35 C36 POV sing 434 n n C35 H35 POV sing 435 n n C35 H35A POV sing 436 n n C36 C37 POV sing 437 n n C36 H36 POV sing 438 n n C36 H36A POV sing 439 n n C37 C38 POV sing 440 n n C37 H37 POV sing 441 n n C37 H37A POV sing 442 n n C38 C39 POV sing 443 n n C38 H38 POV sing 444 n n C38 H38A POV sing 445 n n C39 H39 POV sing 446 n n C39 H39A POV sing 447 n n # _atom_sites.entry_id 7KYC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 BEF A 1 1601 1999 BEF BEF . G 6 MG A 1 1602 2000 MG MG . H 7 POV A 1 1603 3001 POV POV . I 7 POV A 1 1604 3002 POV POV . J 7 POV A 1 1605 3003 POV POV . K 8 NAG B 1 1001 1001 NAG NAG . L 8 NAG B 1 1002 1005 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . I 7 129.882 156.335 128.727 1 30 ? N POV 1604 A 1 HETATM 2 P P POV . . . I 7 127.576 152.094 128.806 1 30 ? P POV 1604 A 1 HETATM 3 C C1 POV . . . I 7 128.29 149.685 127.969 1 30 ? C1 POV 1604 A 1 HETATM 4 C C2 POV . . . I 7 127.849 148.55 127.045 1 30 ? C2 POV 1604 A 1 HETATM 5 C C3 POV . . . I 7 128.194 148.909 125.593 1 30 ? C3 POV 1604 A 1 HETATM 6 C C210 POV . . . I 7 123.399 140.395 119.275 1 30 ? C210 POV 1604 A 1 HETATM 7 C C310 POV . . . I 7 127.769 142.449 118.803 1 30 ? C310 POV 1604 A 1 HETATM 8 C C11 POV . . . I 7 128.026 154.711 128.653 1 30 ? C11 POV 1604 A 1 HETATM 9 O O11 POV . . . I 7 127.5 150.829 127.722 1 30 ? O11 POV 1604 A 1 HETATM 10 C C211 POV . . . I 7 122.979 138.987 118.776 1 30 ? C211 POV 1604 A 1 HETATM 11 C C311 POV . . . I 7 129.184 141.995 118.335 1 30 ? C311 POV 1604 A 1 HETATM 12 C C12 POV . . . I 7 129.212 155.349 127.875 1 30 ? C12 POV 1604 A 1 HETATM 13 O O12 POV . . . I 7 127.589 153.54 127.973 1 30 ? O12 POV 1604 A 1 HETATM 14 C C212 POV . . . I 7 123.104 138.929 117.239 1 30 ? C212 POV 1604 A 1 HETATM 15 C C312 POV . . . I 7 129.695 142.953 117.228 1 30 ? C312 POV 1604 A 1 HETATM 16 C C13 POV . . . I 7 130.614 157.259 127.907 1 30 ? C13 POV 1604 A 1 HETATM 17 O O13 POV . . . I 7 128.838 151.976 129.63 1 30 ? O13 POV 1604 A 1 HETATM 18 C C213 POV . . . I 7 122.041 139.857 116.599 1 30 ? C213 POV 1604 A 1 HETATM 19 C C313 POV . . . I 7 130.204 142.125 116.024 1 30 ? C313 POV 1604 A 1 HETATM 20 C C14 POV . . . I 7 130.785 155.666 129.611 1 30 ? C14 POV 1604 A 1 HETATM 21 O O14 POV . . . I 7 126.375 152.048 129.716 1 30 ? O14 POV 1604 A 1 HETATM 22 C C214 POV . . . I 7 120.632 139.422 117.058 1 30 ? C214 POV 1604 A 1 HETATM 23 C C314 POV . . . I 7 131.362 141.211 116.48 1 30 ? C314 POV 1604 A 1 HETATM 24 C C15 POV . . . I 7 128.891 157.056 129.503 1 30 ? C15 POV 1604 A 1 HETATM 25 C C215 POV . . . I 7 119.768 140.671 117.312 1 30 ? C215 POV 1604 A 1 HETATM 26 C C315 POV . . . I 7 132.166 140.747 115.248 1 30 ? C315 POV 1604 A 1 HETATM 27 C C216 POV . . . I 7 118.892 140.442 118.548 1 30 ? C216 POV 1604 A 1 HETATM 28 C C316 POV . . . I 7 133.263 139.776 115.691 1 30 ? C316 POV 1604 A 1 HETATM 29 C C217 POV . . . I 7 118.339 141.782 119.037 1 30 ? C217 POV 1604 A 1 HETATM 30 C C218 POV . . . I 7 119.466 142.589 119.694 1 30 ? C218 POV 1604 A 1 HETATM 31 C C21 POV . . . I 7 126.079 147.006 127.309 1 30 ? C21 POV 1604 A 1 HETATM 32 O O21 POV . . . I 7 126.467 148.364 127.163 1 30 ? O21 POV 1604 A 1 HETATM 33 C C22 POV . . . I 7 125.325 146.286 126.157 1 30 ? C22 POV 1604 A 1 HETATM 34 O O22 POV . . . I 7 126.331 146.421 128.311 1 30 ? O22 POV 1604 A 1 HETATM 35 C C23 POV . . . I 7 126.178 145.097 125.641 1 30 ? C23 POV 1604 A 1 HETATM 36 C C24 POV . . . I 7 125.857 144.839 124.146 1 30 ? C24 POV 1604 A 1 HETATM 37 C C25 POV . . . I 7 124.565 143.995 124.033 1 30 ? C25 POV 1604 A 1 HETATM 38 C C26 POV . . . I 7 124.865 142.691 123.26 1 30 ? C26 POV 1604 A 1 HETATM 39 C C27 POV . . . I 7 123.57 142.174 122.6 1 30 ? C27 POV 1604 A 1 HETATM 40 C C28 POV . . . I 7 123.768 142.089 121.077 1 30 ? C28 POV 1604 A 1 HETATM 41 C C29 POV . . . I 7 123.35 140.685 120.581 1 30 ? C29 POV 1604 A 1 HETATM 42 C C31 POV . . . I 7 129.461 150.576 124.448 1 30 ? C31 POV 1604 A 1 HETATM 43 O O31 POV . . . I 7 129.38 149.691 125.565 1 30 ? O31 POV 1604 A 1 HETATM 44 C C32 POV . . . I 7 128.619 150.294 123.167 1 30 ? C32 POV 1604 A 1 HETATM 45 O O32 POV . . . I 7 130.165 151.523 124.495 1 30 ? O32 POV 1604 A 1 HETATM 46 C C33 POV . . . I 7 128.93 148.868 122.648 1 30 ? C33 POV 1604 A 1 HETATM 47 C C34 POV . . . I 7 127.65 147.992 122.747 1 30 ? C34 POV 1604 A 1 HETATM 48 C C35 POV . . . I 7 127.67 146.916 121.632 1 30 ? C35 POV 1604 A 1 HETATM 49 C C36 POV . . . I 7 129.094 146.3 121.533 1 30 ? C36 POV 1604 A 1 HETATM 50 C C37 POV . . . I 7 128.985 144.748 121.465 1 30 ? C37 POV 1604 A 1 HETATM 51 C C38 POV . . . I 7 127.828 144.349 120.503 1 30 ? C38 POV 1604 A 1 HETATM 52 C C39 POV . . . I 7 127.811 142.8 120.325 1 30 ? C39 POV 1604 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 52 #