data_7KYE # _model_server_result.job_id mOMyMdY8DJAYjYrs5-Qfmg _model_server_result.datetime_utc '2024-11-05 06:44:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7KYE # _exptl.entry_id 7KYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KYE _cell.length_a 43.208 _cell.length_b 44.075 _cell.length_c 97.313 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 7KYE _atom_sites.fract_transf_matrix[1][1] 0.023144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 201 1 COA COA . C 3 NHE A 1 202 1 NHE NHE . D 4 EDO A 1 203 1 EDO EDO . E 4 EDO A 1 204 2 EDO EDO . F 5 HOH A 1 301 160 HOH HOH . F 5 HOH A 2 302 250 HOH HOH . F 5 HOH A 3 303 131 HOH HOH . F 5 HOH A 4 304 90 HOH HOH . F 5 HOH A 5 305 212 HOH HOH . F 5 HOH A 6 306 31 HOH HOH . F 5 HOH A 7 307 18 HOH HOH . F 5 HOH A 8 308 117 HOH HOH . F 5 HOH A 9 309 35 HOH HOH . F 5 HOH A 10 310 243 HOH HOH . F 5 HOH A 11 311 33 HOH HOH . F 5 HOH A 12 312 32 HOH HOH . F 5 HOH A 13 313 9 HOH HOH . F 5 HOH A 14 314 215 HOH HOH . F 5 HOH A 15 315 42 HOH HOH . F 5 HOH A 16 316 13 HOH HOH . F 5 HOH A 17 317 8 HOH HOH . F 5 HOH A 18 318 203 HOH HOH . F 5 HOH A 19 319 1 HOH HOH . F 5 HOH A 20 320 248 HOH HOH . F 5 HOH A 21 321 62 HOH HOH . F 5 HOH A 22 322 107 HOH HOH . F 5 HOH A 23 323 11 HOH HOH . F 5 HOH A 24 324 238 HOH HOH . F 5 HOH A 25 325 5 HOH HOH . F 5 HOH A 26 326 10 HOH HOH . F 5 HOH A 27 327 232 HOH HOH . F 5 HOH A 28 328 39 HOH HOH . F 5 HOH A 29 329 197 HOH HOH . F 5 HOH A 30 330 51 HOH HOH . F 5 HOH A 31 331 241 HOH HOH . F 5 HOH A 32 332 231 HOH HOH . F 5 HOH A 33 333 253 HOH HOH . F 5 HOH A 34 334 3 HOH HOH . F 5 HOH A 35 335 108 HOH HOH . F 5 HOH A 36 336 129 HOH HOH . F 5 HOH A 37 337 195 HOH HOH . F 5 HOH A 38 338 14 HOH HOH . F 5 HOH A 39 339 17 HOH HOH . F 5 HOH A 40 340 159 HOH HOH . F 5 HOH A 41 341 25 HOH HOH . F 5 HOH A 42 342 211 HOH HOH . F 5 HOH A 43 343 19 HOH HOH . F 5 HOH A 44 344 200 HOH HOH . F 5 HOH A 45 345 249 HOH HOH . F 5 HOH A 46 346 234 HOH HOH . F 5 HOH A 47 347 247 HOH HOH . F 5 HOH A 48 348 176 HOH HOH . F 5 HOH A 49 349 22 HOH HOH . F 5 HOH A 50 350 175 HOH HOH . F 5 HOH A 51 351 225 HOH HOH . F 5 HOH A 52 352 6 HOH HOH . F 5 HOH A 53 353 28 HOH HOH . F 5 HOH A 54 354 20 HOH HOH . F 5 HOH A 55 355 239 HOH HOH . F 5 HOH A 56 356 236 HOH HOH . F 5 HOH A 57 357 245 HOH HOH . F 5 HOH A 58 358 24 HOH HOH . F 5 HOH A 59 359 182 HOH HOH . F 5 HOH A 60 360 140 HOH HOH . F 5 HOH A 61 361 120 HOH HOH . F 5 HOH A 62 362 46 HOH HOH . F 5 HOH A 63 363 112 HOH HOH . F 5 HOH A 64 364 2 HOH HOH . F 5 HOH A 65 365 139 HOH HOH . F 5 HOH A 66 366 52 HOH HOH . F 5 HOH A 67 367 41 HOH HOH . F 5 HOH A 68 368 237 HOH HOH . F 5 HOH A 69 369 251 HOH HOH . F 5 HOH A 70 370 26 HOH HOH . F 5 HOH A 71 371 235 HOH HOH . F 5 HOH A 72 372 240 HOH HOH . F 5 HOH A 73 373 194 HOH HOH . F 5 HOH A 74 374 205 HOH HOH . F 5 HOH A 75 375 252 HOH HOH . F 5 HOH A 76 376 201 HOH HOH . F 5 HOH A 77 377 209 HOH HOH . F 5 HOH A 78 378 71 HOH HOH . F 5 HOH A 79 379 213 HOH HOH . F 5 HOH A 80 380 202 HOH HOH . F 5 HOH A 81 381 233 HOH HOH . F 5 HOH A 82 382 92 HOH HOH . F 5 HOH A 83 383 207 HOH HOH . F 5 HOH A 84 384 101 HOH HOH . F 5 HOH A 85 385 190 HOH HOH . F 5 HOH A 86 386 40 HOH HOH . F 5 HOH A 87 387 244 HOH HOH . F 5 HOH A 88 388 242 HOH HOH . F 5 HOH A 89 389 192 HOH HOH . F 5 HOH A 90 390 54 HOH HOH . F 5 HOH A 91 391 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 1.207 4.809 27.726 1 48.32 ? N1A COA 201 A 1 HETATM 2 C C2A COA . . . B 2 0.743 5.711 26.85 1 44.44 ? C2A COA 201 A 1 HETATM 3 N N3A COA . . . B 2 -0.404 5.716 26.174 1 40.72 ? N3A COA 201 A 1 HETATM 4 C C4A COA . . . B 2 -1.137 4.632 26.478 1 48.17 ? C4A COA 201 A 1 HETATM 5 C C5A COA . . . B 2 -0.802 3.625 27.358 1 41.78 ? C5A COA 201 A 1 HETATM 6 C C6A COA . . . B 2 0.439 3.73 28.015 1 48.36 ? C6A COA 201 A 1 HETATM 7 N N6A COA . . . B 2 0.895 2.828 28.88 1 55.35 ? N6A COA 201 A 1 HETATM 8 N N7A COA . . . B 2 -1.813 2.673 27.409 1 40.67 ? N7A COA 201 A 1 HETATM 9 C C8A COA . . . B 2 -2.724 3.112 26.572 1 43.43 ? C8A COA 201 A 1 HETATM 10 N N9A COA . . . B 2 -2.371 4.303 25.984 1 44.45 ? N9A COA 201 A 1 HETATM 11 C C1B COA . . . B 2 -3.134 5.049 24.989 1 52.3 ? C1B COA 201 A 1 HETATM 12 C C2B COA . . . B 2 -3.395 6.517 25.31 1 53.11 ? C2B COA 201 A 1 HETATM 13 O O2B COA . . . B 2 -4.553 6.663 26.103 1 51.73 ? O2B COA 201 A 1 HETATM 14 C C3B COA . . . B 2 -3.573 7.087 23.903 1 47.55 ? C3B COA 201 A 1 HETATM 15 O O3B COA . . . B 2 -4.888 6.8 23.426 1 55.19 ? O3B COA 201 A 1 HETATM 16 P P3B COA . . . B 2 -5.572 8.027 22.63 1 68.08 ? P3B COA 201 A 1 HETATM 17 O O7A COA . . . B 2 -4.834 8.155 21.312 1 72.44 ? O7A COA 201 A 1 HETATM 18 O O8A COA . . . B 2 -7.024 7.634 22.435 1 53.38 ? O8A COA 201 A 1 HETATM 19 O O9A COA . . . B 2 -5.426 9.267 23.493 1 72.21 ? O9A COA 201 A 1 HETATM 20 C C4B COA . . . B 2 -2.532 6.31 23.104 1 47.06 ? C4B COA 201 A 1 HETATM 21 O O4B COA . . . B 2 -2.392 5.04 23.791 1 51.48 ? O4B COA 201 A 1 HETATM 22 C C5B COA . . . B 2 -1.175 6.96 22.992 1 37.05 ? C5B COA 201 A 1 HETATM 23 O O5B COA . . . B 2 -0.232 5.997 22.45 1 42.49 ? O5B COA 201 A 1 HETATM 24 P P1A COA . . . B 2 1.066 6.529 21.673 1 43.61 ? P1A COA 201 A 1 HETATM 25 O O1A COA . . . B 2 2.017 5.4 21.449 1 39.29 ? O1A COA 201 A 1 HETATM 26 O O2A COA . . . B 2 1.581 7.754 22.351 1 47.62 ? O2A COA 201 A 1 HETATM 27 O O3A COA . . . B 2 0.417 6.959 20.274 1 39.05 ? O3A COA 201 A 1 HETATM 28 P P2A COA . . . B 2 -0.541 6.229 19.218 1 44.72 ? P2A COA 201 A 1 HETATM 29 O O4A COA . . . B 2 -0.596 4.771 19.53 1 54.71 ? O4A COA 201 A 1 HETATM 30 O O5A COA . . . B 2 -1.815 6.998 19.111 1 37.97 ? O5A COA 201 A 1 HETATM 31 O O6A COA . . . B 2 0.282 6.442 17.86 1 41.79 ? O6A COA 201 A 1 HETATM 32 C CBP COA . . . B 2 1.147 7.739 15.992 1 35.31 ? CBP COA 201 A 1 HETATM 33 C CCP COA . . . B 2 0.493 7.796 17.371 1 43.53 ? CCP COA 201 A 1 HETATM 34 C CDP COA . . . B 2 1.366 9.174 15.491 1 43.08 ? CDP COA 201 A 1 HETATM 35 C CEP COA . . . B 2 2.506 7.036 16.121 1 36.06 ? CEP COA 201 A 1 HETATM 36 C CAP COA . . . B 2 0.251 6.974 15.007 1 36.32 ? CAP COA 201 A 1 HETATM 37 O OAP COA . . . B 2 -1.028 7.596 14.976 1 39.93 ? OAP COA 201 A 1 HETATM 38 C C9P COA . . . B 2 0.81 6.898 13.594 1 39.84 ? C9P COA 201 A 1 HETATM 39 O O9P COA . . . B 2 1.753 6.149 13.342 1 38.54 ? O9P COA 201 A 1 HETATM 40 N N8P COA . . . B 2 0.23 7.66 12.677 1 39.05 ? N8P COA 201 A 1 HETATM 41 C C7P COA . . . B 2 0.753 7.82 11.329 1 45.18 ? C7P COA 201 A 1 HETATM 42 C C6P COA . . . B 2 0.476 6.616 10.456 1 41.15 ? C6P COA 201 A 1 HETATM 43 C C5P COA . . . B 2 1.129 6.756 9.099 1 41.75 ? C5P COA 201 A 1 HETATM 44 O O5P COA . . . B 2 1.624 7.824 8.741 1 47.35 ? O5P COA 201 A 1 HETATM 45 N N4P COA . . . B 2 1.146 5.672 8.318 1 40.74 ? N4P COA 201 A 1 HETATM 46 C C3P COA . . . B 2 1.578 5.697 6.93 1 45.29 ? C3P COA 201 A 1 HETATM 47 C C2P COA . . . B 2 2.431 4.515 6.569 1 47.43 ? C2P COA 201 A 1 HETATM 48 S S1P COA . . . B 2 3.263 4.817 4.991 1 50.73 ? S1P COA 201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #