data_7KYM # _model_server_result.job_id PjMLnx6Ii6sqhVmZiYTm9g _model_server_result.datetime_utc '2024-11-25 22:33:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7KYM # _exptl.entry_id 7KYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KYM _cell.length_a 47.265 _cell.length_b 62.125 _cell.length_c 92.763 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_466 x-1/2,-y+3/2,-z+1 1 0 0 0 -1 0 0 0 -1 -23.6325 93.1875 92.763 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 7KYM _atom_sites.fract_transf_matrix[1][1] 0.021157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 201 1 PO4 PO4 . D 2 PO4 A 1 202 2 PO4 PO4 . E 3 HOH A 1 301 129 HOH HOH . E 3 HOH A 2 302 227 HOH HOH . E 3 HOH A 3 303 73 HOH HOH . E 3 HOH A 4 304 67 HOH HOH . E 3 HOH A 5 305 175 HOH HOH . E 3 HOH A 6 306 13 HOH HOH . E 3 HOH A 7 307 66 HOH HOH . E 3 HOH A 8 308 178 HOH HOH . E 3 HOH A 9 309 260 HOH HOH . E 3 HOH A 10 310 202 HOH HOH . E 3 HOH A 11 311 161 HOH HOH . E 3 HOH A 12 312 104 HOH HOH . E 3 HOH A 13 313 146 HOH HOH . E 3 HOH A 14 314 32 HOH HOH . E 3 HOH A 15 315 152 HOH HOH . E 3 HOH A 16 316 245 HOH HOH . E 3 HOH A 17 317 1 HOH HOH . E 3 HOH A 18 318 29 HOH HOH . E 3 HOH A 19 319 256 HOH HOH . E 3 HOH A 20 320 50 HOH HOH . E 3 HOH A 21 321 10 HOH HOH . E 3 HOH A 22 322 261 HOH HOH . E 3 HOH A 23 323 252 HOH HOH . E 3 HOH A 24 324 15 HOH HOH . E 3 HOH A 25 325 136 HOH HOH . E 3 HOH A 26 326 44 HOH HOH . E 3 HOH A 27 327 63 HOH HOH . E 3 HOH A 28 328 80 HOH HOH . E 3 HOH A 29 329 113 HOH HOH . E 3 HOH A 30 330 262 HOH HOH . E 3 HOH A 31 331 269 HOH HOH . E 3 HOH A 32 332 147 HOH HOH . E 3 HOH A 33 333 181 HOH HOH . E 3 HOH A 34 334 250 HOH HOH . E 3 HOH A 35 335 165 HOH HOH . E 3 HOH A 36 336 59 HOH HOH . E 3 HOH A 37 337 25 HOH HOH . E 3 HOH A 38 338 143 HOH HOH . E 3 HOH A 39 339 237 HOH HOH . E 3 HOH A 40 340 168 HOH HOH . E 3 HOH A 41 341 71 HOH HOH . E 3 HOH A 42 342 22 HOH HOH . E 3 HOH A 43 343 79 HOH HOH . E 3 HOH A 44 344 27 HOH HOH . E 3 HOH A 45 345 4 HOH HOH . E 3 HOH A 46 346 192 HOH HOH . E 3 HOH A 47 347 265 HOH HOH . E 3 HOH A 48 348 123 HOH HOH . E 3 HOH A 49 349 38 HOH HOH . E 3 HOH A 50 350 170 HOH HOH . E 3 HOH A 51 351 30 HOH HOH . E 3 HOH A 52 352 74 HOH HOH . E 3 HOH A 53 353 69 HOH HOH . E 3 HOH A 54 354 51 HOH HOH . E 3 HOH A 55 355 34 HOH HOH . E 3 HOH A 56 356 39 HOH HOH . E 3 HOH A 57 357 190 HOH HOH . E 3 HOH A 58 358 9 HOH HOH . E 3 HOH A 59 359 101 HOH HOH . E 3 HOH A 60 360 148 HOH HOH . E 3 HOH A 61 361 81 HOH HOH . E 3 HOH A 62 362 228 HOH HOH . E 3 HOH A 63 363 211 HOH HOH . E 3 HOH A 64 364 97 HOH HOH . E 3 HOH A 65 365 5 HOH HOH . E 3 HOH A 66 366 61 HOH HOH . E 3 HOH A 67 367 206 HOH HOH . E 3 HOH A 68 368 154 HOH HOH . E 3 HOH A 69 369 182 HOH HOH . E 3 HOH A 70 370 87 HOH HOH . E 3 HOH A 71 371 284 HOH HOH . E 3 HOH A 72 372 259 HOH HOH . E 3 HOH A 73 373 276 HOH HOH . E 3 HOH A 74 374 139 HOH HOH . E 3 HOH A 75 375 235 HOH HOH . E 3 HOH A 76 376 75 HOH HOH . E 3 HOH A 77 377 14 HOH HOH . E 3 HOH A 78 378 194 HOH HOH . E 3 HOH A 79 379 288 HOH HOH . E 3 HOH A 80 380 126 HOH HOH . E 3 HOH A 81 381 2 HOH HOH . E 3 HOH A 82 382 55 HOH HOH . E 3 HOH A 83 383 8 HOH HOH . E 3 HOH A 84 384 272 HOH HOH . E 3 HOH A 85 385 78 HOH HOH . E 3 HOH A 86 386 162 HOH HOH . E 3 HOH A 87 387 72 HOH HOH . E 3 HOH A 88 388 47 HOH HOH . E 3 HOH A 89 389 105 HOH HOH . E 3 HOH A 90 390 195 HOH HOH . E 3 HOH A 91 391 24 HOH HOH . E 3 HOH A 92 392 157 HOH HOH . E 3 HOH A 93 393 114 HOH HOH . E 3 HOH A 94 394 193 HOH HOH . E 3 HOH A 95 395 130 HOH HOH . E 3 HOH A 96 396 176 HOH HOH . E 3 HOH A 97 397 249 HOH HOH . E 3 HOH A 98 398 91 HOH HOH . E 3 HOH A 99 399 247 HOH HOH . E 3 HOH A 100 400 58 HOH HOH . E 3 HOH A 101 401 171 HOH HOH . E 3 HOH A 102 402 198 HOH HOH . E 3 HOH A 103 403 135 HOH HOH . E 3 HOH A 104 404 155 HOH HOH . E 3 HOH A 105 405 52 HOH HOH . E 3 HOH A 106 406 76 HOH HOH . E 3 HOH A 107 407 37 HOH HOH . E 3 HOH A 108 408 56 HOH HOH . E 3 HOH A 109 409 65 HOH HOH . E 3 HOH A 110 410 246 HOH HOH . E 3 HOH A 111 411 257 HOH HOH . E 3 HOH A 112 412 291 HOH HOH . E 3 HOH A 113 413 205 HOH HOH . E 3 HOH A 114 414 280 HOH HOH . E 3 HOH A 115 415 172 HOH HOH . E 3 HOH A 116 416 254 HOH HOH . E 3 HOH A 117 417 204 HOH HOH . E 3 HOH A 118 418 160 HOH HOH . E 3 HOH A 119 419 118 HOH HOH . E 3 HOH A 120 420 43 HOH HOH . E 3 HOH A 121 421 150 HOH HOH . E 3 HOH A 122 422 244 HOH HOH . E 3 HOH A 123 423 179 HOH HOH . E 3 HOH A 124 424 277 HOH HOH . E 3 HOH A 125 425 286 HOH HOH . E 3 HOH A 126 426 127 HOH HOH . E 3 HOH A 127 427 49 HOH HOH . E 3 HOH A 128 428 233 HOH HOH . E 3 HOH A 129 429 266 HOH HOH . E 3 HOH A 130 430 99 HOH HOH . E 3 HOH A 131 431 232 HOH HOH . E 3 HOH A 132 432 111 HOH HOH . E 3 HOH A 133 433 120 HOH HOH . E 3 HOH A 134 434 219 HOH HOH . E 3 HOH A 135 435 138 HOH HOH . E 3 HOH A 136 436 241 HOH HOH . E 3 HOH A 137 437 163 HOH HOH . E 3 HOH A 138 438 183 HOH HOH . E 3 HOH A 139 439 224 HOH HOH . E 3 HOH A 140 440 159 HOH HOH . E 3 HOH A 141 441 274 HOH HOH . E 3 HOH A 142 442 236 HOH HOH . E 3 HOH A 143 443 270 HOH HOH . E 3 HOH A 144 444 166 HOH HOH . F 3 HOH B 1 201 209 HOH HOH . F 3 HOH B 2 202 177 HOH HOH . F 3 HOH B 3 203 216 HOH HOH . F 3 HOH B 4 204 82 HOH HOH . F 3 HOH B 5 205 263 HOH HOH . F 3 HOH B 6 206 278 HOH HOH . F 3 HOH B 7 207 242 HOH HOH . F 3 HOH B 8 208 221 HOH HOH . F 3 HOH B 9 209 149 HOH HOH . F 3 HOH B 10 210 173 HOH HOH . F 3 HOH B 11 211 88 HOH HOH . F 3 HOH B 12 212 116 HOH HOH . F 3 HOH B 13 213 253 HOH HOH . F 3 HOH B 14 214 107 HOH HOH . F 3 HOH B 15 215 230 HOH HOH . F 3 HOH B 16 216 46 HOH HOH . F 3 HOH B 17 217 248 HOH HOH . F 3 HOH B 18 218 243 HOH HOH . F 3 HOH B 19 219 108 HOH HOH . F 3 HOH B 20 220 112 HOH HOH . F 3 HOH B 21 221 231 HOH HOH . F 3 HOH B 22 222 142 HOH HOH . F 3 HOH B 23 223 200 HOH HOH . F 3 HOH B 24 224 18 HOH HOH . F 3 HOH B 25 225 3 HOH HOH . F 3 HOH B 26 226 271 HOH HOH . F 3 HOH B 27 227 234 HOH HOH . F 3 HOH B 28 228 267 HOH HOH . F 3 HOH B 29 229 187 HOH HOH . F 3 HOH B 30 230 21 HOH HOH . F 3 HOH B 31 231 282 HOH HOH . F 3 HOH B 32 232 84 HOH HOH . F 3 HOH B 33 233 226 HOH HOH . F 3 HOH B 34 234 96 HOH HOH . F 3 HOH B 35 235 60 HOH HOH . F 3 HOH B 36 236 268 HOH HOH . F 3 HOH B 37 237 85 HOH HOH . F 3 HOH B 38 238 7 HOH HOH . F 3 HOH B 39 239 86 HOH HOH . F 3 HOH B 40 240 35 HOH HOH . F 3 HOH B 41 241 122 HOH HOH . F 3 HOH B 42 242 145 HOH HOH . F 3 HOH B 43 243 57 HOH HOH . F 3 HOH B 44 244 23 HOH HOH . F 3 HOH B 45 245 184 HOH HOH . F 3 HOH B 46 246 201 HOH HOH . F 3 HOH B 47 247 169 HOH HOH . F 3 HOH B 48 248 164 HOH HOH . F 3 HOH B 49 249 42 HOH HOH . F 3 HOH B 50 250 180 HOH HOH . F 3 HOH B 51 251 54 HOH HOH . F 3 HOH B 52 252 94 HOH HOH . F 3 HOH B 53 253 19 HOH HOH . F 3 HOH B 54 254 140 HOH HOH . F 3 HOH B 55 255 133 HOH HOH . F 3 HOH B 56 256 191 HOH HOH . F 3 HOH B 57 257 26 HOH HOH . F 3 HOH B 58 258 83 HOH HOH . F 3 HOH B 59 259 98 HOH HOH . F 3 HOH B 60 260 68 HOH HOH . F 3 HOH B 61 261 89 HOH HOH . F 3 HOH B 62 262 90 HOH HOH . F 3 HOH B 63 263 62 HOH HOH . F 3 HOH B 64 264 12 HOH HOH . F 3 HOH B 65 265 106 HOH HOH . F 3 HOH B 66 266 117 HOH HOH . F 3 HOH B 67 267 16 HOH HOH . F 3 HOH B 68 268 212 HOH HOH . F 3 HOH B 69 269 215 HOH HOH . F 3 HOH B 70 270 174 HOH HOH . F 3 HOH B 71 271 222 HOH HOH . F 3 HOH B 72 272 40 HOH HOH . F 3 HOH B 73 273 95 HOH HOH . F 3 HOH B 74 274 208 HOH HOH . F 3 HOH B 75 275 167 HOH HOH . F 3 HOH B 76 276 31 HOH HOH . F 3 HOH B 77 277 100 HOH HOH . F 3 HOH B 78 278 28 HOH HOH . F 3 HOH B 79 279 293 HOH HOH . F 3 HOH B 80 280 41 HOH HOH . F 3 HOH B 81 281 119 HOH HOH . F 3 HOH B 82 282 53 HOH HOH . F 3 HOH B 83 283 156 HOH HOH . F 3 HOH B 84 284 17 HOH HOH . F 3 HOH B 85 285 110 HOH HOH . F 3 HOH B 86 286 229 HOH HOH . F 3 HOH B 87 287 103 HOH HOH . F 3 HOH B 88 288 223 HOH HOH . F 3 HOH B 89 289 189 HOH HOH . F 3 HOH B 90 290 11 HOH HOH . F 3 HOH B 91 291 186 HOH HOH . F 3 HOH B 92 292 188 HOH HOH . F 3 HOH B 93 293 93 HOH HOH . F 3 HOH B 94 294 20 HOH HOH . F 3 HOH B 95 295 137 HOH HOH . F 3 HOH B 96 296 264 HOH HOH . F 3 HOH B 97 297 48 HOH HOH . F 3 HOH B 98 298 6 HOH HOH . F 3 HOH B 99 299 45 HOH HOH . F 3 HOH B 100 300 70 HOH HOH . F 3 HOH B 101 301 134 HOH HOH . F 3 HOH B 102 302 196 HOH HOH . F 3 HOH B 103 303 141 HOH HOH . F 3 HOH B 104 304 255 HOH HOH . F 3 HOH B 105 305 251 HOH HOH . F 3 HOH B 106 306 153 HOH HOH . F 3 HOH B 107 307 197 HOH HOH . F 3 HOH B 108 308 217 HOH HOH . F 3 HOH B 109 309 158 HOH HOH . F 3 HOH B 110 310 275 HOH HOH . F 3 HOH B 111 311 289 HOH HOH . F 3 HOH B 112 312 124 HOH HOH . F 3 HOH B 113 313 238 HOH HOH . F 3 HOH B 114 314 218 HOH HOH . F 3 HOH B 115 315 210 HOH HOH . F 3 HOH B 116 316 199 HOH HOH . F 3 HOH B 117 317 151 HOH HOH . F 3 HOH B 118 318 77 HOH HOH . F 3 HOH B 119 319 115 HOH HOH . F 3 HOH B 120 320 185 HOH HOH . F 3 HOH B 121 321 287 HOH HOH . F 3 HOH B 122 322 125 HOH HOH . F 3 HOH B 123 323 290 HOH HOH . F 3 HOH B 124 324 128 HOH HOH . F 3 HOH B 125 325 144 HOH HOH . F 3 HOH B 126 326 203 HOH HOH . F 3 HOH B 127 327 132 HOH HOH . F 3 HOH B 128 328 283 HOH HOH . F 3 HOH B 129 329 214 HOH HOH . F 3 HOH B 130 330 225 HOH HOH . F 3 HOH B 131 331 273 HOH HOH . F 3 HOH B 132 332 279 HOH HOH . F 3 HOH B 133 333 109 HOH HOH . F 3 HOH B 134 334 239 HOH HOH . F 3 HOH B 135 335 102 HOH HOH . F 3 HOH B 136 336 33 HOH HOH . F 3 HOH B 137 337 285 HOH HOH . F 3 HOH B 138 338 207 HOH HOH . F 3 HOH B 139 339 92 HOH HOH . F 3 HOH B 140 340 121 HOH HOH . F 3 HOH B 141 341 131 HOH HOH . F 3 HOH B 142 342 64 HOH HOH . F 3 HOH B 143 343 258 HOH HOH . F 3 HOH B 144 344 36 HOH HOH . F 3 HOH B 145 345 213 HOH HOH . F 3 HOH B 146 346 240 HOH HOH . F 3 HOH B 147 347 292 HOH HOH . F 3 HOH B 148 348 281 HOH HOH . F 3 HOH B 149 349 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 16.222 44.91 58.525 1 16.38 ? P PO4 202 A 1 HETATM 2 O O1 PO4 . . . D 2 16.231 45.057 57.032 1 16.83 ? O1 PO4 202 A 1 HETATM 3 O O2 PO4 . . . D 2 17.54 44.316 58.934 1 15.8 ? O2 PO4 202 A 1 HETATM 4 O O3 PO4 . . . D 2 15.145 43.952 58.96 1 19.8 ? O3 PO4 202 A 1 HETATM 5 O O4 PO4 . . . D 2 16.025 46.221 59.199 1 14.77 ? O4 PO4 202 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #