data_7KYR # _model_server_result.job_id RmhB0m_hn9RmdjXPEsNtwg _model_server_result.datetime_utc '2024-10-19 20:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kyr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7KYR # _exptl.entry_id 7KYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.353 _cell.angle_gamma 90 _cell.entry_id 7KYR _cell.length_a 34.016 _cell.length_b 31.728 _cell.length_c 71.283 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 45 A ASP 44 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc2 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 B FE HEM . A HEM 201 1_555 G O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc4 F NA NA . A NA 205 1_555 G O HOH . A HOH 311 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 F NA NA . A NA 205 1_555 G O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc6 F NA NA . A NA 205 1_555 G O HOH . A HOH 361 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 F NA NA . A NA 205 1_555 G O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc8 F NA NA . A NA 205 1_555 G O HOH . A HOH 392 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 315 n n O1 HO1 PG4 sing 316 n n C1 C2 PG4 sing 317 n n C1 H11 PG4 sing 318 n n C1 H12 PG4 sing 319 n n C2 O2 PG4 sing 320 n n C2 H21 PG4 sing 321 n n C2 H22 PG4 sing 322 n n O2 C3 PG4 sing 323 n n C3 C4 PG4 sing 324 n n C3 H31 PG4 sing 325 n n C3 H32 PG4 sing 326 n n C4 O3 PG4 sing 327 n n C4 H41 PG4 sing 328 n n C4 H42 PG4 sing 329 n n O3 C5 PG4 sing 330 n n C5 C6 PG4 sing 331 n n C5 H51 PG4 sing 332 n n C5 H52 PG4 sing 333 n n C6 O4 PG4 sing 334 n n C6 H61 PG4 sing 335 n n C6 H62 PG4 sing 336 n n O4 C7 PG4 sing 337 n n C7 C8 PG4 sing 338 n n C7 H71 PG4 sing 339 n n C7 H72 PG4 sing 340 n n C8 O5 PG4 sing 341 n n C8 H81 PG4 sing 342 n n C8 H82 PG4 sing 343 n n O5 HO5 PG4 sing 344 n n # _atom_sites.entry_id 7KYR _atom_sites.fract_transf_matrix[1][1] 0.029398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006438 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.031518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 PG4 A 1 202 301 PG4 PG4 . D 4 EDO A 1 203 302 EDO EDO . E 5 SO4 A 1 204 304 SO4 SO4 . F 6 NA A 1 205 305 NA NA . G 7 HOH A 1 301 549 HOH HOH . G 7 HOH A 2 302 517 HOH HOH . G 7 HOH A 3 303 483 HOH HOH . G 7 HOH A 4 304 550 HOH HOH . G 7 HOH A 5 305 405 HOH HOH . G 7 HOH A 6 306 478 HOH HOH . G 7 HOH A 7 307 526 HOH HOH . G 7 HOH A 8 308 488 HOH HOH . G 7 HOH A 9 309 470 HOH HOH . G 7 HOH A 10 310 461 HOH HOH . G 7 HOH A 11 311 547 HOH HOH . G 7 HOH A 12 312 421 HOH HOH . G 7 HOH A 13 313 469 HOH HOH . G 7 HOH A 14 314 527 HOH HOH . G 7 HOH A 15 315 489 HOH HOH . G 7 HOH A 16 316 529 HOH HOH . G 7 HOH A 17 317 407 HOH HOH . G 7 HOH A 18 318 445 HOH HOH . G 7 HOH A 19 319 563 HOH HOH . G 7 HOH A 20 320 570 HOH HOH . G 7 HOH A 21 321 514 HOH HOH . G 7 HOH A 22 322 404 HOH HOH . G 7 HOH A 23 323 420 HOH HOH . G 7 HOH A 24 324 415 HOH HOH . G 7 HOH A 25 325 414 HOH HOH . G 7 HOH A 26 326 413 HOH HOH . G 7 HOH A 27 327 443 HOH HOH . G 7 HOH A 28 328 435 HOH HOH . G 7 HOH A 29 329 437 HOH HOH . G 7 HOH A 30 330 434 HOH HOH . G 7 HOH A 31 331 401 HOH HOH . G 7 HOH A 32 332 402 HOH HOH . G 7 HOH A 33 333 416 HOH HOH . G 7 HOH A 34 334 409 HOH HOH . G 7 HOH A 35 335 516 HOH HOH . G 7 HOH A 36 336 440 HOH HOH . G 7 HOH A 37 337 430 HOH HOH . G 7 HOH A 38 338 551 HOH HOH . G 7 HOH A 39 339 408 HOH HOH . G 7 HOH A 40 340 524 HOH HOH . G 7 HOH A 41 341 412 HOH HOH . G 7 HOH A 42 342 460 HOH HOH . G 7 HOH A 43 343 442 HOH HOH . G 7 HOH A 44 344 454 HOH HOH . G 7 HOH A 45 345 418 HOH HOH . G 7 HOH A 46 346 436 HOH HOH . G 7 HOH A 47 347 564 HOH HOH . G 7 HOH A 48 348 521 HOH HOH . G 7 HOH A 49 349 531 HOH HOH . G 7 HOH A 50 350 419 HOH HOH . G 7 HOH A 51 351 546 HOH HOH . G 7 HOH A 52 352 474 HOH HOH . G 7 HOH A 53 353 417 HOH HOH . G 7 HOH A 54 354 466 HOH HOH . G 7 HOH A 55 355 497 HOH HOH . G 7 HOH A 56 356 425 HOH HOH . G 7 HOH A 57 357 431 HOH HOH . G 7 HOH A 58 358 475 HOH HOH . G 7 HOH A 59 359 422 HOH HOH . G 7 HOH A 60 360 541 HOH HOH . G 7 HOH A 61 361 492 HOH HOH . G 7 HOH A 62 362 463 HOH HOH . G 7 HOH A 63 363 575 HOH HOH . G 7 HOH A 64 364 403 HOH HOH . G 7 HOH A 65 365 567 HOH HOH . G 7 HOH A 66 366 486 HOH HOH . G 7 HOH A 67 367 555 HOH HOH . G 7 HOH A 68 368 438 HOH HOH . G 7 HOH A 69 369 499 HOH HOH . G 7 HOH A 70 370 406 HOH HOH . G 7 HOH A 71 371 462 HOH HOH . G 7 HOH A 72 372 480 HOH HOH . G 7 HOH A 73 373 448 HOH HOH . G 7 HOH A 74 374 569 HOH HOH . G 7 HOH A 75 375 441 HOH HOH . G 7 HOH A 76 376 572 HOH HOH . G 7 HOH A 77 377 581 HOH HOH . G 7 HOH A 78 378 439 HOH HOH . G 7 HOH A 79 379 459 HOH HOH . G 7 HOH A 80 380 500 HOH HOH . G 7 HOH A 81 381 491 HOH HOH . G 7 HOH A 82 382 427 HOH HOH . G 7 HOH A 83 383 428 HOH HOH . G 7 HOH A 84 384 477 HOH HOH . G 7 HOH A 85 385 452 HOH HOH . G 7 HOH A 86 386 490 HOH HOH . G 7 HOH A 87 387 467 HOH HOH . G 7 HOH A 88 388 424 HOH HOH . G 7 HOH A 89 389 464 HOH HOH . G 7 HOH A 90 390 577 HOH HOH . G 7 HOH A 91 391 476 HOH HOH . G 7 HOH A 92 392 548 HOH HOH . G 7 HOH A 93 393 571 HOH HOH . G 7 HOH A 94 394 458 HOH HOH . G 7 HOH A 95 395 579 HOH HOH . G 7 HOH A 96 396 576 HOH HOH . G 7 HOH A 97 397 578 HOH HOH . G 7 HOH A 98 398 519 HOH HOH . G 7 HOH A 99 399 433 HOH HOH . G 7 HOH A 100 400 528 HOH HOH . G 7 HOH A 101 401 533 HOH HOH . G 7 HOH A 102 402 580 HOH HOH . G 7 HOH A 103 403 545 HOH HOH . G 7 HOH A 104 404 511 HOH HOH . G 7 HOH A 105 405 530 HOH HOH . G 7 HOH A 106 406 498 HOH HOH . G 7 HOH A 107 407 568 HOH HOH . G 7 HOH A 108 408 536 HOH HOH . G 7 HOH A 109 409 518 HOH HOH . G 7 HOH A 110 410 542 HOH HOH . G 7 HOH A 111 411 506 HOH HOH . G 7 HOH A 112 412 525 HOH HOH . G 7 HOH A 113 413 557 HOH HOH . G 7 HOH A 114 414 566 HOH HOH . G 7 HOH A 115 415 574 HOH HOH . G 7 HOH A 116 416 494 HOH HOH . G 7 HOH A 117 417 562 HOH HOH . G 7 HOH A 118 418 561 HOH HOH . G 7 HOH A 119 419 565 HOH HOH . G 7 HOH A 120 420 522 HOH HOH . G 7 HOH A 121 421 432 HOH HOH . G 7 HOH A 122 422 484 HOH HOH . G 7 HOH A 123 423 515 HOH HOH . G 7 HOH A 124 424 573 HOH HOH . G 7 HOH A 125 425 456 HOH HOH . G 7 HOH A 126 426 447 HOH HOH . G 7 HOH A 127 427 523 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . C 3 3.233 -9.703 3.786 1 47.81 ? O1 PG4 202 A 1 HETATM 2 C C1 PG4 . . . C 3 4.026 -8.949 4.661 1 55.51 ? C1 PG4 202 A 1 HETATM 3 C C2 PG4 . . . C 3 4.75 -9.885 5.628 1 46.95 ? C2 PG4 202 A 1 HETATM 4 O O2 PG4 . . . C 3 5.847 -10.461 4.978 1 41.6 ? O2 PG4 202 A 1 HETATM 5 C C3 PG4 . . . C 3 6.679 -11.216 5.812 1 42.15 ? C3 PG4 202 A 1 HETATM 6 C C4 PG4 . . . C 3 7.81 -11.809 4.974 1 35.93 ? C4 PG4 202 A 1 HETATM 7 O O3 PG4 . . . C 3 7.277 -12.555 3.917 1 41.15 ? O3 PG4 202 A 1 HETATM 8 C C5 PG4 . . . C 3 8.248 -13.208 3.154 1 47.33 ? C5 PG4 202 A 1 HETATM 9 C C6 PG4 . . . C 3 7.58 -14.066 2.084 1 51.21 ? C6 PG4 202 A 1 HETATM 10 O O4 PG4 . . . C 3 6.885 -13.263 1.171 1 64.37 ? O4 PG4 202 A 1 HETATM 11 C C7 PG4 . . . C 3 6.265 -14.002 0.155 1 49.74 ? C7 PG4 202 A 1 HETATM 12 C C8 PG4 . . . C 3 5.533 -13.064 -0.803 1 69.56 ? C8 PG4 202 A 1 HETATM 13 O O5 PG4 . . . C 3 6.464 -12.357 -1.577 1 68.02 ? O5 PG4 202 A 1 HETATM 14 H HO1 PG4 . . . C 3 2.324 -9.486 3.921 1 57.38 ? HO1 PG4 202 A 1 HETATM 15 H H11 PG4 . . . C 3 4.756 -8.384 4.091 1 66.63 ? H11 PG4 202 A 1 HETATM 16 H H12 PG4 . . . C 3 3.397 -8.266 5.222 1 66.63 ? H12 PG4 202 A 1 HETATM 17 H H21 PG4 . . . C 3 5.094 -9.322 6.489 1 56.35 ? H21 PG4 202 A 1 HETATM 18 H H22 PG4 . . . C 3 4.071 -10.666 5.954 1 56.35 ? H22 PG4 202 A 1 HETATM 19 H H31 PG4 . . . C 3 7.094 -10.579 6.586 1 50.59 ? H31 PG4 202 A 1 HETATM 20 H H32 PG4 . . . C 3 6.107 -12.016 6.27 1 50.59 ? H32 PG4 202 A 1 HETATM 21 H H41 PG4 . . . C 3 8.422 -11.006 4.575 1 43.13 ? H41 PG4 202 A 1 HETATM 22 H H42 PG4 . . . C 3 8.421 -12.453 5.598 1 43.13 ? H42 PG4 202 A 1 HETATM 23 H H51 PG4 . . . C 3 8.885 -12.471 2.678 1 56.81 ? H51 PG4 202 A 1 HETATM 24 H H52 PG4 . . . C 3 8.847 -13.841 3.8 1 56.81 ? H52 PG4 202 A 1 HETATM 25 H H61 PG4 . . . C 3 8.34 -14.631 1.555 1 61.47 ? H61 PG4 202 A 1 HETATM 26 H H62 PG4 . . . C 3 6.885 -14.75 2.559 1 61.47 ? H62 PG4 202 A 1 HETATM 27 H H71 PG4 . . . C 3 7.017 -14.559 -0.394 1 59.71 ? H71 PG4 202 A 1 HETATM 28 H H72 PG4 . . . C 3 5.553 -14.692 0.595 1 59.71 ? H72 PG4 202 A 1 HETATM 29 H H81 PG4 . . . C 3 4.888 -13.645 -1.454 1 83.49 ? H81 PG4 202 A 1 HETATM 30 H H82 PG4 . . . C 3 4.932 -12.363 -0.232 1 83.49 ? H82 PG4 202 A 1 HETATM 31 H HO5 PG4 . . . C 3 7.312 -12.764 -1.5 1 81.64 ? HO5 PG4 202 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #