data_7KYV # _model_server_result.job_id -VaBOygu7tbZBqEWnYsf0w _model_server_result.datetime_utc '2024-11-25 16:36:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 7KYV # _exptl.entry_id 7KYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-methyl-N-[(1R)-1-(5-methyl-1,2-oxazol-3-yl)ethyl]-4-{[4-(trifluoromethyl)phenyl]methyl}-1H-pyrrole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KYV _cell.length_a 85.288 _cell.length_b 85.288 _cell.length_c 139.216 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H20 F3 N3 O2' _chem_comp.formula_weight 391.387 _chem_comp.id XBY _chem_comp.mon_nstd_flag . _chem_comp.name 3-methyl-N-[(1R)-1-(5-methyl-1,2-oxazol-3-yl)ethyl]-4-{[4-(trifluoromethyl)phenyl]methyl}-1H-pyrrole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F18 C17 XBY sing 458 n n C17 F20 XBY sing 459 n n C17 F19 XBY sing 460 n n C17 C14 XBY sing 461 n n C14 C13 XBY doub 462 n y C14 C15 XBY sing 463 n y C13 C12 XBY sing 464 n y C15 C16 XBY doub 465 n y C22 C21 XBY sing 466 n n C12 C11 XBY doub 467 n y O05 C04 XBY doub 468 n n C16 C11 XBY sing 469 n y C11 C10 XBY sing 470 n n C04 C06 XBY sing 471 n n C04 N03 XBY sing 472 n n C21 C06 XBY doub 473 n y C21 C09 XBY sing 474 n y N28 O27 XBY sing 475 n y N28 C23 XBY doub 476 n y C02 N03 XBY sing 477 n n C02 C23 XBY sing 478 n n C02 C01 XBY sing 479 n n C06 N07 XBY sing 480 n y C10 C09 XBY sing 481 n n O27 C25 XBY sing 482 n y C09 C08 XBY doub 483 n y C23 C24 XBY sing 484 n y N07 C08 XBY sing 485 n y C25 C24 XBY doub 486 n y C25 C26 XBY sing 487 n n C13 H131 XBY sing 488 n n C15 H151 XBY sing 489 n n C24 H241 XBY sing 490 n n C12 H121 XBY sing 491 n n C16 H161 XBY sing 492 n n C01 H011 XBY sing 493 n n C01 H012 XBY sing 494 n n C01 H013 XBY sing 495 n n C02 H021 XBY sing 496 n n C08 H081 XBY sing 497 n n C10 H101 XBY sing 498 n n C10 H102 XBY sing 499 n n C22 H221 XBY sing 500 n n C22 H223 XBY sing 501 n n C22 H222 XBY sing 502 n n C26 H262 XBY sing 503 n n C26 H261 XBY sing 504 n n C26 H263 XBY sing 505 n n N03 H031 XBY sing 506 n n N07 H071 XBY sing 507 n n # _atom_sites.entry_id 7KYV _atom_sites.fract_transf_matrix[1][1] 0.011725 _atom_sites.fract_transf_matrix[1][2] 0.006769 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XBY A 1 1001 1001 XBY 634 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 GOL A 1 1004 1004 GOL GOL . F 5 GOL A 1 1005 1005 GOL GOL . G 5 GOL A 1 1006 1007 GOL GOL . H 5 GOL A 1 1007 1008 GOL GOL . I 6 HOH A 1 1101 35 HOH HOH . I 6 HOH A 2 1102 22 HOH HOH . I 6 HOH A 3 1103 4 HOH HOH . I 6 HOH A 4 1104 45 HOH HOH . I 6 HOH A 5 1105 24 HOH HOH . I 6 HOH A 6 1106 43 HOH HOH . I 6 HOH A 7 1107 11 HOH HOH . I 6 HOH A 8 1108 38 HOH HOH . I 6 HOH A 9 1109 17 HOH HOH . I 6 HOH A 10 1110 42 HOH HOH . I 6 HOH A 11 1111 14 HOH HOH . I 6 HOH A 12 1112 5 HOH HOH . I 6 HOH A 13 1113 9 HOH HOH . I 6 HOH A 14 1114 30 HOH HOH . I 6 HOH A 15 1115 15 HOH HOH . I 6 HOH A 16 1116 41 HOH HOH . I 6 HOH A 17 1117 33 HOH HOH . I 6 HOH A 18 1118 19 HOH HOH . I 6 HOH A 19 1119 2 HOH HOH . I 6 HOH A 20 1120 12 HOH HOH . I 6 HOH A 21 1121 3 HOH HOH . I 6 HOH A 22 1122 61 HOH HOH . I 6 HOH A 23 1123 48 HOH HOH . I 6 HOH A 24 1124 27 HOH HOH . I 6 HOH A 25 1125 1 HOH HOH . I 6 HOH A 26 1126 10 HOH HOH . I 6 HOH A 27 1127 69 HOH HOH . I 6 HOH A 28 1128 56 HOH HOH . I 6 HOH A 29 1129 21 HOH HOH . I 6 HOH A 30 1130 89 HOH HOH . I 6 HOH A 31 1131 6 HOH HOH . I 6 HOH A 32 1132 25 HOH HOH . I 6 HOH A 33 1133 44 HOH HOH . I 6 HOH A 34 1134 20 HOH HOH . I 6 HOH A 35 1135 64 HOH HOH . I 6 HOH A 36 1136 78 HOH HOH . I 6 HOH A 37 1137 16 HOH HOH . I 6 HOH A 38 1138 31 HOH HOH . I 6 HOH A 39 1139 32 HOH HOH . I 6 HOH A 40 1140 68 HOH HOH . I 6 HOH A 41 1141 80 HOH HOH . I 6 HOH A 42 1142 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 XBY . . . B 2 92.24 30.005 -3.048 1 42.92 ? C13 XBY 1001 A 1 HETATM 2 C C15 XBY . . . B 2 92.774 32.305 -2.558 1 31.61 ? C15 XBY 1001 A 1 HETATM 3 C C21 XBY . . . B 2 88.118 29.529 -0.966 1 41.13 ? C21 XBY 1001 A 1 HETATM 4 C C24 XBY . . . B 2 85.682 23.643 1.156 1 50.4 ? C24 XBY 1001 A 1 HETATM 5 C C11 XBY . . . B 2 91.039 31.187 -1.363 1 44.34 ? C11 XBY 1001 A 1 HETATM 6 C C12 XBY . . . B 2 91.257 30.021 -2.082 1 40.87 ? C12 XBY 1001 A 1 HETATM 7 C C14 XBY . . . B 2 92.986 31.145 -3.281 1 37.98 ? C14 XBY 1001 A 1 HETATM 8 C C16 XBY . . . B 2 91.791 32.324 -1.59 1 27.52 ? C16 XBY 1001 A 1 HETATM 9 C C23 XBY . . . B 2 85.426 24.083 -0.137 1 44.7 ? C23 XBY 1001 A 1 HETATM 10 C C01 XBY . . . B 2 83.802 26.002 0.096 1 33.18 ? C01 XBY 1001 A 1 HETATM 11 C C02 XBY . . . B 2 85.07 25.495 -0.562 1 34.37 ? C02 XBY 1001 A 1 HETATM 12 C C04 XBY . . . B 2 86.543 27.455 -0.991 1 40.37 ? C04 XBY 1001 A 1 HETATM 13 C C06 XBY . . . B 2 87.705 28.299 -0.483 1 42.94 ? C06 XBY 1001 A 1 HETATM 14 C C08 XBY . . . B 2 89.371 28.948 0.771 1 41.12 ? C08 XBY 1001 A 1 HETATM 15 C C09 XBY . . . B 2 89.186 29.934 -0.176 1 42.28 ? C09 XBY 1001 A 1 HETATM 16 C C10 XBY . . . B 2 89.986 31.233 -0.298 1 47 ? C10 XBY 1001 A 1 HETATM 17 C C17 XBY . . . B 2 94.052 31.132 -4.337 1 47.15 ? C17 XBY 1001 A 1 HETATM 18 C C22 XBY . . . B 2 87.539 30.259 -2.133 1 45.79 ? C22 XBY 1001 A 1 HETATM 19 C C25 XBY . . . B 2 85.982 22.286 1.088 1 48.46 ? C25 XBY 1001 A 1 HETATM 20 C C26 XBY . . . B 2 86.327 21.366 2.247 1 37.57 ? C26 XBY 1001 A 1 HETATM 21 F F18 XBY . . . B 2 93.493 31.012 -5.55 1 55.27 ? F18 XBY 1001 A 1 HETATM 22 F F19 XBY . . . B 2 94.84 30.084 -4.098 1 51.72 ? F19 XBY 1001 A 1 HETATM 23 F F20 XBY . . . B 2 94.755 32.276 -4.277 1 55.43 ? F20 XBY 1001 A 1 HETATM 24 N N03 XBY . . . B 2 86.167 26.336 -0.198 1 41.44 ? N03 XBY 1001 A 1 HETATM 25 N N07 XBY . . . B 2 88.46 27.982 0.564 1 50.34 ? N07 XBY 1001 A 1 HETATM 26 N N28 XBY . . . B 2 85.567 23.041 -0.961 1 53.57 ? N28 XBY 1001 A 1 HETATM 27 O O05 XBY . . . B 2 85.933 27.744 -2.003 1 37.64 ? O05 XBY 1001 A 1 HETATM 28 O O27 XBY . . . B 2 85.915 21.933 -0.218 1 52.07 ? O27 XBY 1001 A 1 HETATM 29 H H131 XBY . . . B 2 92.407 29.196 -3.564 1 51.48 ? H131 XBY 1001 A 1 HETATM 30 H H151 XBY . . . B 2 93.31 33.095 -2.729 1 37.9 ? H151 XBY 1001 A 1 HETATM 31 H H241 XBY . . . B 2 85.656 24.187 1.966 1 60.45 ? H241 XBY 1001 A 1 HETATM 32 H H121 XBY . . . B 2 90.728 29.231 -1.908 1 49.02 ? H121 XBY 1001 A 1 HETATM 33 H H161 XBY . . . B 2 91.63 33.127 -1.075 1 33 ? H161 XBY 1001 A 1 HETATM 34 H H011 XBY . . . B 2 83.755 26.978 0.005 1 39.79 ? H011 XBY 1001 A 1 HETATM 35 H H012 XBY . . . B 2 83.809 25.761 1.048 1 39.79 ? H012 XBY 1001 A 1 HETATM 36 H H013 XBY . . . B 2 83.022 25.594 -0.34 1 39.79 ? H013 XBY 1001 A 1 HETATM 37 H H021 XBY . . . B 2 84.924 25.52 -1.532 1 41.22 ? H021 XBY 1001 A 1 HETATM 38 H H081 XBY . . . B 2 90.047 28.952 1.471 1 49.32 ? H081 XBY 1001 A 1 HETATM 39 H H101 XBY . . . B 2 89.366 31.96 -0.506 1 56.37 ? H101 XBY 1001 A 1 HETATM 40 H H102 XBY . . . B 2 90.42 31.411 0.56 1 56.37 ? H102 XBY 1001 A 1 HETATM 41 H H221 XBY . . . B 2 87.219 29.615 -2.792 1 54.92 ? H221 XBY 1001 A 1 HETATM 42 H H223 XBY . . . B 2 88.224 30.824 -2.535 1 54.92 ? H223 XBY 1001 A 1 HETATM 43 H H222 XBY . . . B 2 86.795 30.813 -1.833 1 54.92 ? H222 XBY 1001 A 1 HETATM 44 H H262 XBY . . . B 2 86.547 20.473 1.903 1 45.06 ? H262 XBY 1001 A 1 HETATM 45 H H261 XBY . . . B 2 85.558 21.302 2.855 1 45.06 ? H261 XBY 1001 A 1 HETATM 46 H H263 XBY . . . B 2 87.099 21.728 2.734 1 45.06 ? H263 XBY 1001 A 1 HETATM 47 H H031 XBY . . . B 2 86.638 26.15 0.562 1 49.7 ? H031 XBY 1001 A 1 HETATM 48 H H071 XBY . . . B 2 88.373 27.229 1.062 1 60.38 ? H071 XBY 1001 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #