data_7KYV # _model_server_result.job_id oJZCyGM2DxmRWgSpwf3dlg _model_server_result.datetime_utc '2024-11-25 16:34:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 7KYV # _exptl.entry_id 7KYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KYV _cell.length_a 85.288 _cell.length_b 85.288 _cell.length_c 139.216 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 7KYV _atom_sites.fract_transf_matrix[1][1] 0.011725 _atom_sites.fract_transf_matrix[1][2] 0.006769 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XBY A 1 1001 1001 XBY 634 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 GOL A 1 1004 1004 GOL GOL . F 5 GOL A 1 1005 1005 GOL GOL . G 5 GOL A 1 1006 1007 GOL GOL . H 5 GOL A 1 1007 1008 GOL GOL . I 6 HOH A 1 1101 35 HOH HOH . I 6 HOH A 2 1102 22 HOH HOH . I 6 HOH A 3 1103 4 HOH HOH . I 6 HOH A 4 1104 45 HOH HOH . I 6 HOH A 5 1105 24 HOH HOH . I 6 HOH A 6 1106 43 HOH HOH . I 6 HOH A 7 1107 11 HOH HOH . I 6 HOH A 8 1108 38 HOH HOH . I 6 HOH A 9 1109 17 HOH HOH . I 6 HOH A 10 1110 42 HOH HOH . I 6 HOH A 11 1111 14 HOH HOH . I 6 HOH A 12 1112 5 HOH HOH . I 6 HOH A 13 1113 9 HOH HOH . I 6 HOH A 14 1114 30 HOH HOH . I 6 HOH A 15 1115 15 HOH HOH . I 6 HOH A 16 1116 41 HOH HOH . I 6 HOH A 17 1117 33 HOH HOH . I 6 HOH A 18 1118 19 HOH HOH . I 6 HOH A 19 1119 2 HOH HOH . I 6 HOH A 20 1120 12 HOH HOH . I 6 HOH A 21 1121 3 HOH HOH . I 6 HOH A 22 1122 61 HOH HOH . I 6 HOH A 23 1123 48 HOH HOH . I 6 HOH A 24 1124 27 HOH HOH . I 6 HOH A 25 1125 1 HOH HOH . I 6 HOH A 26 1126 10 HOH HOH . I 6 HOH A 27 1127 69 HOH HOH . I 6 HOH A 28 1128 56 HOH HOH . I 6 HOH A 29 1129 21 HOH HOH . I 6 HOH A 30 1130 89 HOH HOH . I 6 HOH A 31 1131 6 HOH HOH . I 6 HOH A 32 1132 25 HOH HOH . I 6 HOH A 33 1133 44 HOH HOH . I 6 HOH A 34 1134 20 HOH HOH . I 6 HOH A 35 1135 64 HOH HOH . I 6 HOH A 36 1136 78 HOH HOH . I 6 HOH A 37 1137 16 HOH HOH . I 6 HOH A 38 1138 31 HOH HOH . I 6 HOH A 39 1139 32 HOH HOH . I 6 HOH A 40 1140 68 HOH HOH . I 6 HOH A 41 1141 80 HOH HOH . I 6 HOH A 42 1142 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 81.939 21.211 11.19 1 17.03 ? N1 FMN 1002 A 1 HETATM 2 C C2 FMN . . . C 3 82.474 20.246 11.989 1 20.74 ? C2 FMN 1002 A 1 HETATM 3 O O2 FMN . . . C 3 82.19 20.312 13.177 1 12.58 ? O2 FMN 1002 A 1 HETATM 4 N N3 FMN . . . C 3 83.281 19.251 11.462 1 24.89 ? N3 FMN 1002 A 1 HETATM 5 C C4 FMN . . . C 3 83.555 19.242 10.11 1 21.7 ? C4 FMN 1002 A 1 HETATM 6 O O4 FMN . . . C 3 84.272 18.371 9.615 1 19.39 ? O4 FMN 1002 A 1 HETATM 7 C C4A FMN . . . C 3 83.012 20.231 9.315 1 24.1 ? C4A FMN 1002 A 1 HETATM 8 N N5 FMN . . . C 3 83.264 20.237 7.969 1 25.83 ? N5 FMN 1002 A 1 HETATM 9 C C5A FMN . . . C 3 82.728 21.232 7.178 1 23.58 ? C5A FMN 1002 A 1 HETATM 10 C C6 FMN . . . C 3 83 21.232 5.822 1 19.95 ? C6 FMN 1002 A 1 HETATM 11 C C7 FMN . . . C 3 82.467 22.222 5.011 1 20.69 ? C7 FMN 1002 A 1 HETATM 12 C C7M FMN . . . C 3 82.749 22.224 3.538 1 27.9 ? C7M FMN 1002 A 1 HETATM 13 C C8 FMN . . . C 3 81.66 23.204 5.565 1 13.18 ? C8 FMN 1002 A 1 HETATM 14 C C8M FMN . . . C 3 81.076 24.281 4.703 1 30.51 ? C8M FMN 1002 A 1 HETATM 15 C C9 FMN . . . C 3 81.397 23.2 6.923 1 14.41 ? C9 FMN 1002 A 1 HETATM 16 C C9A FMN . . . C 3 81.925 22.213 7.734 1 15.75 ? C9A FMN 1002 A 1 HETATM 17 N N10 FMN . . . C 3 81.655 22.206 9.091 1 21.82 ? N10 FMN 1002 A 1 HETATM 18 C C10 FMN . . . C 3 82.204 21.216 9.861 1 21.48 ? C10 FMN 1002 A 1 HETATM 19 C C1' FMN . . . C 3 80.791 23.26 9.73 1 31.86 ? C1' FMN 1002 A 1 HETATM 20 C C2' FMN . . . C 3 81.628 24.523 9.977 1 21.25 ? C2' FMN 1002 A 1 HETATM 21 O O2' FMN . . . C 3 82.755 24.105 10.721 1 24.04 ? O2' FMN 1002 A 1 HETATM 22 C C3' FMN . . . C 3 80.879 25.633 10.701 1 13.93 ? C3' FMN 1002 A 1 HETATM 23 O O3' FMN . . . C 3 80.49 25.122 11.945 1 20.99 ? O3' FMN 1002 A 1 HETATM 24 C C4' FMN . . . C 3 79.679 26.068 9.869 1 23.86 ? C4' FMN 1002 A 1 HETATM 25 O O4' FMN . . . C 3 80.064 25.98 8.504 1 35.05 ? O4' FMN 1002 A 1 HETATM 26 C C5' FMN . . . C 3 79.168 27.465 10.188 1 33.96 ? C5' FMN 1002 A 1 HETATM 27 O O5' FMN . . . C 3 80.204 28.404 10.038 1 45.78 ? O5' FMN 1002 A 1 HETATM 28 P P FMN . . . C 3 80.146 29.585 8.95 1 36.09 ? P FMN 1002 A 1 HETATM 29 O O1P FMN . . . C 3 80.527 28.975 7.625 1 34.58 ? O1P FMN 1002 A 1 HETATM 30 O O2P FMN . . . C 3 81.123 30.677 9.299 1 42.14 ? O2P FMN 1002 A 1 HETATM 31 O O3P FMN . . . C 3 78.754 30.165 8.899 1 35.68 ? O3P FMN 1002 A 1 HETATM 32 H HN3 FMN . . . C 3 83.679 18.517 12.081 1 29.84 ? HN3 FMN 1002 A 1 HETATM 33 H H6 FMN . . . C 3 83.631 20.455 5.391 1 23.91 ? H6 FMN 1002 A 1 HETATM 34 H HM71 FMN . . . C 3 81.924 22.704 3.011 1 33.45 ? HM71 FMN 1002 A 1 HETATM 35 H HM72 FMN . . . C 3 82.856 21.198 3.187 1 33.45 ? HM72 FMN 1002 A 1 HETATM 36 H HM73 FMN . . . C 3 83.671 22.773 3.345 1 33.45 ? HM73 FMN 1002 A 1 HETATM 37 H HM81 FMN . . . C 3 80.55 25.002 5.329 1 36.58 ? HM81 FMN 1002 A 1 HETATM 38 H HM82 FMN . . . C 3 80.378 23.839 3.993 1 36.58 ? HM82 FMN 1002 A 1 HETATM 39 H HM83 FMN . . . C 3 81.875 24.786 4.161 1 36.58 ? HM83 FMN 1002 A 1 HETATM 40 H H9 FMN . . . C 3 80.769 23.979 7.356 1 17.26 ? H9 FMN 1002 A 1 HETATM 41 H "H1'1" FMN . . . C 3 80.392 22.89 10.674 1 38.2 ? "H1'1" FMN 1002 A 1 HETATM 42 H "H1'2" FMN . . . C 3 79.949 23.494 9.079 1 38.2 ? "H1'2" FMN 1002 A 1 HETATM 43 H H2' FMN . . . C 3 81.906 24.965 9.02 1 25.47 ? H2' FMN 1002 A 1 HETATM 44 H HO2' FMN . . . C 3 82.81 24.626 11.55 1 28.82 ? HO2' FMN 1002 A 1 HETATM 45 H H3' FMN . . . C 3 81.504 26.513 10.851 1 16.69 ? H3' FMN 1002 A 1 HETATM 46 H H4' FMN . . . C 3 78.843 25.407 10.099 1 28.6 ? H4' FMN 1002 A 1 HETATM 47 H HO4' FMN . . . C 3 80.007 26.866 8.09 1 42.03 ? HO4' FMN 1002 A 1 HETATM 48 H "H5'1" FMN . . . C 3 78.344 27.716 9.521 1 40.72 ? "H5'1" FMN 1002 A 1 HETATM 49 H "H5'2" FMN . . . C 3 78.792 27.493 11.211 1 40.72 ? "H5'2" FMN 1002 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #